MD13G1192200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001322
Physical Location & Seq
Forward (+)
16550849 .. 16551481
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1192200.v1.1.491

Sequence Viewer

Length: 201 bp
ATGGGGTGGCTGCACTCCCTCTTCTCTCCTCTTAAGAAGATGTGGTTTCGCCTCCATTCCGGTCCAAAGAAAAGAAGAGGGATTTACATTCTGTACGAGGATGTAAAATCCTGCCCCTGCGAGGATGTGCACGTCCTGTGGTCAATACTAGTGGAGGCCCATACACATACCACACCTTCTTTACCACCACCAAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.67

Weight (kDa)

9.39

Isoelectric Point (pI)

63.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 32
AhlI ACTAGT 1 cut(s) 148
AjiI CACGTC 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 132
Alw44I GTGCAC 1 cut(s) 128
AoxI GGCC 1 cut(s) 156
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 62, 157
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 62, 157
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 106, 130
BseLI CCNNNNNNNGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 132
BshFI GGCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 121
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 132
BspANI GGCC 1 cut(s) 158
BspTI CTTAAG 1 cut(s) 32
Bst6I CTCTTC 2 cut(s) 26, 70
BstAFI CTTAAG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 106, 130
BstSLI GKGCMC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 158
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 106, 130
Cfr13I GGNCC 2 cut(s) 62, 157
Csp6I GTAC 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 1 cut(s) 198
CviJI RGCY 2 cut(s) 10, 158
CviKI_1 RGCY 2 cut(s) 10, 158
CviQI GTAC 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 26, 70
EarI CTCTTC 2 cut(s) 26, 70
Eco47I GGWCC 1 cut(s) 62
FaeI CATG 1 cut(s) 201
FaiI YATR 3 cut(s) 162, 168, 199
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 2 cut(s) 113, 137
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 1 cut(s) 149
GluI GCNGC 1 cut(s) 11
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 201
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 13, 130
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 201
LpnPI CCDG 4 cut(s) 73, 124, 130, 149
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 132
MboII GAAGA 3 cut(s) 13, 49, 87
MhlI GDGCHC 1 cut(s) 132
MnlI CCTC 7 cut(s) 29, 39, 62, 71, 91, 115, 148
MseI TTAA 1 cut(s) 33
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 1 cut(s) 60
NlaIII CATG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 12
PspPI GGNCC 2 cut(s) 62, 157
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 11
Sau96I GGNCC 2 cut(s) 62, 157
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 135, 178
SgeI CNNG 8 cut(s) 72, 109, 123, 129, 133, 143, 148, 161
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SpeI ACTAGT 1 cut(s) 148
SspMI CTAG 1 cut(s) 149
TaiI ACGT 1 cut(s) 135
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 1 cut(s) 10
Vha464I CTTAAG 1 cut(s) 32
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 62
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.