Rh2CG337100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001322
Physical Location & Seq
Forward (+)
44622970 .. 44647776
24807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG337100.1

Sequence Viewer

Length: 318 bp
ATGGAGTTTTGGGACAAGATGATCTTCCCTGTCCGCCGTGTCTGGCTTGCTGTCTCTACTCGTGTTAAGGCTCGCAAAAATGGTGCTGGTCTGTTGAAGCTTCACGACGATGTACAAACTTGTGGCTATCAAGATGTGCAAGTGATGTGGCAGATGCTGAGCAGAGAAGCTGAGCTGATAAATCACCACCACGCCAAACGTAAACAGCGACCCTTCTGGAGAGTTTTTGAATGGCTTGGATCAAAAGTTCAAAACCCCGGGCTGGATATCGGACTCTTAATTTGCGAGACTCAGAGTGATCATGGATCCAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.33

Weight (kDa)

9.56

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AclWI GGATC 3 cut(s) 247, 300, 313
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 3 cut(s) 97, 230, 251
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 3 cut(s) 100, 170, 175
AluI AGCT 3 cut(s) 100, 170, 175
Alw26I GTCTC 2 cut(s) 58, 281
AlwI GGATC 3 cut(s) 247, 300, 313
AlwNI CAGNNNCTG 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AsuC2I CCSGG 2 cut(s) 258, 259
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 257
BamHI GGATCC 1 cut(s) 305
BauI CACGAG 1 cut(s) 60
BceAI ACGGC 1 cut(s) 21
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 2 cut(s) 258, 259
BcoDI GTCTC 2 cut(s) 58, 281
BlpI GCTNAGC 2 cut(s) 158, 171
Bme1390I CCNGG 2 cut(s) 258, 259
BmeT110I CYCGRG 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 258, 259
BmsI GCATC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 238
Bpu1102I GCTNAGC 2 cut(s) 158, 171
BpuMI CCSGG 2 cut(s) 258, 259
BsaJI CCNNGG 2 cut(s) 256, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 256, 257
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 3 cut(s) 149, 162, 305
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 58, 281
BsmFI GGGAC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 21, 239, 298, 305
Bsp1720I GCTNAGC 2 cut(s) 158, 171
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 3 cut(s) 150, 163, 304
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 3 cut(s) 247, 300, 313
BsrGI TGTACA 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 256, 257
BssMI GATC 4 cut(s) 21, 239, 298, 305
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 48, 73
BstDEI CTNAG 3 cut(s) 158, 171, 291
BstKTI GATC 4 cut(s) 24, 242, 301, 308
BstMAI GTCTC 2 cut(s) 58, 281
BstMBI GATC 4 cut(s) 21, 239, 298, 305
BstSCI CCNGG 2 cut(s) 256, 257
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 48, 73
CaiI CAGNNNCTG 1 cut(s) 157
Cfr9I CCCGGG 1 cut(s) 257
Csp6I GTAC 1 cut(s) 113
CspCI CAANNNNNGTGG 2 cut(s) 128, 163
CviAII CATG 1 cut(s) 302
CviJI RGCY 8 cut(s) 46, 71, 100, 126, 170, 175, 235, 262
CviKI_1 RGCY 8 cut(s) 46, 71, 100, 126, 170, 175, 235, 262
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 3 cut(s) 158, 171, 291
DpnI GATC 4 cut(s) 23, 241, 300, 307
DpnII GATC 4 cut(s) 21, 239, 298, 305
EciI GGCGGA 1 cut(s) 23
Eco32I GATATC 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 257
EcoRV GATATC 1 cut(s) 268
FaeI CATG 1 cut(s) 305
FaiI YATR 1 cut(s) 303
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 238
HapII CCGG 1 cut(s) 258
Hin1II CATG 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 273, 289
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 272, 294
Hpy188III TCNNGA 3 cut(s) 104, 131, 217
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 3 cut(s) 158, 171, 291
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 4 cut(s) 21, 239, 298, 305
LpnPI CCDG 6 cut(s) 28, 42, 72, 202, 248, 271
LweI GCATC 1 cut(s) 144
MaeII ACGT 1 cut(s) 199
MalI GATC 4 cut(s) 23, 241, 300, 307
MboI GATC 4 cut(s) 21, 239, 298, 305
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 305
MluCI AATT 1 cut(s) 279
MlyI GAGTC 2 cut(s) 267, 283
MseI TTAA 2 cut(s) 66, 278
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 258, 259
NciI CCSGG 2 cut(s) 258, 259
NdeII GATC 4 cut(s) 21, 239, 298, 305
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PleI GAGTC 2 cut(s) 267, 283
PpsI GAGTC 2 cut(s) 267, 283
PspN4I GGNNCC 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 305
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 2 cut(s) 66, 278
Sau3AI GATC 4 cut(s) 21, 239, 298, 305
SchI GAGTC 2 cut(s) 267, 283
ScrFI CCNGG 2 cut(s) 258, 259
SetI ASST 4 cut(s) 102, 172, 177, 202
SfaNI GCATC 1 cut(s) 144
SmaI CCCGGG 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 256, 257
TaiI ACGT 1 cut(s) 202
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 112
Tru1I TTAA 2 cut(s) 66, 278
Tru9I TTAA 2 cut(s) 66, 278
TspMI CCCGGG 1 cut(s) 257
XmaI CCCGGG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.