pycom13g21000

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
17232949 .. 17233656
708 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21000.1

Sequence Viewer

Length: 330 bp
ATGGATTGGCTGCACAAGTTAAGGAAGGCATTGCTTGCTCTCTCTGCCACCCTCAAACTTCGTAAATCTCTTGGTGATGGTATTGCAGGGAGTGTTGGTGGCGAGTGTGGTGGTGGAATAGGTGGTCTGCTAAAGCTTCAGGATGATGTACAAATGTGTGGATATGAAGATGTACAGATTATGTGGAACATGCTCAGCAAAGCTCAACACGAAGAGGTGATCGTGTCATCAACCACGACAACAACAAAGCCAAATCATAAGCAAAGACATGCAAAGACCCCAGTTTTGGTCAGATTGGAAACTTGCTCAGTAGAGAAAGCCAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.89

Weight (kDa)

9.1

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 2 cut(s) 150, 174
AfiI CCNNNNNNNGG 1 cut(s) 286
AluBI AGCT 2 cut(s) 136, 203
AluI AGCT 2 cut(s) 136, 203
ApeKI GCWGC 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AsuHPI GGTGA 2 cut(s) 86, 229
BccI CCATC 1 cut(s) 71
BisI GCNGC 1 cut(s) 11
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 275
Bpu1102I GCTNAGC 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 29
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 208, 321
BseNI ACTGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 286
Bsp1407I TGTACA 2 cut(s) 148, 172
Bsp143I GATC 1 cut(s) 219
Bsp1720I GCTNAGC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 207, 320
BsrDI GCAATG 1 cut(s) 29
BsrGI TGTACA 2 cut(s) 148, 172
BsrI ACTGG 1 cut(s) 281
BssMI GATC 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 35
BstAUI TGTACA 2 cut(s) 148, 172
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 194, 307
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstNSI RCATGY 2 cut(s) 193, 272
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 36
Csp6I GTAC 2 cut(s) 149, 173
CviAII CATG 2 cut(s) 190, 269
CviJI RGCY 5 cut(s) 10, 136, 203, 250, 320
CviKI_1 RGCY 5 cut(s) 10, 136, 203, 250, 320
CviQI GTAC 2 cut(s) 149, 173
DdeI CTNAG 2 cut(s) 194, 307
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 122
FaeI CATG 2 cut(s) 193, 272
FaiI YATR 5 cut(s) 165, 182, 191, 258, 270
FatI CATG 2 cut(s) 189, 268
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 11
Hin1II CATG 2 cut(s) 193, 272
HindIII AAGCTT 1 cut(s) 134
HphI GGTGA 2 cut(s) 86, 229
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 13, 86, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
HpyF3I CTNAG 2 cut(s) 194, 307
Hsp92II CATG 2 cut(s) 193, 272
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 3 cut(s) 72, 125, 294
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 179, 224
MnlI CCTC 2 cut(s) 62, 208
MseI TTAA 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NdeII GATC 1 cut(s) 219
NlaIII CATG 2 cut(s) 193, 272
NspI RCATGY 2 cut(s) 193, 272
PkrI GCNGC 1 cut(s) 12
RsaI GTAC 2 cut(s) 150, 174
RsaNI GTAC 2 cut(s) 149, 173
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 1 cut(s) 219
SetI ASST 4 cut(s) 124, 138, 205, 219
TatI WGTACW 2 cut(s) 148, 172
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 180
XceI RCATGY 2 cut(s) 193, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.