Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001322

Physical Location & Seq

Genomic Coordinates Reverse (-)

18276026 .. 18279354

Gene Structure 3329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG087600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGAATCCGGCTATCCTCGTTTCAGAGGTGACTTTTCTATTTCAGGTGATGGATTGGTTGCTTAAGCTAAGGAGAGCTTTGCTTGCCTTCTCCGCCAGACTCAAGCATCGTAAATCTGTAGGTGGTGCTGGTGGTGATCAGTGTAGTGGAGTAGGTGGTCTGCTAAAGCTTAAAGATGATGTGCAAATGTGTGGGTACCAAGATGTACACATTATGTGGAACATGTTGAGCAAAGCTCAACAGGAGGAGATTCAGATCATGGCAAAAACTCGGTCACCTACCAAGCCGAATCAGAAGCAACGAAGACGACAACGATCATCATGTTCTTTCAGGACTTTCTTTGGACCAGCCACACAGAGCTGCGTCTTGGTTAGACTAGAATCCAATTCTTCTTCAATCTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.31

Weight (kDa)

10.04

Isoelectric Point (pI)

65.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43150
fragaria_vesca	FvH4_4g06680 FvH4_4g15440 FvH4_4g15440 FvH4_6g28000
malus_domestica	MD09G1230400.v1.1 MD13G1192200.v1.1 MD15G1072200.v1.1 MD15G1072300.v1.1 MD16G1192800.v1.1 MD17G1229300.v1.1
prunus_persica	Prupe.1G012900_v2.0.a1 Prupe.1G012900_v2.0.a1 Prupe.1G069600_v2.0.a1 Prupe.1G424900_v2.0.a1 Prupe.3G106900_v2.0.a1
pyrus_communis	pycom09g14960 pycom13g21000 pycom15g06760 pycom16g16270 pycom17g23170
rosa_chinensis	RchiOBHm_Chr2g0131671 RchiOBHm_Chr4g0416351 RchiOBHm_Chr6g0284921 RchiOBHm_Chr6g0309331
rosa_laevigata	RLG00000004932 RLG00000009341
rosa_multiflora	Rmu_co8318957.1_g000001 Rmu_co8501331.1_g000001 Rmu_sc0001260.1_g000004 Rmu_sc0005217.1_g000009 Rmu_sc0015692.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112710 Rroxscaffold_5G00343560 Rroxscaffold_5G00360200 Rroxscaffold_7G00159480
rosa_rugosa	Rorug02G0298900 Rorug04G0009700 Rorug06G0371100
rosa_samantha	Rh2AG351500 Rh2BG358400 Rh2CG337100 Rh2DG375800 Rh4AG087600 Rh4AG203300 Rh4BG084200 Rh4CG095800 Rh4CG214700 Rh4DG079100 Rh6BG493700 Rh6CG498600
rosa_wichuraiana	Rw2G028550 Rw4G017190 Rw6G042180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AciI	CCGC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	200, 210
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	399
AluBI	AGCT	5 cut(s)	70, 80, 172, 239, 363
AluI	AGCT	5 cut(s)	70, 80, 172, 239, 363
ApeKI	GCWGC	1 cut(s)	363
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp718I	GGTACC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	4 cut(s)	43, 61, 149, 270
AvaII	GGWCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	139
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	200
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	257
BseJI	GATNNNNATC	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	350
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	139, 258, 317
BspACI	CCGC	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	208
BssMI	GATC	3 cut(s)	139, 258, 317
BstAFI	CTTAAG	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	71
BstEII	GGTNACC	1 cut(s)	276
BstKTI	GATC	3 cut(s)	142, 261, 320
BstMBI	GATC	3 cut(s)	139, 258, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 95
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	313
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	199, 209
CviAII	CATG	3 cut(s)	226, 262, 324
CviJI	RGCY	8 cut(s)	14, 70, 80, 172, 239, 289, 353, 363
CviKI_1	RGCY	8 cut(s)	14, 70, 80, 172, 239, 289, 353, 363
CviQI	GTAC	2 cut(s)	199, 209
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	141, 260, 319
DpnII	GATC	3 cut(s)	139, 258, 317
EciI	GGCGGA	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	276
EcoO65I	GGTNACC	1 cut(s)	276
FaeI	CATG	3 cut(s)	229, 265, 327
FaiI	YATR	4 cut(s)	218, 227, 263, 325
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	3 cut(s)	225, 261, 323
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	1 cut(s)	364
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	229, 265, 327
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	5 cut(s)	7, 102, 253, 292, 383
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	4 cut(s)	43, 61, 149, 270
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	28, 258, 297
Hpy188III	TCNNGA	2 cut(s)	334, 403
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 95
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	229, 265, 327
KpnI	GGTACC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	139, 258, 317
LpnPI	CCDG	7 cut(s)	24, 32, 112, 117, 230, 319, 363
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	31, 276
MalI	GATC	3 cut(s)	141, 260, 319
MboI	GATC	3 cut(s)	139, 258, 317
MboII	GAAGA	3 cut(s)	318, 384, 387
MluCI	AATT	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	22, 29, 241
MseI	TTAA	2 cut(s)	66, 174
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	86, 95
NdeII	GATC	3 cut(s)	139, 258, 317
NlaIII	CATG	3 cut(s)	229, 265, 327
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	2 cut(s)	31, 276
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	4 cut(s)	7, 253, 292, 383
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PscI	ACATGT	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	347
RsaI	GTAC	2 cut(s)	200, 210
RsaNI	GTAC	2 cut(s)	199, 209
SaqAI	TTAA	2 cut(s)	66, 174
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	3 cut(s)	139, 258, 317
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	3 cut(s)	65, 104, 403
SmoI	CTYRAG	3 cut(s)	65, 104, 403
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	380
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	1 cut(s)	388
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	4 cut(s)	7, 253, 292, 383
Tru1I	TTAA	2 cut(s)	66, 174
Tru9I	TTAA	2 cut(s)	66, 174
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	2 cut(s)	31, 276
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	2 cut(s)	31, 276
TspRI	CASTG	1 cut(s)	149
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	347
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.