Prupe.1G424900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001322
Physical Location & Seq
Reverse (-)
36601331 .. 36602365
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G424900.1

Sequence Viewer

Length: 270 bp
ATGGAGTGGTGGTCGCGAAAGATGAAGTATCCGGTTCAAAAATTTTGTAGCCGGGTCACTACCCGCCTTGGCATTCGCAAATCAGGGCTACCAAAGCTACAAAATGATATAAGGAGTTGTGAGTACGATGACGTGCATGTGATGTGGAGGATGCTCAACTCAAATGAGAAGACAGAGACGATTCAATTGGGAGGAAGCTCCAAGAAAAAACGTTTATCGAATTTATCAAATTGGTTTAAACGAACGCCTTTTGTTTGCCGTGCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.66

Weight (kDa)

10.3

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 16
AciI CCGC 1 cut(s) 64
AclI AACGTT 1 cut(s) 211
AcsI RAATTY 2 cut(s) 41, 220
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 2 cut(s) 38, 185
AjiI CACGTC 1 cut(s) 133
AluBI AGCT 2 cut(s) 97, 198
AluI AGCT 2 cut(s) 97, 198
Alw26I GTCTC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 41, 220
AsuC2I CCSGG 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 243
BciVI GTATCC 1 cut(s) 39
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 67
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 16
BsiSI CCGG 2 cut(s) 32, 52
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 72
Bsp68I TCGCGA 1 cut(s) 16
BspACI CCGC 1 cut(s) 64
BspFNI CGCG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 51
BstUI CGCG 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 176
BsuI GTATCC 1 cut(s) 39
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 156
BtuMI TCGCGA 1 cut(s) 16
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 137
CviJI RGCY 4 cut(s) 51, 88, 97, 198
CviKI_1 RGCY 4 cut(s) 51, 88, 97, 198
CviQI GTAC 1 cut(s) 124
DraI TTTAAA 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 1 cut(s) 140
FaiI YATR 2 cut(s) 110, 138
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 71
FokI GGATG 1 cut(s) 163
HapII CCGG 2 cut(s) 32, 52
Hin1II CATG 1 cut(s) 140
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 32, 52
Hpy188III TCNNGA 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 132, 211
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpySE526I ACGT 2 cut(s) 132, 211
Hsp92II CATG 1 cut(s) 140
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 3 cut(s) 45, 65, 69
LweI GCATC 1 cut(s) 141
MaeII ACGT 2 cut(s) 132, 211
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 1 cut(s) 181
MfeI CAATTG 1 cut(s) 185
MluCI AATT 4 cut(s) 41, 185, 220, 229
MnlI CCTC 2 cut(s) 141, 185
MseI TTAA 1 cut(s) 237
MspI CCGG 2 cut(s) 32, 52
MspR9I CCNGG 1 cut(s) 53
MssI GTTTAAAC 1 cut(s) 238
MunI CAATTG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 72
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 53
NlaIII CATG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 55
NruI TCGCGA 1 cut(s) 16
NspI RCATGY 1 cut(s) 140
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 181
PmeI GTTTAAAC 1 cut(s) 238
Psp1406I AACGTT 1 cut(s) 211
RruI TCGCGA 1 cut(s) 16
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 53
SetI ASST 4 cut(s) 99, 135, 200, 214
SfaNI GCATC 1 cut(s) 141
Sse9I AATT 4 cut(s) 41, 185, 220, 229
SsiI CCGC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 67
TaiI ACGT 2 cut(s) 135, 214
TaqI TCGA 1 cut(s) 218
TasI AATT 4 cut(s) 41, 185, 220, 229
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 38
XapI RAATTY 2 cut(s) 41, 220
XceI RCATGY 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.