MD17G1229300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001322
Physical Location & Seq
Reverse (-)
27690139 .. 27694376
4238 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1229300.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGATTTTTGGGACAAGATGATCTTCCCTGTCCGCCGTGTTTGGCTTGCCGTCTCTACTCGTGTCAAGGATCGCAAAAATGGTGATGGGCTTTTGAAGCTTCACGATGATGTACAAACATGTGGGTATCAAGATGTGCAAGTGATGTGGCAGATGCTGAGTGGAGACAGAGACAACCACCCGCCGGCCAAACGCAAGCACCAAAGACATAGACCCTTCCGGAGAATTTTCGAGTGGTCTTCTAACAATAATAGTAGTAAAACCTCACCGCTCTCTTCAAATCATGCATGCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.56

Weight (kDa)

10.02

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 292
AccBSI CCGCTC 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 219
AciI CCGC 3 cut(s) 34, 182, 269
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 225
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 2 cut(s) 97, 279
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 3 cut(s) 58, 159, 165
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 219
AoxI GGCC 1 cut(s) 186
ApoI RAATTY 1 cut(s) 225
AspLEI GCGC 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 95, 258
BauI CACGAG 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 21, 35
BcoDI GTCTC 3 cut(s) 58, 159, 165
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 149
BshFI GGCC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 185, 220
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 3 cut(s) 58, 159, 165
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 2 cut(s) 21, 70
BspACI CCGC 3 cut(s) 34, 182, 269
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 219
BspPI GGATC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 184
BssMI GATC 2 cut(s) 21, 70
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 4 cut(s) 48, 186, 197, 289
BstDEI CTNAG 1 cut(s) 158
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 2 cut(s) 24, 73
BstMAI GTCTC 3 cut(s) 58, 159, 165
BstMBI GATC 2 cut(s) 21, 70
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 123, 291
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 188
Cac8I GCNNGC 4 cut(s) 48, 186, 197, 289
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 184
Csp6I GTAC 1 cut(s) 113
CspCI CAANNNNNGTGG 2 cut(s) 128, 163
CviAII CATG 3 cut(s) 120, 284, 288
CviJI RGCY 4 cut(s) 46, 91, 100, 188
CviKI_1 RGCY 4 cut(s) 46, 91, 100, 188
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 23, 72
DpnII GATC 2 cut(s) 21, 70
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 3 cut(s) 123, 287, 291
FaiI YATR 5 cut(s) 121, 210, 285, 289, 295
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 119, 283, 287
FauI CCCGC 1 cut(s) 189
FspAI RTGCGCAY 1 cut(s) 292
FspI TGCGCA 1 cut(s) 292
GlaI GCGC 1 cut(s) 292
HaeIII GGCC 1 cut(s) 188
HapII CCGG 2 cut(s) 185, 220
HhaI GCGC 1 cut(s) 293
Hin1II CATG 3 cut(s) 123, 287, 291
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 98
HpaII CCGG 2 cut(s) 185, 220
HphI GGTGA 2 cut(s) 95, 258
Hpy188III TCNNGA 3 cut(s) 104, 131, 220
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 139, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 3 cut(s) 123, 287, 291
HspAI GCGC 1 cut(s) 291
Kpn2I TCCGGA 1 cut(s) 219
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 21, 70
LpnPI CCDG 3 cut(s) 42, 198, 233
LweI GCATC 1 cut(s) 144
MalI GATC 2 cut(s) 23, 72
MbiI CCGCTC 1 cut(s) 271
MboI GATC 2 cut(s) 21, 70
MboII GAAGA 3 cut(s) 16, 231, 267
MluCI AATT 1 cut(s) 225
MnlI CCTC 1 cut(s) 274
Mph1103I ATGCAT 1 cut(s) 289
MroI TCCGGA 1 cut(s) 219
MroNI GCCGGC 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 2 cut(s) 185, 220
MwoI GCNNNNNNNGC 1 cut(s) 97
NaeI GCCGGC 1 cut(s) 186
NdeII GATC 2 cut(s) 21, 70
NgoMIV GCCGGC 1 cut(s) 184
NlaIII CATG 3 cut(s) 123, 287, 291
NsbI TGCGCA 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 2 cut(s) 123, 291
PaeI GCATGC 1 cut(s) 291
PciI ACATGT 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 186
PscI ACATGT 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 108
Sau3AI GATC 2 cut(s) 21, 70
SetI ASST 2 cut(s) 102, 266
SfaNI GCATC 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 108
SphI GCATGC 1 cut(s) 291
Sse9I AATT 1 cut(s) 225
SsiI CCGC 3 cut(s) 34, 182, 269
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 225
TatI WGTACW 1 cut(s) 112
XapI RAATTY 1 cut(s) 225
XceI RCATGY 2 cut(s) 123, 291
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.