pycom09g14960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001322
Physical Location & Seq
Reverse (-)
14795967 .. 14798933
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14960.1

Sequence Viewer

Length: 276 bp
ATGGAGTTTTGGGACAAGATGATCTTCCCTGTCCGCCGTCTCTGGCTTGCCGTCTCTACCCGCGTCAAGGATCGCAAAAATGGTGGTGGGCTTCTGAAGCTTCACGATGATGTGCAAACGTGTGGGTATCAAGATGTGCAAGTGATGTGGCAGATGCTGAGTAGAGAAACAACAGACAAGCATCCGCCCTCGGCCAAACGCAAACACCAAAGACCCTTCTGGAGAATTTTCGAGTGGTCTTCTAGCAATACTAGTAGTAAAAACTCAGCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.81

Weight (kDa)

10.09

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 3 cut(s) 34, 61, 185
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 119
AhlI ACTAGT 1 cut(s) 251
AluBI AGCT 2 cut(s) 100, 269
AluI AGCT 2 cut(s) 100, 269
Alw26I GTCTC 2 cut(s) 44, 58
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 231
BceAI ACGGC 2 cut(s) 21, 35
BcoDI GTCTC 2 cut(s) 44, 58
BcuI ACTAGT 1 cut(s) 251
BfaI CTAG 2 cut(s) 243, 252
BmsI GCATC 2 cut(s) 144, 190
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 194
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 44, 58
BsmBI CGTCTC 2 cut(s) 44, 58
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 21, 70
BspACI CCGC 3 cut(s) 34, 61, 185
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 1 cut(s) 63
BspPI GGATC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 2 cut(s) 21, 70
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 158, 265
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 24, 73
BstMAI GTCTC 2 cut(s) 44, 58
BstMBI GATC 2 cut(s) 21, 70
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstUI CGCG 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 157
CseI GACGC 1 cut(s) 52
CspCI CAANNNNNGTGG 4 cut(s) 64, 99, 128, 163
CviJI RGCY 5 cut(s) 46, 91, 100, 194, 269
CviKI_1 RGCY 5 cut(s) 46, 91, 100, 194, 269
DdeI CTNAG 2 cut(s) 158, 265
DpnI GATC 2 cut(s) 23, 72
DpnII GATC 2 cut(s) 21, 70
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 2 cut(s) 23, 174
Eco57I CTGAAG 1 cut(s) 116
Esp3I CGTCTC 2 cut(s) 44, 58
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 26
FauI CCCGC 1 cut(s) 68
FokI GGATG 1 cut(s) 168
FspBI CTAG 2 cut(s) 243, 252
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 1 cut(s) 194
HgaI GACGC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 3 cut(s) 104, 131, 220
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 115, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 158, 265
HpySE526I ACGT 1 cut(s) 119
Kzo9I GATC 2 cut(s) 21, 70
LpnPI CCDG 3 cut(s) 28, 42, 205
LweI GCATC 2 cut(s) 144, 190
MaeI CTAG 2 cut(s) 243, 252
MaeII ACGT 1 cut(s) 119
MalI GATC 2 cut(s) 23, 72
MboI GATC 2 cut(s) 21, 70
MboII GAAGA 2 cut(s) 16, 231
MluCI AATT 1 cut(s) 225
MnlI CCTC 1 cut(s) 199
MslI CAYNNNNRTG 1 cut(s) 108
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 2 cut(s) 21, 70
NmeAIII GCCGAG 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 108
Sau3AI GATC 2 cut(s) 21, 70
SetI ASST 3 cut(s) 102, 122, 271
SfaNI GCATC 2 cut(s) 144, 190
SmiMI CAYNNNNRTG 1 cut(s) 108
SpeI ACTAGT 1 cut(s) 251
Sse9I AATT 1 cut(s) 225
SsiI CCGC 3 cut(s) 34, 61, 185
SspMI CTAG 2 cut(s) 243, 252
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 225
XapI RAATTY 1 cut(s) 225
XspI CTAG 2 cut(s) 243, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.