RLG00000009341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001322
Physical Location & Seq
Forward (+)
51330869 .. 51331892
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009341

Sequence Viewer

Length: 630 bp
ATGATTGATGATGGTGAGCTTTGCTTCGTTACTCTCGAGACTCAAAAAAGAAAAGCTTGTAAGCTTCTGACTCGAACACTGAGAGATAAACCAGTGAGAGAAGAAGAAGAAGAAGACAATGAAAGAAAATGCCCTCGTGGCTGGTGGAAGGGTTTCGATGATGGACGCCTGGCACACCCATCAAGAAACGTGTTATGGGGATTCGGTGCCCCTCTTGCCAAGTGCCTGCCATTTTCTCTCTTTCTCTTCTTCTCCTCCTCCATTCTGATTATGGATTGGTTGCTTAAGCTAAGGAGAGCTTTGCTTGCCTTCTCTGCCAGACTCAAGCATCGTAAATCTGTAGGTGGTGCTGGTGGTGATCAGTGTGGTGGAGTAGGTGGTCTGCTAAAGCTTCAAGATGATGTGCAAATGTGTGGGTACCAAGATGTACACATTATGTGGAACATGTTGAGCAAAGCTCAACAGGAGGAGATTCAGATCATGGCAAAAACTCAGTCACCTACCAAGCCGAATCAGAAGCAACGAAGACGACAACCATCATCATGTTCTTTCAGGACTTTCTTTGGACCAGCCACACAGAGCTGCGTCTTGGTTAGACTAGAATCCAATGCTTCTTCAACCTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.69

Weight (kDa)

9.4

Isoelectric Point (pI)

64.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 417
AccB1I GGYRCC 2 cut(s) 206, 417
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 2 cut(s) 419, 429
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 2 cut(s) 189, 444
AgsI TTSAA 2 cut(s) 395, 618
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 8 cut(s) 19, 56, 64, 289, 299, 391, 458, 582
AluI AGCT 8 cut(s) 19, 56, 64, 289, 299, 391, 458, 582
Alw26I GTCTC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 582
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
Asp700I GAANNNNTTC 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 3 cut(s) 26, 368, 489
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 211
BanI GGYRCC 2 cut(s) 206, 417
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 120, 532
BbvI GCAGC 1 cut(s) 569
BccI CCATC 4 cut(s) 5, 155, 187, 544
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 284
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 1 cut(s) 583
BlsI GCNGC 1 cut(s) 584
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 566
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 208, 419
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 2 cut(s) 120, 532
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu10I CCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 476
BseBI CCWGG 1 cut(s) 170
BseJI GATNNNNATC 1 cut(s) 476
BseMII CTCAG 2 cut(s) 71, 506
BseNI ACTGG 1 cut(s) 92
BseRI GAGGAG 3 cut(s) 244, 247, 482
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 1 cut(s) 569
BshNI GGYRCC 2 cut(s) 206, 417
BsiHKCI CYCGRG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 211
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 2 cut(s) 358, 477
BspCNI CTCAG 2 cut(s) 72, 505
BspLI GGNNCC 2 cut(s) 208, 419
BspT107I GGYRCC 2 cut(s) 206, 417
BspTI CTTAAG 1 cut(s) 284
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 92
BssMI GATC 2 cut(s) 358, 477
BssNI GRCGYC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 166
BstAFI CTTAAG 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 227, 306
BstDEI CTNAG 3 cut(s) 80, 290, 492
BstKTI GATC 2 cut(s) 361, 480
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 358, 477
BstMWI GCNNNNNNNGC 4 cut(s) 138, 215, 305, 314
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 2 cut(s) 120, 532
BtsIMutI CAGTG 3 cut(s) 77, 99, 368
Cac8I GCNNGC 2 cut(s) 227, 306
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 2 cut(s) 174, 574
Csp6I GTAC 2 cut(s) 418, 428
CviAII CATG 3 cut(s) 445, 481, 543
CviQI GTAC 2 cut(s) 418, 428
DdeI CTNAG 3 cut(s) 80, 290, 492
DpnI GATC 2 cut(s) 360, 479
DpnII GATC 2 cut(s) 358, 477
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 3 cut(s) 448, 484, 546
FaiI YATR 6 cut(s) 196, 272, 437, 446, 482, 544
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 283, 315
FatI CATG 3 cut(s) 444, 480, 542
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 583
Fsp4HI GCNGC 1 cut(s) 583
FspBI CTAG 1 cut(s) 599
GluI GCNGC 1 cut(s) 583
HgaI GACGC 2 cut(s) 174, 574
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 3 cut(s) 448, 484, 546
HindIII AAGCTT 3 cut(s) 54, 62, 389
HinfI GANTC 7 cut(s) 40, 70, 201, 321, 472, 511, 602
HphI GGTGA 3 cut(s) 26, 368, 489
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 4 cut(s) 69, 267, 477, 516
Hpy188III TCNNGA 5 cut(s) 35, 37, 183, 395, 553
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 2 cut(s) 142, 319
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 215, 305, 314
HpyF3I CTNAG 3 cut(s) 80, 290, 492
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 3 cut(s) 448, 484, 546
KpnI GGTACC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 358, 477
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 599
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 28, 495
MalI GATC 2 cut(s) 360, 479
MboI GATC 2 cut(s) 358, 477
MboII GAAGA 9 cut(s) 113, 116, 119, 122, 125, 238, 241, 537, 606
MhlI GDGCHC 1 cut(s) 211
MlyI GAGTC 3 cut(s) 34, 64, 315
MnlI CCTC 5 cut(s) 144, 222, 265, 268, 460
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 541
MspCI CTTAAG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 4 cut(s) 138, 215, 305, 314
NdeII GATC 2 cut(s) 358, 477
NlaIII CATG 3 cut(s) 448, 484, 546
NlaIV GGNNCC 2 cut(s) 208, 419
NmuCI GTSAC 1 cut(s) 495
NspI RCATGY 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 35
PciI ACATGT 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 4 cut(s) 201, 472, 511, 602
PkrI GCNGC 1 cut(s) 584
PleI GAGTC 3 cut(s) 34, 64, 315
PpsI GAGTC 3 cut(s) 34, 64, 315
PscI ACATGT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 208, 419
PspPI GGNCC 1 cut(s) 566
RsaI GTAC 2 cut(s) 419, 429
RsaNI GTAC 2 cut(s) 418, 428
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 583
Sau3AI GATC 2 cut(s) 358, 477
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 3 cut(s) 34, 64, 315
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 211
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 339
Sfr274I CTCGAG 1 cut(s) 35
SinI GGWCC 1 cut(s) 566
SlaI CTCGAG 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 4 cut(s) 35, 284, 323, 622
SmoI CTYRAG 4 cut(s) 35, 284, 323, 622
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 36, 73, 156
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 4 cut(s) 201, 472, 511, 602
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 3 cut(s) 84, 99, 368
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 1 cut(s) 582
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 3 cut(s) 84, 99, 368
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 566
XceI RCATGY 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.