Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001322

Physical Location & Seq

Genomic Coordinates Forward (+)

63755884 .. 63757212

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGAGGAACCTCCGCGTCTTGAGCTCCGGCCGCAAGAGCCGCAAGGCTCACTTCACAGCGCCATCGTTCTGTCGGCGTCGGGTGTGGCTTGGACGCGGCCGCAGAGGACGACGAGCTTGGAGGCATCAGACGGCTACGGCTGGTCGGAGTCGTCGTGGATTAGGGAGCGGAGATCGGAGACTTCGACGGAGGGGCTTGGCGGGTCTTGCGGAGGGCGGAGGAATTGGATTTGAAGCTAAGGAAGGATTAAAGGAATCGACGGAGGCGAAGGCGGCGATGGTGCCCAAAACGGCACCGTCTAAGGAGAGGGCGAACTGGGAGATTAGGGAGGCTAGGGGTATGCTCGTTCGACGACTTTGCGGTGGTGGTGTCTACATGTGGCGATGTGGTGGTTTAGAGGTTACTGTGGGCGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

11.85

Isoelectric Point (pI)

73.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43150
fragaria_vesca	FvH4_4g06680 FvH4_4g15440 FvH4_4g15440 FvH4_6g28000
malus_domestica	MD09G1230400.v1.1 MD13G1192200.v1.1 MD15G1072200.v1.1 MD15G1072300.v1.1 MD16G1192800.v1.1 MD17G1229300.v1.1
prunus_persica	Prupe.1G012900_v2.0.a1 Prupe.1G012900_v2.0.a1 Prupe.1G069600_v2.0.a1 Prupe.1G424900_v2.0.a1 Prupe.3G106900_v2.0.a1
pyrus_communis	pycom09g14960 pycom13g21000 pycom15g06760 pycom16g16270 pycom17g23170
rosa_chinensis	RchiOBHm_Chr2g0131671 RchiOBHm_Chr4g0416351 RchiOBHm_Chr6g0284921 RchiOBHm_Chr6g0309331
rosa_laevigata	RLG00000004932 RLG00000009341
rosa_multiflora	Rmu_co8318957.1_g000001 Rmu_co8501331.1_g000001 Rmu_sc0001260.1_g000004 Rmu_sc0005217.1_g000009 Rmu_sc0015692.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112710 Rroxscaffold_5G00343560 Rroxscaffold_5G00360200 Rroxscaffold_7G00159480
rosa_rugosa	Rorug02G0298900 Rorug04G0009700 Rorug06G0371100
rosa_samantha	Rh2AG351500 Rh2BG358400 Rh2CG337100 Rh2DG375800 Rh4AG087600 Rh4AG203300 Rh4BG084200 Rh4CG095800 Rh4CG214700 Rh4DG079100 Rh6BG493700 Rh6CG498600
rosa_wichuraiana	Rw2G028550 Rw4G017190 Rw6G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	283, 295
AccBSI	CCGCTC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	2 cut(s)	18, 99
AcoI	YGGCCR	2 cut(s)	31, 100
AcyI	GRCGYC	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	3 cut(s)	27, 119, 239
AluI	AGCT	3 cut(s)	27, 119, 239
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	31, 100
AspLEI	GCGC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	2 cut(s)	283, 295
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	2 cut(s)	73, 274
BceAI	ACGGC	3 cut(s)	150, 156, 309
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	5 cut(s)	34, 43, 100, 103, 276
BlsI	GCNGC	5 cut(s)	35, 44, 101, 104, 277
BmiI	GGNNCC	3 cut(s)	11, 285, 297
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	328
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bse1I	ACTGG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	288
BseX3I	CGGCCG	2 cut(s)	31, 100
Bsh1236I	CGCG	2 cut(s)	18, 99
Bsh1285I	CGRYCG	2 cut(s)	34, 103
BshFI	GGCC	2 cut(s)	33, 102
BshNI	GGYRCC	2 cut(s)	283, 295
BsiEI	CGRYCG	2 cut(s)	34, 103
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	33, 102
Bsp1286I	GDGCHC	2 cut(s)	29, 288
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	33, 102
BspFNI	CGCG	2 cut(s)	18, 99
BspLI	GGNNCC	3 cut(s)	11, 285, 297
BspT107I	GGYRCC	2 cut(s)	283, 295
BsrBI	CCGCTC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	323
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	300, 409
BstACI	GRCGYC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	240, 303
BstFNI	CGCG	2 cut(s)	18, 99
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	175
BstMCI	CGRYCG	2 cut(s)	34, 103
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 33, 39, 42, 209, 275
BstNSI	RCATGY	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	2 cut(s)	18, 99
BstZI	CGGCCG	2 cut(s)	31, 100
BsuRI	GGCC	2 cut(s)	33, 102
BtgZI	GCGATG	2 cut(s)	293, 400
CciNI	GCGGCCGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	64
CseI	GACGC	3 cut(s)	7, 68, 105
CviAII	CATG	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	240, 303
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	2 cut(s)	31, 100
EagI	CGGCCG	2 cut(s)	31, 100
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	27
EclXI	CGGCCG	2 cut(s)	31, 100
Eco24I	GRGCYC	1 cut(s)	29
Eco52I	CGGCCG	2 cut(s)	31, 100
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	382
FaiI	YATR	2 cut(s)	344, 380
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	5 cut(s)	34, 43, 100, 103, 276
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	5 cut(s)	34, 43, 100, 103, 276
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	5 cut(s)	34, 43, 100, 103, 276
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	33, 102
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	3 cut(s)	7, 68, 105
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	151, 257
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	132, 150, 180
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	6 cut(s)	84, 117, 159, 192, 265, 357
HpyAV	CCTTC	2 cut(s)	239, 265
HpyCH4III	ACNGT	2 cut(s)	300, 409
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 33, 39, 42, 209, 275
HpyF3I	CTNAG	2 cut(s)	240, 303
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	32, 168
LpnPI	CCDG	3 cut(s)	43, 129, 304
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	1 cut(s)	177
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	29, 288
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	128
MseI	TTAA	2 cut(s)	251, 421
MspI	CCGG	1 cut(s)	30
MvnI	CGCG	2 cut(s)	18, 99
MwoI	GCNNNNNNNGC	6 cut(s)	24, 33, 39, 42, 209, 275
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	3 cut(s)	11, 285, 297
NotI	GCGGCCGC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	3 cut(s)	154, 184, 266
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	5 cut(s)	35, 44, 101, 104, 277
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	29
PspN4I	GGNNCC	3 cut(s)	11, 285, 297
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	251, 421
SatI	GCNGC	5 cut(s)	34, 43, 100, 103, 276
Sau3AI	GATC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	29, 288
SetI	ASST	5 cut(s)	15, 29, 121, 241, 405
SfaNI	GCATC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	1 cut(s)	225
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	300, 409
TaqI	TCGA	3 cut(s)	187, 260, 352
TasI	AATT	1 cut(s)	225
TauI	GCSGC	5 cut(s)	36, 45, 102, 105, 278
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	251, 421
Tru9I	TTAA	2 cut(s)	251, 421
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	205, 278
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.