Rmu_sc0038780.1_g000002

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038780.1
Physical Location & Seq
Reverse (-)
2047 .. 2373
327 bp
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UTR
Exon/CDS
Intron
Rmu_sc0038780.1_g000002.1.cds

Sequence Viewer

Length: 327 bp
atgatcgacgatcccctcaccgaaaagccggagctgagctcgaagctactggggagggctcaagggttctacgcatcagcttctcaacaggaggtcgggctgttgatggctatgaactttcattttattcagggcaagtacaacgggagcaccataaccgtgctggggaggaacccagtgttcaacaaggtgagggagatgccggtgatcggaggaagtgggcttttcaggtttgcaagaggttatgttgaagcaagaactcatacattcactgcgagcaccggagatgccatcgttgagtacaatgcctatgtgctccattattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

8.04

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 5
AfaI GTAC 2 cut(s) 140, 302
AfiI CCNNNNNNNGG 2 cut(s) 165, 209
AgsI TTSAA 2 cut(s) 184, 251
AluBI AGCT 4 cut(s) 34, 39, 46, 80
AluI AGCT 4 cut(s) 34, 39, 46, 80
Alw21I GWGCWC 4 cut(s) 41, 152, 281, 318
AlwI GGATC 1 cut(s) 5
AsuHPI GGTGA 3 cut(s) 10, 202, 217
BanII GRGCYC 2 cut(s) 41, 61
Bbv12I GWGCWC 4 cut(s) 41, 152, 281, 318
BccI CCATC 2 cut(s) 100, 299
BlpI GCTNAGC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 173
BmrI ACTGGG 2 cut(s) 59, 170
BmsI GCATC 3 cut(s) 83, 189, 277
BmuI ACTGGG 2 cut(s) 59, 170
BplI GAGNNNNNCTC 2 cut(s) 23, 55
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 209
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 2 cut(s) 54, 176
BseLI CCNNNNNNNGG 2 cut(s) 165, 209
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 54, 176
BseYI CCCAGC 1 cut(s) 163
BsiHKAI GWGCWC 4 cut(s) 41, 152, 281, 318
BsiSI CCGG 3 cut(s) 29, 203, 282
BslI CCNNNNNNNGG 2 cut(s) 165, 209
Bsp1286I GDGCHC 5 cut(s) 41, 61, 152, 281, 318
Bsp143I GATC 3 cut(s) 3, 10, 207
Bsp1720I GCTNAGC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 2 cut(s) 54, 176
BssAI RCCGGY 1 cut(s) 202
BssMI GATC 3 cut(s) 3, 10, 207
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 35
BstKTI GATC 3 cut(s) 6, 13, 210
BstMBI GATC 3 cut(s) 3, 10, 207
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 183, 270
Cac8I GCNNGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 202
Csp6I GTAC 2 cut(s) 139, 301
CviJI RGCY 9 cut(s) 28, 34, 39, 46, 59, 80, 100, 110, 223
CviKI_1 RGCY 9 cut(s) 28, 34, 39, 46, 59, 80, 100, 110, 223
CviQI GTAC 2 cut(s) 139, 301
DdeI CTNAG 1 cut(s) 35
DpnI GATC 3 cut(s) 5, 12, 209
DpnII GATC 3 cut(s) 3, 10, 207
Ecl136II GAGCTC 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 41, 61
Eco53kI GAGCTC 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 39
EcoT38I GRGCYC 2 cut(s) 41, 61
FaiI YATR 5 cut(s) 113, 155, 246, 264, 312
FriOI GRGCYC 2 cut(s) 41, 61
GsaI CCCAGC 1 cut(s) 167
HapII CCGG 3 cut(s) 29, 203, 282
HpaII CCGG 3 cut(s) 29, 203, 282
HphI GGTGA 3 cut(s) 10, 202, 217
Hpy188I TCNGA 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 35
Kzo9I GATC 3 cut(s) 3, 10, 207
LmnI GCTCC 3 cut(s) 31, 147, 321
LpnPI CCDG 9 cut(s) 35, 42, 74, 116, 149, 189, 214, 216, 295
LweI GCATC 3 cut(s) 83, 189, 277
MalI GATC 3 cut(s) 5, 12, 209
MboI GATC 3 cut(s) 3, 10, 207
MhlI GDGCHC 5 cut(s) 41, 61, 152, 281, 318
MnlI CCTC 7 cut(s) 26, 48, 85, 162, 186, 206, 233
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 3 cut(s) 29, 203, 282
NdeII GATC 3 cut(s) 3, 10, 207
NlaIV GGNNCC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 41
PspFI CCCAGC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 173
RsaI GTAC 2 cut(s) 140, 302
RsaNI GTAC 2 cut(s) 139, 301
RseI CAYNNNNRTG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 3, 10, 207
SduI GDGCHC 5 cut(s) 41, 61, 152, 281, 318
SetI ASST 8 cut(s) 36, 41, 48, 82, 96, 192, 233, 244
SfaNI GCATC 3 cut(s) 83, 189, 277
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 41
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 6, 41
TatI WGTACW 2 cut(s) 138, 300
TscAI CASTG 2 cut(s) 183, 277
TspDTI ATGAA 2 cut(s) 110, 128
TspRI CASTG 2 cut(s) 183, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.