FvH4_6g28000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001322
Physical Location & Seq
Forward (+)
21539274 .. 21542395
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28000.t1

Sequence Viewer

Length: 288 bp
ATGGAGTTCTGGGACAAGATGGTCTTCCCTGTCCGCCGTGTCTGGCTTGCTGTCTCTACTCGTGTTAAGGCTCGCAAAAACGGTGCAGGACTTTTGAAGCTTCACGACGATGTACAAACCTGTGGCTATCAAGATGTCCAAGTGATGTGGCAGATGTTGAGCAGAGAGGCTGAGCTGATAAATCACCACCATGCAAAACGTAAACATCGACGACCTTTCTGGAGAGTGTTTGAATGGTCTAACAACCATAGTACTAAAGCCTCCTCCTTCTCTGCAAATCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.33

Weight (kDa)

10.42

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AciI CCGC 1 cut(s) 34
AfaI GTAC 2 cut(s) 114, 253
AgsI TTSAA 2 cut(s) 97, 233
AluBI AGCT 2 cut(s) 100, 175
AluI AGCT 2 cut(s) 100, 175
Alw26I GTCTC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 176
BauI CACGAG 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 16
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 58
BlpI GCTNAGC 1 cut(s) 171
BmcAI AGTACT 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 241
Bpu1102I GCTNAGC 1 cut(s) 171
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 26
Bsp1407I TGTACA 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 163
BsrGI TGTACA 1 cut(s) 112
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 48, 73
BstDEI CTNAG 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 48, 73
Csp6I GTAC 2 cut(s) 113, 252
CspCI CAANNNNNGTGG 2 cut(s) 128, 163
CviAII CATG 2 cut(s) 191, 281
CviJI RGCY 7 cut(s) 46, 71, 100, 126, 170, 175, 260
CviKI_1 RGCY 7 cut(s) 46, 71, 100, 126, 170, 175, 260
CviQI GTAC 2 cut(s) 113, 252
DdeI CTNAG 1 cut(s) 171
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EciI GGCGGA 1 cut(s) 23
FaeI CATG 2 cut(s) 194, 284
FaiI YATR 3 cut(s) 192, 249, 282
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 190, 280
GsuI CTGGAG 1 cut(s) 241
Hin1II CATG 2 cut(s) 194, 284
HindIII AAGCTT 1 cut(s) 98
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 203
Hpy188III TCNNGA 3 cut(s) 104, 131, 220
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 2 cut(s) 110, 213
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 86, 194, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 194, 284
LpnPI CCDG 5 cut(s) 28, 42, 72, 133, 205
MaeII ACGT 1 cut(s) 199
MboII GAAGA 1 cut(s) 16
MnlI CCTC 3 cut(s) 160, 271, 274
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 108, 189
MwoI GCNNNNNNNGC 1 cut(s) 281
NlaIII CATG 2 cut(s) 194, 284
PcsI WCGNNNNNNNCGW 1 cut(s) 205
RsaI GTAC 2 cut(s) 114, 253
RsaNI GTAC 2 cut(s) 113, 252
RseI CAYNNNNRTG 2 cut(s) 108, 189
SaqAI TTAA 1 cut(s) 66
ScaI AGTACT 1 cut(s) 253
SetI ASST 5 cut(s) 102, 122, 177, 202, 217
SmiMI CAYNNNNRTG 2 cut(s) 108, 189
SsiI CCGC 1 cut(s) 34
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 208
TatI WGTACW 2 cut(s) 112, 251
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.