Rroxscaffold_7G00159480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001322
Physical Location & Seq
Reverse (-)
2686183 .. 2687051
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159480.1

Sequence Viewer

Length: 279 bp
ATGGCGTTGTGGCCTAAGATGAAGTTTCCGATGCGGAGAACTTTTAACCGGGTCGCCACCCGCGTCGGACTCCGAAAAACCGGGCTACCGAAGCTGCGACACGATGTGAAGGCTTGCGAGTATGAGGACGTGCGTGTGATGTGGAACATACTCAACAAAAATGAGCCAGAGACTATTCGATTGGGAGGAAGCTCAAGGAAGAAGAAGAAGAAGATGCCTTCTTGCAATTTCTTGGATTGGGTTAATAAACGCACACCACTTATGTGCCGTGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.91

Weight (kDa)

10.65

Isoelectric Point (pI)

79.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 2 cut(s) 34, 61
AdeI CACNNNGTG 1 cut(s) 106
AjiI CACGTC 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 262
AluBI AGCT 2 cut(s) 94, 192
AluI AGCT 2 cut(s) 94, 192
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 94
AsuC2I CCSGG 2 cut(s) 50, 82
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 252
BcnI CCSGG 2 cut(s) 50, 82
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 50, 82
BmgBI CACGTC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 50, 82
BmsI GCATC 2 cut(s) 21, 204
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 2 cut(s) 50, 82
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 49, 81
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 13
BspACI CCGC 2 cut(s) 34, 61
BspANI GGCC 1 cut(s) 13
BspFNI CGCG 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 48, 80
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 13
BtrI CACGTC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 115
CseI GACGC 1 cut(s) 52
CviJI RGCY 6 cut(s) 13, 85, 94, 113, 166, 192
CviKI_1 RGCY 6 cut(s) 13, 85, 94, 113, 166, 192
DdeI CTNAG 1 cut(s) 15
DraIII CACNNNGTG 1 cut(s) 106
FaiI YATR 3 cut(s) 123, 149, 263
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 13
HapII CCGG 2 cut(s) 49, 81
HgaI GACGC 1 cut(s) 52
HinfI GANTC 1 cut(s) 69
HpaII CCGG 2 cut(s) 49, 81
Hpy188I TCNGA 3 cut(s) 30, 68, 74
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 103, 228
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 129
LpnPI CCDG 3 cut(s) 62, 94, 180
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 21, 204
MaeII ACGT 1 cut(s) 129
MboII GAAGA 5 cut(s) 211, 214, 217, 220, 223
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 2 cut(s) 118, 179
MseI TTAA 2 cut(s) 45, 243
MslI CAYNNNNRTG 1 cut(s) 262
MspI CCGG 2 cut(s) 49, 81
MspR9I CCNGG 2 cut(s) 50, 82
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 50, 82
OliI CACNNNNGTG 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 2 cut(s) 45, 243
SatI GCNGC 1 cut(s) 95
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 50, 82
SetI ASST 3 cut(s) 96, 132, 194
SfaNI GCATC 2 cut(s) 21, 204
SmiMI CAYNNNNRTG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 226
SsiI CCGC 2 cut(s) 34, 61
StyD4I CCNGG 2 cut(s) 48, 80
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 226
Tru1I TTAA 2 cut(s) 45, 243
Tru9I TTAA 2 cut(s) 45, 243
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.