FvH4_4g06680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001322
Physical Location & Seq
Reverse (-)
5994439 .. 5995332
894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06680.t1

Sequence Viewer

Length: 357 bp
ATGGATTGGTTGCTCAAGTTAAGGAGAGCTTTGCTTGCCTTCTCTGCCAGACTCAAGCATCGTAAATCTGTAGGTGGTGCTGGTGGTGATCAGTGTGGTGGAGTAGGTGGTCTGCTAAAGCTTCAAGATGATGTGCAAATGTGTGGGTACCAAGATGTACAAATTATGTGGAACATGTTGAGCAAAGCTCAACAGGAGGAGATTCAGATCATGGCAACAACTGATCAGTCCAAGCCGAATCAGAAGCAACGAAGACGACAACGACCCTCTTGTTCTTTCAGGGCTTTCTTTGGACCAGCCACACAGAGCTGCGTCTTGGTTAGACTAGAATCCAATGCTTGTTCACTCTTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.22

Weight (kDa)

9.72

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AfaI GTAC 2 cut(s) 149, 159
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 125, 352
AluBI AGCT 4 cut(s) 29, 121, 188, 309
AluI AGCT 4 cut(s) 29, 121, 188, 309
ApeKI GCWGC 1 cut(s) 309
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 296
BclI TGATCA 2 cut(s) 88, 223
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 149
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 259
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpuEI CTTGAG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 3 cut(s) 88, 207, 223
BspLI GGNNCC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 157
BssMI GATC 3 cut(s) 88, 207, 223
BstAUI TGTACA 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 36
BstKTI GATC 3 cut(s) 91, 210, 226
BstMBI GATC 3 cut(s) 88, 207, 223
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstNSI RCATGY 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 301
Csp6I GTAC 2 cut(s) 148, 158
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 2 cut(s) 175, 211
CviJI RGCY 7 cut(s) 29, 121, 188, 235, 284, 299, 309
CviKI_1 RGCY 7 cut(s) 29, 121, 188, 235, 284, 299, 309
CviQI GTAC 2 cut(s) 148, 158
DpnI GATC 3 cut(s) 90, 209, 225
DpnII GATC 3 cut(s) 88, 207, 223
Eco47I GGWCC 1 cut(s) 293
FaeI CATG 2 cut(s) 178, 214
FaiI YATR 3 cut(s) 167, 176, 212
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FatI CATG 2 cut(s) 174, 210
FbaI TGATCA 2 cut(s) 88, 223
Fnu4HI GCNGC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 310
HgaI GACGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 178, 214
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 4 cut(s) 51, 202, 238, 329
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 344
Hpy188I TCNGA 2 cut(s) 207, 243
Hpy188III TCNNGA 2 cut(s) 125, 349
Hpy8I GTNNAC 1 cut(s) 344
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
Hsp92II CATG 2 cut(s) 178, 214
KpnI GGTACC 1 cut(s) 151
Ksp22I TGATCA 2 cut(s) 88, 223
Kzo9I GATC 3 cut(s) 88, 207, 223
LpnPI CCDG 5 cut(s) 61, 66, 179, 265, 309
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 326
MalI GATC 3 cut(s) 90, 209, 225
MboI GATC 3 cut(s) 88, 207, 223
MboII GAAGA 1 cut(s) 264
MluCI AATT 1 cut(s) 162
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 2 cut(s) 190, 277
MseI TTAA 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NdeII GATC 3 cut(s) 88, 207, 223
NlaIII CATG 2 cut(s) 178, 214
NlaIV GGNNCC 1 cut(s) 149
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 3 cut(s) 202, 238, 329
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PscI ACATGT 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 293
RsaI GTAC 2 cut(s) 149, 159
RsaNI GTAC 2 cut(s) 148, 158
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 3 cut(s) 88, 207, 223
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 45
SetI ASST 6 cut(s) 31, 76, 109, 123, 190, 311
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 14, 53
SmoI CTYRAG 2 cut(s) 14, 53
Sse9I AATT 1 cut(s) 162
SspMI CTAG 1 cut(s) 326
TasI AATT 1 cut(s) 162
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 3 cut(s) 202, 238, 329
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 98
TseI GCWGC 1 cut(s) 309
TspRI CASTG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 293
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.