Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000726

Physical Location & Seq

Genomic Coordinates Reverse (-)

90501842 .. 90502321

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG527800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATCCCGAGCGTTTTGGTCTAAAGAAAGAAAAACTTACCCATTTTCGCTTGTATTGGCACGACATTGTTGATGGTCCTAGTCCCACTGCCGTGACGGTAGTGCAACCACTCTCCAACTCCTCCCAAACAAAGTTCGGGATGATACGAATGATCGACAACCAGCTAACCTTAGGCCCCGAATCGAGCTCGAAGCTGTTGGGAAGGGCACAAGGGTTTTATGCATCTGCATCACAAGAAGACCTCAGTCTGTTGATGGCTCAGAACTTTGCATTTGTTCAGGGGAAGTATAACGGTAGCACCATAACCCTGATGGGAAGGAACTCGCTTACCAACAAGGTAAGGGAGCTGTCGGTGATCGGAGGAAGTGGACTTTTCAGGTTTGCTAGGGGTTATGCTCTACTAACAACTCAGTCGTTTAACGCCTCTAAAAGTGATGATGCTGTGGTGGAGTATAACATCTATGTCTTGCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

159

Amino Acids

17.67

Weight (kDa)

9.19

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	14 - 156	4e-56	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55210 AT1G55210 AT1G58170 AT3G13660
fragaria_vesca	FvH4_3g44750 FvH4_3g44752 FvH4_3g44790 FvH4_3g44800
malus_domestica	MD03G1010600.v1.1 MD03G1010700.v1.1 MD11G1012400.v1.1 MD11G1012500.v1.1
prunus_persica	Prupe.6G010300_v2.0.a1 Prupe.6G010500_v2.0.a1 Prupe.6G010600_v2.0.a1
pyrus_communis	pycom03g00940 pycom03g00950 pycom11g00810
rosa_chinensis	RchiOBHm_Chr5g0080641 RchiOBHm_Chr5g0081441 RchiOBHm_Chr5g0081451 RchiOBHm_Chr5g0081461
rosa_laevigata	RLG00000036875 RLG00000036935 RLG00000036937 RLG00000036938 RLG00000036940 RLG00000036941
rosa_multiflora	Rmu_co8102938.1_g000001 Rmu_co8330035.1_g000001 Rmu_sc0001783.1_g000013 Rmu_sc0002380.1_g000004 Rmu_sc0007768.1_g000024 Rmu_sc0007768.1_g000032 Rmu_sc0009187.1_g000005 Rmu_sc0028488.1_g000001 Rmu_sc0038780.1_g000002 Rmu_sc0038780.1_g000004
rosa_roxburghii	Rroxscaffold_1G00002060 Rroxscaffold_1G00002080 Rroxscaffold_1G00002100 Rroxscaffold_1G00002760
rosa_rugosa	Rorug05G0448400 Rorug05G0470800 Rorug05G0476400 Rorug05G0476500 Rorug05G0476500 Rorug05G0476600 Rorug05G0476600
rosa_samantha	Rh5AG524100 Rh5AG527800 Rh5AG527900 Rh5AG528100 Rh5BG546400 Rh5BG552300 Rh5BG552500 Rh5BG552600 Rh5BG552700 Rh5CG569600 Rh5CG574900 Rh5CG575100 Rh5CG575200 Rh5CG575300 Rh5DG536500 Rh5DG556600 Rh5DG562000 Rh5DG562300 Rh5DG562500
rosa_wichuraiana	Rw5G048620 Rw5G049090 Rw5G049110 Rw5G049120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	4 cut(s)	166, 189, 196, 349
AluI	AGCT	4 cut(s)	166, 189, 196, 349
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	77, 176
AsuHPI	GGTGA	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	3 cut(s)	68, 250, 307
BceAI	ACGGC	1 cut(s)	77
BfaI	CTAG	2 cut(s)	81, 387
Bme18I	GGWCC	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	77, 176
BmiI	GGNNCC	2 cut(s)	6, 178
BmsI	GCATC	3 cut(s)	233, 239, 430
BoxI	GACNNNNGTC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	246
Bse21I	CCTNAGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	3 cut(s)	259, 275, 425
BseRI	GAGGAG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	191, 211
Bsp143I	GATC	3 cut(s)	4, 153, 357
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	3 cut(s)	258, 274, 424
BspLI	GGNNCC	2 cut(s)	6, 178
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	3 cut(s)	4, 153, 357
Bst4CI	ACNGT	2 cut(s)	100, 296
BstDEI	CTNAG	4 cut(s)	172, 245, 261, 411
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	3 cut(s)	7, 156, 360
BstMBI	GATC	3 cut(s)	4, 153, 357
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	77, 176
CviJI	RGCY	6 cut(s)	166, 177, 189, 196, 260, 349
CviKI_1	RGCY	6 cut(s)	166, 177, 189, 196, 260, 349
DdeI	CTNAG	4 cut(s)	172, 245, 261, 411
DpnI	GATC	3 cut(s)	6, 155, 359
DpnII	GATC	3 cut(s)	4, 153, 357
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	189
Eco81I	CCTNAGG	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	191
FaiI	YATR	6 cut(s)	222, 291, 305, 396, 456, 465
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	69
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	191
FspBI	CTAG	2 cut(s)	81, 387
HaeIII	GGCC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	264, 362
Hpy188III	TCNNGA	2 cut(s)	8, 139
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	198, 312
HpyCH4III	ACNGT	2 cut(s)	100, 296
HpyCH4V	TGCA	5 cut(s)	106, 224, 230, 272, 472
HpyF3I	CTNAG	4 cut(s)	172, 245, 261, 411
Kzo9I	GATC	3 cut(s)	4, 153, 357
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	4 cut(s)	176, 266, 323, 364
LweI	GCATC	3 cut(s)	233, 239, 430
MaeI	CTAG	2 cut(s)	81, 387
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	3 cut(s)	6, 155, 359
MboI	GATC	3 cut(s)	4, 153, 357
MboII	GAAGA	1 cut(s)	251
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	191, 211
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	133, 254, 356, 436
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	92
NdeII	GATC	3 cut(s)	4, 153, 357
NlaIV	GGNNCC	2 cut(s)	6, 178
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	6, 178
PspPI	GGNCC	2 cut(s)	77, 176
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	4, 153, 357
Sau96I	GGNCC	2 cut(s)	77, 176
SduI	GDGCHC	2 cut(s)	191, 211
SetI	ASST	8 cut(s)	168, 173, 191, 198, 246, 342, 351, 383
SfaNI	GCATC	3 cut(s)	233, 239, 430
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	92
SspMI	CTAG	2 cut(s)	81, 387
SstI	GAGCTC	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	100, 296
TaqI	TCGA	3 cut(s)	156, 185, 191
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	2 cut(s)	81, 387
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.