Rorug05G0476400

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
65556857 .. 65557725
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0476400.1

Sequence Viewer

Length: 522 bp
ATGGGAATGGCTACCACATCCATATCTCTATCCCCATCAACTTTTCCCCCAATTCTCAAACCAAACCATTGCCAATTTCTCAGAACCCAGAAACCAAATTCTTTGCCTTTGCCCTCACAAACCAATTTTTCAACCAAAAAGACCTTAACTTTCCACAACCCACATGAGAATATCAACCAGAGAATTTGGAGAACGTATGCAACCTCAGTTGAATCTGTGGCTTCAGAAGCAAACCCAATTGAGACTGCACAGGAGATAGTGGCCACCACTAGTGATGATGGTGTCTCTGTCACCATTTCTGTTCTTCTCTTTGTTGCATTTGTTGGTCTCACCATTCTCACTATTGGGGTTGTGTACCTAGGTGTGACAGATTACTTGCAGAAGAGGGAGAGGGAGAAGCTTGAGAAAGAAGAGGAAGCTAACAAGAAGAAGGGTGGAAAGAAGAGGAGACTGAGAGCAAGAGCTGGGCCTAAGGGATTTGGACAAAAGGTTGAAGAGTTTGAATTTGATGCAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.27

Weight (kDa)

8.99

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 3 cut(s) 97, 183, 503
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 356
AgsI TTSAA 4 cut(s) 132, 212, 494, 503
AhlI ACTAGT 1 cut(s) 269
AluBI AGCT 3 cut(s) 400, 419, 464
AluI AGCT 3 cut(s) 400, 419, 464
Alw26I GTCTC 4 cut(s) 236, 289, 332, 442
AoxI GGCC 2 cut(s) 261, 467
ApoI RAATTY 3 cut(s) 97, 183, 503
AspA2I CCTAGG 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 283, 322
AvrII CCTAGG 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 471
BalI TGGCCA 1 cut(s) 263
BccI CCATC 2 cut(s) 43, 272
BcoDI GTCTC 4 cut(s) 236, 289, 332, 442
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 270, 359
BlnI CCTAGG 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 467
BmsI GCATC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 358
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 3 cut(s) 94, 219, 443
BseRI GAGGAG 1 cut(s) 460
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 2 cut(s) 263, 469
BsmAI GTCTC 4 cut(s) 236, 289, 332, 442
BsnI GGCC 2 cut(s) 263, 469
Bso31I GGTCTC 1 cut(s) 332
BspANI GGCC 2 cut(s) 263, 469
BspCNI CTCAG 3 cut(s) 93, 218, 444
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 358
Bst6I CTCTTC 4 cut(s) 377, 405, 437, 489
BstDEI CTNAG 4 cut(s) 80, 205, 452, 471
BstF5I GGATG 1 cut(s) 17
BstMAI GTCTC 4 cut(s) 236, 289, 332, 442
BstMWI GCNNNNNNNGC 1 cut(s) 227
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 263, 469
BtsCI GGATG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 164
CviJI RGCY 7 cut(s) 11, 221, 263, 400, 419, 464, 469
CviKI_1 RGCY 7 cut(s) 11, 221, 263, 400, 419, 464, 469
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 4 cut(s) 80, 205, 452, 471
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 4 cut(s) 377, 405, 437, 489
EarI CTCTTC 4 cut(s) 377, 405, 437, 489
Eco130I CCWWGG 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 167
FaiI YATR 3 cut(s) 23, 165, 198
FatI CATG 1 cut(s) 163
FokI GGATG 1 cut(s) 4
FspBI CTAG 2 cut(s) 270, 359
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 263, 469
Hin1II CATG 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 283, 322
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 83, 226
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 5 cut(s) 200, 248, 317, 379, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 4 cut(s) 80, 205, 452, 471
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 1 cut(s) 167
LpnPI CCDG 4 cut(s) 101, 191, 236, 450
LweI GCATC 1 cut(s) 499
MaeI CTAG 2 cut(s) 270, 359
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 2 cut(s) 289, 364
MboII GAAGA 6 cut(s) 296, 394, 422, 439, 454, 506
MfeI CAATTG 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 7 cut(s) 51, 74, 97, 124, 183, 237, 503
MluNI TGGCCA 1 cut(s) 263
MnlI CCTC 6 cut(s) 124, 214, 378, 384, 406, 438
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 146, 520
Msp20I TGGCCA 1 cut(s) 263
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 227
NlaIII CATG 1 cut(s) 167
NmuCI GTSAC 2 cut(s) 289, 364
PfeI GAWTC 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 464
PspPI GGNCC 1 cut(s) 467
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 146, 520
Sau96I GGNCC 1 cut(s) 467
SetI ASST 9 cut(s) 146, 197, 206, 360, 364, 402, 421, 466, 492
SfaNI GCATC 1 cut(s) 499
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 7 cut(s) 51, 74, 97, 124, 183, 237, 503
SspMI CTAG 2 cut(s) 270, 359
StyI CCWWGG 1 cut(s) 358
TaiI ACGT 1 cut(s) 197
TasI AATT 7 cut(s) 51, 74, 97, 124, 183, 237, 503
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 146, 520
Tru9I TTAA 2 cut(s) 146, 520
TseFI GTSAC 2 cut(s) 289, 364
Tsp45I GTSAC 2 cut(s) 289, 364
XapI RAATTY 3 cut(s) 97, 183, 503
XmaJI CCTAGG 1 cut(s) 358
XspI CTAG 2 cut(s) 270, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.