Rh4BG084200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001322
Physical Location & Seq
Reverse (-)
14548960 .. 14552501
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG084200.1

Sequence Viewer

Length: 360 bp
ATGGATTGGTTGCTTAAGCTAAGGAGAGCTTTGCTTGCCTTCTCTGCCAGACTCAAGCATCGAAAATCTGTAGGTGGTGCTGGTGGTGATCAGTGTGGTGGAGTAGGTGGTCTGCTAAAGCTTCAAGATGATGTGCAAATGTGTGGGTACCAAGATGTACACATTATGTGGAACATGTTGAGCAAAACTCAACAGGAGGAGATTCAGATCATGGCAAAAACTCAGTCACCTACCAAGCCGAATCAGAAGCAACGAAGACGACAACGATCATCATGTTCTTTCAGGACTTTCTTTGGACCAGCCACACAGAGCTGCATCTTGGTTAGACTAGAATCCAATGCTTCTTCAATCTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

10.13

Isoelectric Point (pI)

74.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AfaI GTAC 2 cut(s) 149, 159
AflII CTTAAG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 2 cut(s) 125, 348
AluBI AGCT 4 cut(s) 19, 29, 121, 312
AluI AGCT 4 cut(s) 19, 29, 121, 312
ApeKI GCWGC 1 cut(s) 312
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 98, 219
AvaII GGWCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 299
BclI TGATCA 1 cut(s) 88
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 69
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 149
BmsI GCATC 2 cut(s) 67, 324
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 172, 204
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 206
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 3 cut(s) 88, 207, 266
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 157
BssMI GATC 3 cut(s) 88, 207, 266
BstAFI CTTAAG 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 20, 222
BstKTI GATC 3 cut(s) 91, 210, 269
BstMBI GATC 3 cut(s) 88, 207, 266
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstNSI RCATGY 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 148, 158
CviAII CATG 3 cut(s) 175, 211, 273
CviJI RGCY 6 cut(s) 19, 29, 121, 238, 302, 312
CviKI_1 RGCY 6 cut(s) 19, 29, 121, 238, 302, 312
CviQI GTAC 2 cut(s) 148, 158
DdeI CTNAG 2 cut(s) 20, 222
DpnI GATC 3 cut(s) 90, 209, 268
DpnII GATC 3 cut(s) 88, 207, 266
Eco47I GGWCC 1 cut(s) 296
FaeI CATG 3 cut(s) 178, 214, 276
FaiI YATR 4 cut(s) 167, 176, 212, 274
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FatI CATG 3 cut(s) 174, 210, 272
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 1 cut(s) 329
GluI GCNGC 1 cut(s) 313
Hin1II CATG 3 cut(s) 178, 214, 276
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 4 cut(s) 51, 202, 241, 332
HphI GGTGA 2 cut(s) 98, 219
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 207, 246
Hpy188III TCNNGA 3 cut(s) 125, 283, 352
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 136, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
HpyF3I CTNAG 2 cut(s) 20, 222
Hsp92II CATG 3 cut(s) 178, 214, 276
KpnI GGTACC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 88, 207, 266
LpnPI CCDG 5 cut(s) 61, 66, 179, 268, 312
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 2 cut(s) 67, 324
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 225
MalI GATC 3 cut(s) 90, 209, 268
MboI GATC 3 cut(s) 88, 207, 266
MboII GAAGA 2 cut(s) 267, 336
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 1 cut(s) 190
MseI TTAA 1 cut(s) 15
MspCI CTTAAG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NdeII GATC 3 cut(s) 88, 207, 266
NlaIII CATG 3 cut(s) 178, 214, 276
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 225
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 3 cut(s) 202, 241, 332
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PscI ACATGT 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 296
RsaI GTAC 2 cut(s) 149, 159
RsaNI GTAC 2 cut(s) 148, 158
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 3 cut(s) 88, 207, 266
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 1 cut(s) 45
SetI ASST 7 cut(s) 21, 31, 76, 109, 123, 232, 314
SfaNI GCATC 2 cut(s) 67, 324
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 296
SmlI CTYRAG 3 cut(s) 14, 53, 352
SmoI CTYRAG 3 cut(s) 14, 53, 352
SspMI CTAG 1 cut(s) 329
TaqI TCGA 1 cut(s) 61
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 3 cut(s) 202, 241, 332
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 98
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 225
TspRI CASTG 1 cut(s) 98
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 296
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.