Rorug02G0298900

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
33335404 .. 33336435
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0298900.1

Sequence Viewer

Length: 300 bp
ATGGCTTTGAAAGTGGCACTGTCTGGGACAAAATATGGCTTGAAGCAGACACGTGGAAAGTTTGGTCTAGGTGCAAAGATGGCATTAATTTGGTCGAAGATGAGTACAGGGCTTCCTATAGATATCTCTTCATCAATGAAGGGCCAAAGTTATAATTCTTTCTGCAGACTGGATATAGATATTCATCGGAACATTCCTCATGTTCATATACATGAAAAACGGGAAAACAAGGATAGGTGGCATGGTGCTGAAATCCAAGTTGTTATTGAGGGAAATTGGACAACTTACCGTGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.28

Weight (kDa)

9.94

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AcvI CACGTG 1 cut(s) 53
AfaI GTAC 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 10, 43
AoxI GGCC 1 cut(s) 142
AseI ATTAAT 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 142
BbrPI CACGTG 1 cut(s) 53
BccI CCATC 1 cut(s) 73
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 2 cut(s) 117, 163
BmgT120I GGNCC 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 183
BseNI ACTGG 1 cut(s) 174
BshFI GGCC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 144
BspANI GGCC 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 167
BsrI ACTGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 21, 290
Bst6I CTCTTC 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 2 cut(s) 117, 163
BsuRI GGCC 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 105
CviAII CATG 3 cut(s) 200, 212, 242
CviJI RGCY 4 cut(s) 5, 39, 112, 144
CviKI_1 RGCY 4 cut(s) 5, 39, 112, 144
CviQI GTAC 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco32I GATATC 1 cut(s) 124
Eco72I CACGTG 1 cut(s) 53
EcoRV GATATC 1 cut(s) 124
FaeI CATG 3 cut(s) 203, 215, 245
FaiI YATR 9 cut(s) 36, 119, 153, 176, 201, 207, 209, 213, 243
FaqI GGGAC 1 cut(s) 40
FatI CATG 3 cut(s) 199, 211, 241
FspBI CTAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 3 cut(s) 203, 215, 245
Hpy188I TCNGA 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 21, 290
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 74, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 3 cut(s) 203, 215, 245
LpnPI CCDG 3 cut(s) 9, 93, 155
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 52
MboII GAAGA 2 cut(s) 109, 120
MluCI AATT 3 cut(s) 87, 154, 274
MnlI CCTC 2 cut(s) 207, 262
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 80
NlaIII CATG 3 cut(s) 203, 215, 245
PmaCI CACGTG 1 cut(s) 53
PmlI CACGTG 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 86
PsiI TTATAA 1 cut(s) 153
PspCI CACGTG 1 cut(s) 53
PspPI GGNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 167
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 142
SetI ASST 3 cut(s) 55, 73, 239
SfcI CTRYAG 2 cut(s) 117, 163
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 3 cut(s) 87, 154, 274
SspMI CTAG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 21, 290
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 95
TasI AATT 3 cut(s) 87, 154, 274
TatI WGTACW 1 cut(s) 104
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 24
TspDTI ATGAA 5 cut(s) 120, 152, 173, 194, 228
TspRI CASTG 1 cut(s) 24
VspI ATTAAT 1 cut(s) 86
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.