Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001322

Physical Location & Seq

Genomic Coordinates Reverse (-)

17222660 .. 17223168

Gene Structure 509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG095800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATTGGTTGCTTAAGCTAAGGAGAGCTTTGCTTGCCTTCTCCGCCAGACTCAAGCATCGTAAATCTGTAGGTGGTGCTGGTGGTGATCAGTGTAGTGGAGTAGGTGGTCTGCTAAAGCTTAAAGATGATGTGCAAATGTGTGGGTACCAAGATGTACACATTATGTGGAACATGTTGAGCAAAGCTCAACAGGAGGAGATTCAGATCATGGCAAAAACTCGGTCACCTACCAAGCCGAATCAGAAGCAACGAAGACGACAACGATCATCATGTTCTTTCAGGACTTTCTTTGGACCAGCCACACAGAGCTGCGTCTTGGTTAGACTAGAATCCAATTCTTCTTCAATCTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.39

Weight (kDa)

10.35

Isoelectric Point (pI)

69.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43150
fragaria_vesca	FvH4_4g06680 FvH4_4g15440 FvH4_4g15440 FvH4_6g28000
malus_domestica	MD09G1230400.v1.1 MD13G1192200.v1.1 MD15G1072200.v1.1 MD15G1072300.v1.1 MD16G1192800.v1.1 MD17G1229300.v1.1
prunus_persica	Prupe.1G012900_v2.0.a1 Prupe.1G012900_v2.0.a1 Prupe.1G069600_v2.0.a1 Prupe.1G424900_v2.0.a1 Prupe.3G106900_v2.0.a1
pyrus_communis	pycom09g14960 pycom13g21000 pycom15g06760 pycom16g16270 pycom17g23170
rosa_chinensis	RchiOBHm_Chr2g0131671 RchiOBHm_Chr4g0416351 RchiOBHm_Chr6g0284921 RchiOBHm_Chr6g0309331
rosa_laevigata	RLG00000004932 RLG00000009341
rosa_multiflora	Rmu_co8318957.1_g000001 Rmu_co8501331.1_g000001 Rmu_sc0001260.1_g000004 Rmu_sc0005217.1_g000009 Rmu_sc0015692.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112710 Rroxscaffold_5G00343560 Rroxscaffold_5G00360200 Rroxscaffold_7G00159480
rosa_rugosa	Rorug02G0298900 Rorug04G0009700 Rorug06G0371100
rosa_samantha	Rh2AG351500 Rh2BG358400 Rh2CG337100 Rh2DG375800 Rh4AG087600 Rh4AG203300 Rh4BG084200 Rh4CG095800 Rh4CG214700 Rh4DG079100 Rh6BG493700 Rh6CG498600
rosa_wichuraiana	Rw2G028550 Rw4G017190 Rw6G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	147
AciI	CCGC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	149, 159
AflII	CTTAAG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	348
AluBI	AGCT	5 cut(s)	19, 29, 121, 188, 312
AluI	AGCT	5 cut(s)	19, 29, 121, 188, 312
ApeKI	GCWGC	1 cut(s)	312
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp718I	GGTACC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	98, 219
AvaII	GGWCC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	149
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	262
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	206
BseJI	GATNNNNATC	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	147
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	88, 207, 266
BspACI	CCGC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	147
BspTI	CTTAAG	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	157
BssMI	GATC	3 cut(s)	88, 207, 266
BstAFI	CTTAAG	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	225
BstKTI	GATC	3 cut(s)	91, 210, 269
BstMBI	GATC	3 cut(s)	88, 207, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 44
BstNSI	RCATGY	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	299
BstV2I	GAAGAC	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	148, 158
CviAII	CATG	3 cut(s)	175, 211, 273
CviJI	RGCY	7 cut(s)	19, 29, 121, 188, 238, 302, 312
CviKI_1	RGCY	7 cut(s)	19, 29, 121, 188, 238, 302, 312
CviQI	GTAC	2 cut(s)	148, 158
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	90, 209, 268
DpnII	GATC	3 cut(s)	88, 207, 266
EciI	GGCGGA	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	225
FaeI	CATG	3 cut(s)	178, 214, 276
FaiI	YATR	4 cut(s)	167, 176, 212, 274
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FatI	CATG	3 cut(s)	174, 210, 272
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	1 cut(s)	313
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	178, 214, 276
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	4 cut(s)	51, 202, 241, 332
HphI	GGTGA	2 cut(s)	98, 219
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	207, 246
Hpy188III	TCNNGA	2 cut(s)	283, 352
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 44
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	178, 214, 276
KpnI	GGTACC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	88, 207, 266
LpnPI	CCDG	5 cut(s)	61, 66, 179, 268, 312
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	3 cut(s)	90, 209, 268
MboI	GATC	3 cut(s)	88, 207, 266
MboII	GAAGA	3 cut(s)	267, 333, 336
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	1 cut(s)	190
MseI	TTAA	2 cut(s)	15, 123
MspCI	CTTAAG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	35, 44
NdeII	GATC	3 cut(s)	88, 207, 266
NlaIII	CATG	3 cut(s)	178, 214, 276
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	178
PciI	ACATGT	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	202, 241, 332
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	149, 159
RsaNI	GTAC	2 cut(s)	148, 158
SaqAI	TTAA	2 cut(s)	15, 123
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	3 cut(s)	88, 207, 266
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	45
SetI	ASST	8 cut(s)	21, 31, 76, 109, 123, 190, 232, 314
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	3 cut(s)	14, 53, 352
SmoI	CTYRAG	3 cut(s)	14, 53, 352
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	1 cut(s)	329
TaqII	GACCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	337
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	3 cut(s)	202, 241, 332
Tru1I	TTAA	2 cut(s)	15, 123
Tru9I	TTAA	2 cut(s)	15, 123
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	225
TspRI	CASTG	1 cut(s)	98
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.