Rh6CG498600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001322
Physical Location & Seq
Forward (+)
66295560 .. 66295926
367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG498600.1

Sequence Viewer

Length: 279 bp
ATGGCGTTGTGGCGTAAGATGAAGTTTCCGATGCGGAGAACTTTTAACTGGGTCGCCACCCGCGTCGGACTCAAAAAAACCGGGCTACCGAAGCTGCGACACGATGTGAAGGCTTGCGAGTATGAGGACGTGCGTGTGATGTGGAACATACTCAACAAAAATGAGCCAGAGACTATTCGATTGGGAGGAAGCGCAAGGAAGAAGAAGAAGAAGAAGATGCCTTCTTGCAATTTCTTGGATTGGGTTAAACGCACACCACTTATGTGCCGTGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.97

Weight (kDa)

10.56

Isoelectric Point (pI)

67.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 2 cut(s) 34, 61
AdeI CACNNNGTG 1 cut(s) 106
AjiI CACGTC 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 262
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 82
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 21, 207
BmuI ACTGGG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 164
BspACI CCGC 2 cut(s) 34, 61
BspFNI CGCG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 115
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 80
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 194
CseI GACGC 1 cut(s) 52
CviJI RGCY 4 cut(s) 85, 94, 113, 166
CviKI_1 RGCY 4 cut(s) 85, 94, 113, 166
DraIII CACNNNGTG 1 cut(s) 106
FaiI YATR 3 cut(s) 123, 149, 263
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 95
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 194
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 69
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 30, 68
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 103, 231
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 129
HspAI GCGC 1 cut(s) 192
LpnPI CCDG 3 cut(s) 34, 94, 180
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 21, 207
MaeII ACGT 1 cut(s) 129
MboII GAAGA 6 cut(s) 211, 214, 217, 220, 223, 226
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 2 cut(s) 118, 179
MseI TTAA 2 cut(s) 45, 246
MslI CAYNNNNRTG 1 cut(s) 262
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 82
OliI CACNNNNGTG 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 2 cut(s) 45, 246
SatI GCNGC 1 cut(s) 95
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 82
SetI ASST 2 cut(s) 96, 132
SfaNI GCATC 2 cut(s) 21, 207
SmiMI CAYNNNNRTG 1 cut(s) 262
Sse9I AATT 1 cut(s) 229
SsiI CCGC 2 cut(s) 34, 61
StyD4I CCNGG 1 cut(s) 80
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 229
Tru1I TTAA 2 cut(s) 45, 246
Tru9I TTAA 2 cut(s) 45, 246
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.