Rh4DG079100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001322
Physical Location & Seq
Reverse (-)
11717801 .. 11724115
6315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG079100.1

Sequence Viewer

Length: 675 bp
ATGAAGAGGAACCTCCGCGTCTCGAGCTCCCGCCGCAAGAGCAGCAAGGCTCACTTCACGGCGCCGTCGTCCGTCCATGCTGGTGCGCAAAAACGACGAAGTTTCGGGGTTGATGATCGGGCTGGACTTGATGCTCTTGGAGCGGAGATCGGAGACTTCGACGGAGGGGGCCTGGCGGGTCTTGCGGAGGGCGGAGGAATTGGATTTGAAGCTGAGGAAGGATTGAAGGAATCGACGGCGGCGAACGCGATTATGGTGCCCAAAACAGCGCCGTCTAAGGAGAGGGCGAACTGGGAGATTAGGGAGGCTAGGATTATGGATTGGTTGCTTAAGCTAAGGAGAGCTTTGCTTGCCTTCTCTGCCAGACTCAAGCATCGAAAATCTGTAGGTGGTGCTGGTGGTGATCTGTGTGGTGGAGTAGGTGGTCTGCTAAAGCTTCAAGATGATGTGCAAATGTGTGGGTACCAAGATGTACACATTATGTGGAACATGTTGAGCAAAGCTCAACAGGAGGAGATTCAGATCATGGCAAAAACTCAGTCACCTACCAAGCCGAATCAGAAGCAACGAAGACGACAACGATCATCATGTTCTTTCAGGACTTTCTTTGGACCAGCCACACAGAGCTGCGTCTTGGTTAGACTAGAATCCAATGCTTCTTCAATCTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.32

Weight (kDa)

10.02

Isoelectric Point (pI)

66.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 3 cut(s) 61, 256, 462
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 2 cut(s) 18, 248
AciI CCGC 8 cut(s) 16, 31, 34, 143, 176, 185, 192, 239
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 464, 474
AflII CTTAAG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 4 cut(s) 209, 226, 440, 663
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 7 cut(s) 27, 212, 334, 344, 436, 503, 627
AluI AGCT 7 cut(s) 27, 212, 334, 344, 436, 503, 627
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 25, 147
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 42, 627
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 3 cut(s) 64, 88, 271
AspS9I GGNCC 2 cut(s) 169, 611
AsuHPI GGTGA 2 cut(s) 413, 534
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 261
BanI GGYRCC 3 cut(s) 61, 256, 462
BanII GRGCYC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 54, 614
BceAI ACGGC 4 cut(s) 49, 75, 252, 256
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 2 cut(s) 25, 147
BfaI CTAG 2 cut(s) 309, 644
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 2 cut(s) 65, 272
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 4 cut(s) 34, 43, 240, 628
BlsI GCNGC 4 cut(s) 35, 44, 241, 629
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 611
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 169, 611
BmiI GGNNCC 5 cut(s) 11, 63, 170, 258, 464
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 2 cut(s) 121, 382
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 577
BplI GAGNNNNNCTC 2 cut(s) 487, 519
Bpu10I CCTNAGC 2 cut(s) 213, 335
BpuEI CTTGAG 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 296
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 1 cut(s) 173
BseJI GATNNNNATC 1 cut(s) 521
BseMII CTCAG 2 cut(s) 204, 551
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 2 cut(s) 54, 614
Bsh1236I CGCG 2 cut(s) 18, 248
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 3 cut(s) 61, 256, 462
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 25, 147
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 29, 261
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 5 cut(s) 115, 147, 403, 522, 581
BspACI CCGC 8 cut(s) 16, 31, 34, 143, 176, 185, 192, 239
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 205, 550
BspFNI CGCG 2 cut(s) 18, 248
BspLI GGNNCC 5 cut(s) 11, 63, 170, 258, 464
BspT107I GGYRCC 3 cut(s) 61, 256, 462
BspTI CTTAAG 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 1 cut(s) 296
BssMI GATC 5 cut(s) 115, 147, 403, 522, 581
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 213, 276, 335, 537
BstFNI CGCG 2 cut(s) 18, 248
BstH2I RGCGCY 2 cut(s) 65, 272
BstHHI GCGC 3 cut(s) 64, 88, 271
BstKTI GATC 5 cut(s) 118, 150, 406, 525, 584
BstMAI GTCTC 2 cut(s) 25, 147
BstMBI GATC 5 cut(s) 115, 147, 403, 522, 581
BstMWI GCNNNNNNNGC 9 cut(s) 24, 33, 39, 42, 140, 182, 245, 350, 359
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 2 cut(s) 18, 248
BstV1I GCAGC 2 cut(s) 54, 614
BstV2I GAAGAC 1 cut(s) 577
BsuRI GGCC 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 3 cut(s) 64, 88, 271
Cfr13I GGNCC 2 cut(s) 169, 611
CseI GACGC 2 cut(s) 7, 619
Csp6I GTAC 2 cut(s) 463, 473
CviAII CATG 4 cut(s) 77, 490, 526, 588
CviQI GTAC 2 cut(s) 463, 473
DdeI CTNAG 4 cut(s) 213, 276, 335, 537
DinI GGCGCC 1 cut(s) 63
DpnI GATC 5 cut(s) 117, 149, 405, 524, 583
DpnII GATC 5 cut(s) 115, 147, 403, 522, 581
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 611
Eco53kI GAGCTC 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 22
EcoICRI GAGCTC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 4 cut(s) 80, 493, 529, 591
FaiI YATR 7 cut(s) 78, 254, 317, 482, 491, 527, 589
FalI AAGNNNNNCTT 4 cut(s) 38, 70, 328, 360
FatI CATG 4 cut(s) 76, 489, 525, 587
FauI CCCGC 2 cut(s) 38, 169
Fnu4HI GCNGC 4 cut(s) 34, 43, 240, 628
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 34, 43, 240, 628
FspBI CTAG 2 cut(s) 309, 644
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 3 cut(s) 63, 87, 270
GluI GCNGC 4 cut(s) 34, 43, 240, 628
HaeII RGCGCY 2 cut(s) 65, 272
HaeIII GGCC 1 cut(s) 171
HgaI GACGC 2 cut(s) 7, 619
HhaI GCGC 3 cut(s) 64, 88, 271
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 80, 493, 529, 591
Hin6I GCGC 3 cut(s) 62, 86, 269
HinP1I GCGC 3 cut(s) 62, 86, 269
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 5 cut(s) 230, 366, 517, 556, 647
HphI GGTGA 2 cut(s) 413, 534
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 3 cut(s) 152, 522, 561
Hpy188III TCNNGA 4 cut(s) 22, 440, 598, 667
Hpy8I GTNNAC 1 cut(s) 475
Hpy99I CGWCG 4 cut(s) 70, 99, 164, 238
HpyAV CCTTC 3 cut(s) 212, 220, 364
HpyCH4V TGCA 1 cut(s) 451
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 33, 39, 42, 140, 182, 245, 350, 359
HpyF3I CTNAG 4 cut(s) 213, 276, 335, 537
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 80, 493, 529, 591
HspAI GCGC 3 cut(s) 62, 86, 269
KasI GGCGCC 1 cut(s) 61
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 5 cut(s) 115, 147, 403, 522, 581
LmnI GCTCC 2 cut(s) 32, 140
Lsp1109I GCAGC 2 cut(s) 54, 614
LweI GCATC 2 cut(s) 121, 382
MaeI CTAG 2 cut(s) 309, 644
MaeIII GTNAC 1 cut(s) 540
MalI GATC 5 cut(s) 117, 149, 405, 524, 583
MbiI CCGCTC 1 cut(s) 143
MboI GATC 5 cut(s) 115, 147, 403, 522, 581
MboII GAAGA 3 cut(s) 16, 582, 651
MhlI GDGCHC 2 cut(s) 29, 261
MluCI AATT 1 cut(s) 198
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 8 cut(s) 23, 158, 181, 188, 208, 276, 298, 505
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 2 cut(s) 18, 248
MwoI GCNNNNNNNGC 9 cut(s) 24, 33, 39, 42, 140, 182, 245, 350, 359
NarI GGCGCC 1 cut(s) 62
NdeII GATC 5 cut(s) 115, 147, 403, 522, 581
NlaIII CATG 4 cut(s) 80, 493, 529, 591
NlaIV GGNNCC 5 cut(s) 11, 63, 170, 258, 464
NmuCI GTSAC 1 cut(s) 540
NsbI TGCGCA 1 cut(s) 87
NspI RCATGY 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 22
PciI ACATGT 1 cut(s) 489
PcsI WCGNNNNNNNCGW 3 cut(s) 65, 156, 239
PfeI GAWTC 4 cut(s) 230, 517, 556, 647
PkrI GCNGC 4 cut(s) 35, 44, 241, 629
PleI GAGTC 1 cut(s) 360
PluTI GGCGCC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 360
PscI ACATGT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 5 cut(s) 11, 63, 170, 258, 464
PspPI GGNCC 2 cut(s) 169, 611
RsaI GTAC 2 cut(s) 464, 474
RsaNI GTAC 2 cut(s) 463, 473
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 4 cut(s) 34, 43, 240, 628
Sau3AI GATC 5 cut(s) 115, 147, 403, 522, 581
Sau96I GGNCC 2 cut(s) 169, 611
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 2 cut(s) 29, 261
SfaNI GCATC 2 cut(s) 121, 382
SfcI CTRYAG 1 cut(s) 384
SfoI GGCGCC 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 22
SinI GGWCC 1 cut(s) 611
SlaI CTCGAG 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 4 cut(s) 22, 329, 368, 667
SmoI CTYRAG 4 cut(s) 22, 329, 368, 667
Sse9I AATT 1 cut(s) 198
SsiI CCGC 8 cut(s) 16, 31, 34, 143, 176, 185, 192, 239
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 2 cut(s) 309, 644
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 171
TaqI TCGA 4 cut(s) 23, 159, 233, 376
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 472
TauI GCSGC 2 cut(s) 36, 242
TfiI GAWTC 4 cut(s) 230, 517, 556, 647
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 2 cut(s) 42, 627
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 61, 177
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 611
XceI RCATGY 1 cut(s) 493
XhoI CTCGAG 1 cut(s) 22
XspI CTAG 2 cut(s) 309, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.