Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028488.1

Orthogroup ID

OG0000726

Physical Location & Seq

Genomic Coordinates Reverse (-)

1012 .. 1596

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028488.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggccagaatacttcccatctttgctacacagttcatagttctctcccttctttctttcttagccctaattctggtccagggagaagatgatcacgatttcgtaaaagccatggaccgagatctcttggggctcaagaaagaaaagctcagccacttcaagttgtactggcatgacattcagagcggcaaaaacccaagctcaatcagagtggtgaaatcacccgtcaactcatcgacgttcttcggattggtgaacatgatcgacaatcccctcaccgaaaagccggagctgagctcaaagctactggggagggcccaagggctctacgcatcagcttcacaacaggaggtcgggctgttgatggctatgaactttcattttattcagggcaagtacaacgggagcaccataaccgtgctggggaggaacccagtgttcaacaaggtgagggagatgccggtgatcggaggaagtgggcttttcaggtttgcaagaggttatgttgaagcaagaactcatacattcactgcgagcaccggagatgccatcgttgagtacaatgcctatgtgctccattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

194

Amino Acids

21.66

Weight (kDa)

9.3

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55210 AT1G55210 AT1G58170 AT3G13660
fragaria_vesca	FvH4_3g44750 FvH4_3g44752 FvH4_3g44790 FvH4_3g44800
malus_domestica	MD03G1010600.v1.1 MD03G1010700.v1.1 MD11G1012400.v1.1 MD11G1012500.v1.1
prunus_persica	Prupe.6G010300_v2.0.a1 Prupe.6G010500_v2.0.a1 Prupe.6G010600_v2.0.a1
pyrus_communis	pycom03g00940 pycom03g00950 pycom11g00810
rosa_chinensis	RchiOBHm_Chr5g0080641 RchiOBHm_Chr5g0081441 RchiOBHm_Chr5g0081451 RchiOBHm_Chr5g0081461
rosa_laevigata	RLG00000036875 RLG00000036935 RLG00000036937 RLG00000036938 RLG00000036940 RLG00000036941
rosa_multiflora	Rmu_co8102938.1_g000001 Rmu_co8330035.1_g000001 Rmu_sc0001783.1_g000013 Rmu_sc0002380.1_g000004 Rmu_sc0007768.1_g000024 Rmu_sc0007768.1_g000032 Rmu_sc0009187.1_g000005 Rmu_sc0028488.1_g000001 Rmu_sc0038780.1_g000002 Rmu_sc0038780.1_g000004
rosa_roxburghii	Rroxscaffold_1G00002060 Rroxscaffold_1G00002080 Rroxscaffold_1G00002100 Rroxscaffold_1G00002760
rosa_rugosa	Rorug05G0448400 Rorug05G0470800 Rorug05G0476400 Rorug05G0476500 Rorug05G0476500 Rorug05G0476600 Rorug05G0476600
rosa_samantha	Rh5AG524100 Rh5AG527800 Rh5AG527900 Rh5AG528100 Rh5BG546400 Rh5BG552300 Rh5BG552500 Rh5BG552600 Rh5BG552700 Rh5CG569600 Rh5CG574900 Rh5CG575100 Rh5CG575200 Rh5CG575300 Rh5DG536500 Rh5DG556600 Rh5DG562000 Rh5DG562300 Rh5DG562500
rosa_wichuraiana	Rw5G048620 Rw5G049090 Rw5G049110 Rw5G049120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	186
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	167, 398, 560
AfiI	CCNNNNNNNGG	3 cut(s)	73, 423, 467
AgsI	TTSAA	3 cut(s)	160, 442, 509
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	6 cut(s)	148, 201, 292, 297, 304, 338
AluI	AGCT	6 cut(s)	148, 201, 292, 297, 304, 338
Alw21I	GWGCWC	4 cut(s)	299, 410, 539, 576
AoxI	GGCC	2 cut(s)	3, 315
ApaI	GGGCCC	1 cut(s)	319
AspS9I	GGNCC	4 cut(s)	76, 115, 315, 316
AsuHPI	GGTGA	6 cut(s)	213, 226, 265, 268, 460, 475
AvaII	GGWCC	2 cut(s)	76, 115
BaeGI	GKGCMC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	4 cut(s)	135, 299, 319, 327
Bbv12I	GWGCWC	4 cut(s)	299, 410, 539, 576
BccI	CCATC	3 cut(s)	26, 358, 557
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	91
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	187
BlpI	GCTNAGC	2 cut(s)	149, 293
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	2 cut(s)	76, 115
BmgT120I	GGNCC	4 cut(s)	76, 115, 315, 316
BmiI	GGNNCC	2 cut(s)	317, 431
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	2 cut(s)	317, 428
BmsI	GCATC	3 cut(s)	341, 447, 535
BmuI	ACTGGG	2 cut(s)	317, 428
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bpu1102I	GCTNAGC	2 cut(s)	149, 293
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	79, 111, 319
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 423, 467
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	3 cut(s)	173, 312, 434
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	79, 111, 319
BseLI	CCNNNNNNNGG	3 cut(s)	73, 423, 467
BseMII	CTCAG	2 cut(s)	163, 284
BseNI	ACTGG	3 cut(s)	173, 312, 434
BseSI	GKGCMC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	421
BshFI	GGCC	2 cut(s)	5, 317
BsiHKAI	GWGCWC	4 cut(s)	299, 410, 539, 576
BsiSI	CCGG	3 cut(s)	287, 461, 540
BslI	CCNNNNNNNGG	3 cut(s)	73, 423, 467
BsnI	GGCC	2 cut(s)	5, 317
Bsp120I	GGGCCC	1 cut(s)	315
Bsp1286I	GDGCHC	7 cut(s)	135, 299, 319, 327, 410, 539, 576
Bsp143I	GATC	4 cut(s)	91, 121, 261, 465
Bsp1720I	GCTNAGC	2 cut(s)	149, 293
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	5, 317
BspCNI	CTCAG	2 cut(s)	162, 285
BspLI	GGNNCC	2 cut(s)	317, 431
BsrBI	CCGCTC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	173, 312, 434
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	79, 111, 319
BssMI	GATC	4 cut(s)	91, 121, 261, 465
BssT1I	CCWWGG	2 cut(s)	111, 319
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	33, 418
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	3 cut(s)	61, 149, 293
BstDSI	CCRYGG	1 cut(s)	111
BstKTI	GATC	4 cut(s)	94, 124, 264, 468
BstMBI	GATC	4 cut(s)	91, 121, 261, 465
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	5, 317
BtgI	CCRYGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	441, 528
Cac8I	GCNNGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	4 cut(s)	76, 115, 315, 316
Csp6I	GTAC	3 cut(s)	166, 397, 559
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	3 cut(s)	112, 173, 259
CviQI	GTAC	3 cut(s)	166, 397, 559
DdeI	CTNAG	3 cut(s)	61, 149, 293
DpnI	GATC	4 cut(s)	93, 123, 263, 467
DpnII	GATC	4 cut(s)	91, 121, 261, 465
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	111, 319
Eco24I	GRGCYC	4 cut(s)	135, 299, 319, 327
Eco47I	GGWCC	2 cut(s)	76, 115
Eco53kI	GAGCTC	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	111, 319
EcoT38I	GRGCYC	4 cut(s)	135, 299, 319, 327
ErhI	CCWWGG	2 cut(s)	111, 319
FaeI	CATG	3 cut(s)	115, 176, 262
FaiI	YATR	9 cut(s)	38, 113, 174, 260, 371, 413, 504, 522, 570
FatI	CATG	3 cut(s)	111, 172, 258
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	187
FriOI	GRGCYC	4 cut(s)	135, 299, 319, 327
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	5, 317
HapII	CCGG	3 cut(s)	287, 461, 540
Hin1II	CATG	3 cut(s)	115, 176, 262
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	287, 461, 540
HphI	GGTGA	6 cut(s)	213, 226, 265, 268, 460, 475
Hpy166II	GTNNAC	2 cut(s)	229, 256
Hpy188I	TCNGA	4 cut(s)	183, 209, 248, 470
Hpy188III	TCNNGA	2 cut(s)	95, 136
Hpy8I	GTNNAC	2 cut(s)	229, 256
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	33, 418
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	494
HpyF3I	CTNAG	3 cut(s)	61, 149, 293
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	115, 176, 262
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	91, 121, 261, 465
LmnI	GCTCC	3 cut(s)	289, 405, 579
LweI	GCATC	3 cut(s)	341, 447, 535
MaeII	ACGT	1 cut(s)	239
MalI	GATC	4 cut(s)	93, 123, 263, 467
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	4 cut(s)	91, 121, 261, 465
MboII	GAAGA	2 cut(s)	98, 235
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	7 cut(s)	135, 299, 319, 327, 410, 539, 576
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	69
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	284, 306, 343, 420, 444, 464, 491
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	287, 461, 540
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	4 cut(s)	91, 121, 261, 465
NlaIII	CATG	3 cut(s)	115, 176, 262
NlaIV	GGNNCC	2 cut(s)	317, 431
PkrI	GCNGC	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	317, 431
PspOMI	GGGCCC	1 cut(s)	315
PspPI	GGNCC	4 cut(s)	76, 115, 315, 316
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	167, 398, 560
RsaNI	GTAC	3 cut(s)	166, 397, 559
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	299
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	4 cut(s)	91, 121, 261, 465
Sau96I	GGNCC	4 cut(s)	76, 115, 315, 316
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	7 cut(s)	135, 299, 319, 327, 410, 539, 576
SfaNI	GCATC	3 cut(s)	341, 447, 535
SinI	GGWCC	2 cut(s)	76, 115
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	111, 319
TaaI	ACNGT	2 cut(s)	33, 418
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	2 cut(s)	236, 264
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	69
TatI	WGTACW	3 cut(s)	165, 396, 558
TauI	GCSGC	1 cut(s)	189
TscAI	CASTG	2 cut(s)	441, 535
TspDTI	ATGAA	3 cut(s)	25, 368, 386
TspRI	CASTG	2 cut(s)	441, 535
VpaK11BI	GGWCC	2 cut(s)	76, 115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.