Rorug04G0009700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001322
Physical Location & Seq
Reverse (-)
1533024 .. 1533766
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0009700.1

Sequence Viewer

Length: 663 bp
ATGCTCCTATTTGATGCCATAGTTGTCTTTTCTCAGAGAATTGATTATTGCCATCTTGTTACAATCAATCCAGAGTATCGCAAGTTTCGCGACGTGGGAATTAGTCCTGAAATGATGGCTGTTTATGACAACATGTTCAGGGGTAGCACAGCCCTAGGTCACTTTGTCATGATTCGCTCGGCTACTATAGATATTGAAGAGGTTGTGGAGGATTCAGAGCATAACTTAATTTCTGGAGATGATGAAGAGGATTCTGACCAAGATAATGAACGTAGAGGCAAAAAGAGAACAAATTTGGAGCGCCAAACAGAGGCTGATAAAGAAAAAAAAGGAAAAGGAGTTATGGGAGGGCCAAAGGGGAAGAAAGAAAAGGTGGGAGGTGCGGCGAAATTGTCTAAACAAATCGATCGTCTTGTTGATGTAGTCGAGAGTAGGAGTACAGCCACATCTGTACATGATAATGGTACCTCACCAGGAACTAGTATTCAAGAGGTGATGAGAGTTGTTGCAACATTACCAGGAGCAGAAACCGGTACTAAGATATGGTGGTTTGCAACGGAGTTGTTCTGCTCTCAGGAGAAGCGAGAGATGTTTTCTATTATGACAGATGCTGATCTCAAGCTCCAGTTTCTGATTCTTAATCAGAAAAAAGCTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.74

Weight (kDa)

5.39

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 464
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 383
AcsI RAATTY 1 cut(s) 292
AfaI GTAC 4 cut(s) 439, 453, 466, 535
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 132
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 2 cut(s) 197, 488
AhlI ACTAGT 1 cut(s) 479
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 2 cut(s) 472, 517
AluBI AGCT 2 cut(s) 622, 653
AluI AGCT 2 cut(s) 622, 653
AlwNI CAGNNNCTG 3 cut(s) 314, 611, 631
AoxI GGCC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
AsiGI ACCGGT 1 cut(s) 530
Asp718I GGTACC 1 cut(s) 464
AspA2I CCTAGG 1 cut(s) 154
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 462, 505
AvrII CCTAGG 1 cut(s) 154
BanI GGYRCC 1 cut(s) 464
BccI CCATC 2 cut(s) 60, 109
BciT130I CCWGG 2 cut(s) 474, 519
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 2 cut(s) 155, 480
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 304
BisI GCNGC 1 cut(s) 384
BlnI CCTAGG 1 cut(s) 154
BlsI GCNGC 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 474, 519
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 2 cut(s) 474, 519
BmsI GCATC 2 cut(s) 4, 598
BpmI CTGGAG 2 cut(s) 255, 608
BpuEI CTTGAG 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 530
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 625
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 2 cut(s) 474, 519
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 154
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 47, 587
BseNI ACTGG 1 cut(s) 625
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 464
BshTI ACCGGT 1 cut(s) 530
BshVI ATCGAT 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 409
BsiSI CCGG 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 310
BsnI GGCC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 2 cut(s) 406, 613
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 1 cut(s) 383
BspANI GGCC 1 cut(s) 352
BspCNI CTCAG 2 cut(s) 46, 586
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 530
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 1 cut(s) 625
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 2 cut(s) 406, 613
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 2 cut(s) 474, 519
Bst6I CTCTTC 2 cut(s) 192, 240
BstAUI TGTACA 1 cut(s) 451
BstDEI CTNAG 3 cut(s) 33, 537, 573
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 409, 616
BstMBI GATC 2 cut(s) 406, 613
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 2 cut(s) 474, 519
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 472, 517
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 1 cut(s) 352
BsuTUI ATCGAT 1 cut(s) 405
BtrI CACGTC 1 cut(s) 94
BtuMI TCGCGA 1 cut(s) 90
CaiI CAGNNNCTG 3 cut(s) 314, 611, 631
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 4 cut(s) 438, 452, 465, 534
CspAI ACCGGT 1 cut(s) 530
CviAII CATG 3 cut(s) 133, 169, 455
CviJI RGCY 8 cut(s) 119, 152, 182, 314, 352, 443, 622, 653
CviKI_1 RGCY 8 cut(s) 119, 152, 182, 314, 352, 443, 622, 653
CviQI GTAC 4 cut(s) 438, 452, 465, 534
DdeI CTNAG 3 cut(s) 33, 537, 573
DpnI GATC 2 cut(s) 408, 615
DpnII GATC 2 cut(s) 406, 613
Eam1104I CTCTTC 2 cut(s) 192, 240
EarI CTCTTC 2 cut(s) 192, 240
Eco130I CCWWGG 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 472, 517
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 136, 172, 458
FatI CATG 3 cut(s) 132, 168, 454
Fnu4HI GCNGC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 2 cut(s) 155, 480
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 384
GsuI CTGGAG 2 cut(s) 255, 608
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 1 cut(s) 352
HapII CCGG 1 cut(s) 531
HhaI GCGC 1 cut(s) 303
Hin1II CATG 3 cut(s) 136, 172, 458
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 4 cut(s) 172, 212, 251, 634
HpaII CCGG 1 cut(s) 531
HphI GGTGA 2 cut(s) 462, 505
Hpy188I TCNGA 5 cut(s) 36, 217, 256, 633, 645
Hpy188III TCNNGA 8 cut(s) 71, 89, 107, 169, 234, 427, 488, 575
Hpy99I CGWCG 1 cut(s) 95
HpyCH4IV ACGT 2 cut(s) 93, 271
HpyCH4V TGCA 2 cut(s) 509, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 3 cut(s) 33, 537, 573
HpySE526I ACGT 2 cut(s) 93, 271
Hsp92II CATG 3 cut(s) 136, 172, 458
HspAI GCGC 1 cut(s) 301
KpnI GGTACC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 406, 613
LmnI GCTCC 4 cut(s) 9, 298, 521, 627
LweI GCATC 2 cut(s) 4, 598
MaeI CTAG 2 cut(s) 155, 480
MaeII ACGT 2 cut(s) 93, 271
MaeIII GTNAC 2 cut(s) 58, 158
MalI GATC 2 cut(s) 408, 615
MboI GATC 2 cut(s) 406, 613
MboII GAAGA 3 cut(s) 209, 257, 373
MluCI AATT 6 cut(s) 39, 99, 228, 292, 389, 658
MnlI CCTC 9 cut(s) 193, 202, 241, 269, 304, 341, 371, 478, 484
MseI TTAA 3 cut(s) 227, 639, 661
MslI CAYNNNNRTG 1 cut(s) 459
MspI CCGG 1 cut(s) 531
MspR9I CCNGG 2 cut(s) 474, 519
MvaI CCWGG 2 cut(s) 474, 519
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 2 cut(s) 406, 613
NlaIII CATG 3 cut(s) 136, 172, 458
NlaIV GGNNCC 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 158
NruI TCGCGA 1 cut(s) 90
NspI RCATGY 1 cut(s) 136
PagI TCATGA 1 cut(s) 168
PciI ACATGT 1 cut(s) 132
PfeI GAWTC 4 cut(s) 172, 212, 251, 634
PinAI ACCGGT 1 cut(s) 530
PkrI GCNGC 1 cut(s) 385
Ple19I CGATCG 1 cut(s) 409
PscI ACATGT 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 472, 517
PspGI CCWGG 2 cut(s) 472, 517
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 1 cut(s) 350
PstNI CAGNNNCTG 3 cut(s) 314, 611, 631
PvuI CGATCG 1 cut(s) 409
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 4 cut(s) 439, 453, 466, 535
RsaNI GTAC 4 cut(s) 438, 452, 465, 534
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 3 cut(s) 227, 639, 661
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 406, 613
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 474, 519
SfaNI GCATC 2 cut(s) 4, 598
SfcI CTRYAG 1 cut(s) 186
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SpeI ACTAGT 1 cut(s) 479
Sse9I AATT 6 cut(s) 39, 99, 228, 292, 389, 658
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 155, 480
StyD4I CCNGG 2 cut(s) 472, 517
StyI CCWWGG 1 cut(s) 154
TaiI ACGT 2 cut(s) 96, 274
TaqI TCGA 2 cut(s) 405, 426
TasI AATT 6 cut(s) 39, 99, 228, 292, 389, 658
TatI WGTACW 2 cut(s) 437, 451
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 4 cut(s) 172, 212, 251, 634
Tru1I TTAA 3 cut(s) 227, 639, 661
Tru9I TTAA 3 cut(s) 227, 639, 661
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 258, 282
TspGWI ACGGA 1 cut(s) 572
XapI RAATTY 1 cut(s) 292
XceI RCATGY 1 cut(s) 136
XmaJI CCTAGG 1 cut(s) 154
XspI CTAG 2 cut(s) 155, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.