Rorug06G0371100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001322
Physical Location & Seq
Reverse (-)
51792777 .. 51793799
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0371100.1

Sequence Viewer

Length: 1023 bp
ATGGGAAGTGAGCCTGCACGTCGGAGATGTCTCAAGTTGTACGTTGGTGAAATGGAGGAAATAGATGTTGGTGCTTGCAATGCTTTAGTTACAGGGCTTGCCCAAAATGGTCTTGTTGGCAATGCACTGGAGGTGTTCAGGCAATTTACGGGCAAAGGAGTGGAACTCAATATTGTGTCTTGGACCTCCATAATTGCTAGTTGTTCCCAAAATGGGAAGGATATGGAGGCTTTGGAGCTTTTTAGAGAGATGCAGATCGAGGGTGTGGAGCCAAACTCTATGACTATTTCTTGCTTGCTTCCGGCTTGTGGCAATATTGCAGCCTTGATGCATGGGAAGGCAGCCCATTGTTTCGCTCTCAGGAGGGGGATGCTTAGTGATGTGTATGTGGGCAGTGCATTGATTAATATGTATGCAAACTGCGGCAAAATCCAATTATCTCGACTTTGTTTTGATAAAATGCCCACTAGGAATTTGGTTTGCTGGAATGCAGTTATGAGCGGATATGCAATGCATGGAAAAGCTAAGGAGACTATGGAGATCTTTCGTATGATGCAGAGGAGTGGACAGAAGCCCGATATCATCAGCTTCACCTGTTTATTGTCTGCATGCAGCCAGAACGGTCTAACAGAAGATGGATGGTATTATTTTAACAGCATGTCAAAAGAACACAGTATAGAAGCCCGGATAGAACATTACGCTTGCATGGTCACACTACTTGGTCGTGCTGGAAAACTTGATGAGGCTTATTCCATGATCAAGAAAATGCCATTTGAACCTGATGCTTGTGTTTGGGGAGCTTTGCTAAGTTCTTGTAGAGTTCACAACAATGTGACTTTAGGGGAGTCTGCTGCAAAGAAGCTTCAATTTAGAACCGGAAAATCCTGGGAACTACATTCTGTTGTCCAATATTTATGCTTCGAAGGGCATTTGGCTGAAGTAGATAGAGTGAGAGATACGATGAAGAGAACCCTGGCTGCAGTTGGATCGAATTCAAGAACAAAGTTCACATGCTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

37.72

Weight (kDa)

8.28

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 45 - 105 5.4e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 57 - 104 8.2e-11 PPR repeat family
PPR PF01535 59 - 89 3.9e-07 PPR repeat
PPR_2 PF13041 158 - 205 1.6e-11 PPR repeat family
PPR_3 PF13812 158 - 206 6.5e-06 Pentatricopeptide repeat domain
PPR PF01535 160 - 189 1.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 501
AciI CCGC 2 cut(s) 423, 501
AclWI GGATC 1 cut(s) 994
AcsI RAATTY 2 cut(s) 472, 991
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 213, 308
AgsI TTSAA 3 cut(s) 776, 866, 996
AjiI CACGTC 1 cut(s) 20
AjnI CCWGG 2 cut(s) 884, 972
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 5 cut(s) 238, 524, 588, 800, 862
AluI AGCT 5 cut(s) 238, 524, 588, 800, 862
Alw26I GTCTC 2 cut(s) 35, 524
AlwI GGATC 1 cut(s) 994
ApeKI GCWGC 5 cut(s) 320, 341, 612, 851, 977
ApoI RAATTY 2 cut(s) 472, 991
AseI ATTAAT 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 685
AsuHPI GGTGA 2 cut(s) 59, 583
AsuII TTCGAA 1 cut(s) 921
AvaII GGWCC 1 cut(s) 183
BbvI GCAGC 5 cut(s) 332, 353, 624, 838, 964
BccI CCATC 2 cut(s) 629, 633
BcgI CGANNNNNNTGC 2 cut(s) 969, 1003
BciT130I CCWGG 2 cut(s) 886, 974
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 2 cut(s) 35, 524
BfaI CTAG 2 cut(s) 198, 468
BfmI CTRYAG 1 cut(s) 978
BglII AGATCT 1 cut(s) 540
BisI GCNGC 6 cut(s) 321, 342, 424, 613, 852, 978
BlsI GCNGC 6 cut(s) 322, 343, 425, 614, 853, 979
Bme1390I CCNGG 3 cut(s) 685, 886, 974
Bme18I GGWCC 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 3 cut(s) 685, 886, 974
BmsI GCATC 5 cut(s) 240, 318, 360, 543, 772
BplI GAGNNNNNCTC 4 cut(s) 150, 182, 260, 292
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 525
Bpu14I TTCGAA 1 cut(s) 921
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 885, 972
BsaWI WCCGGW 1 cut(s) 875
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 308
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 3 cut(s) 85, 127, 516
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 2 cut(s) 886, 974
BseDI CCNNGG 2 cut(s) 885, 972
BseGI GGATG 2 cut(s) 375, 644
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 213, 308
BseMI GCAATG 3 cut(s) 85, 127, 516
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 574
BseXI GCAGC 5 cut(s) 332, 353, 624, 838, 964
BsiSI CCGG 3 cut(s) 302, 685, 876
BslI CCNNNNNNNGG 2 cut(s) 213, 308
BsmAI GTCTC 2 cut(s) 35, 524
BsmI GAATGC 1 cut(s) 493
Bsp119I TTCGAA 1 cut(s) 921
Bsp143I GATC 4 cut(s) 255, 540, 756, 986
BspACI CCGC 2 cut(s) 423, 501
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 982
BspPI GGATC 1 cut(s) 994
BspT104I TTCGAA 1 cut(s) 921
BsrBI CCGCTC 1 cut(s) 501
BsrDI GCAATG 3 cut(s) 85, 127, 516
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 2 cut(s) 885, 972
BssMI GATC 4 cut(s) 255, 540, 756, 986
Bst2UI CCWGG 2 cut(s) 886, 974
Bst4CI ACNGT 2 cut(s) 623, 674
Bst6I CTCTTC 1 cut(s) 959
BstBI TTCGAA 1 cut(s) 921
BstC8I GCNNGC 6 cut(s) 15, 76, 99, 296, 610, 703
BstDEI CTNAG 4 cut(s) 359, 374, 525, 806
BstF5I GGATG 2 cut(s) 375, 644
BstKTI GATC 4 cut(s) 258, 543, 759, 989
BstMAI GTCTC 2 cut(s) 35, 524
BstMBI GATC 4 cut(s) 255, 540, 756, 986
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 886, 974
BstNSI RCATGY 3 cut(s) 612, 661, 1014
BstSCI CCNGG 3 cut(s) 683, 884, 972
BstSFI CTRYAG 1 cut(s) 978
BstV1I GCAGC 5 cut(s) 332, 353, 624, 838, 964
BstX2I RGATCY 1 cut(s) 540
BstYI RGATCY 1 cut(s) 540
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 375, 644
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 125, 400
Cac8I GCNNGC 6 cut(s) 15, 76, 99, 296, 610, 703
Cfr13I GGNCC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 40
CviAII CATG 7 cut(s) 332, 515, 609, 658, 706, 754, 1011
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 4 cut(s) 359, 374, 525, 806
DpnI GATC 4 cut(s) 257, 542, 758, 988
DpnII GATC 4 cut(s) 255, 540, 756, 986
Eam1104I CTCTTC 1 cut(s) 959
EarI CTCTTC 1 cut(s) 959
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 957
EcoRI GAATTC 1 cut(s) 991
EcoRII CCWGG 2 cut(s) 884, 972
EcoRV GATATC 1 cut(s) 580
EcoT22I ATGCAT 2 cut(s) 333, 516
FaeI CATG 7 cut(s) 335, 518, 612, 661, 709, 757, 1014
FatI CATG 7 cut(s) 331, 514, 608, 657, 705, 753, 1010
FbaI TGATCA 1 cut(s) 756
Fnu4HI GCNGC 6 cut(s) 321, 342, 424, 613, 852, 978
FokI GGATG 2 cut(s) 382, 651
Fsp4HI GCNGC 6 cut(s) 321, 342, 424, 613, 852, 978
FspBI CTAG 2 cut(s) 198, 468
GluI GCNGC 6 cut(s) 321, 342, 424, 613, 852, 978
GsuI CTGGAG 1 cut(s) 149
HapII CCGG 3 cut(s) 302, 685, 876
Hin1II CATG 7 cut(s) 335, 518, 612, 661, 709, 757, 1014
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 1 cut(s) 845
HpaII CCGG 3 cut(s) 302, 685, 876
HphI GGTGA 2 cut(s) 59, 583
Hpy166II GTNNAC 3 cut(s) 566, 823, 1008
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 4 cut(s) 361, 441, 760, 996
Hpy8I GTNNAC 3 cut(s) 566, 823, 1008
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 211, 331, 917
HpyCH4III ACNGT 2 cut(s) 623, 674
HpyCH4IV ACGT 2 cut(s) 19, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 4 cut(s) 359, 374, 525, 806
HpySE526I ACGT 2 cut(s) 19, 42
Hsp92II CATG 7 cut(s) 335, 518, 612, 661, 709, 757, 1014
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 4 cut(s) 255, 540, 756, 986
LmnI GCTCC 3 cut(s) 235, 268, 797
Lsp1109I GCAGC 5 cut(s) 332, 353, 624, 838, 964
LweI GCATC 5 cut(s) 240, 318, 360, 543, 772
MaeI CTAG 2 cut(s) 198, 468
MaeII ACGT 2 cut(s) 19, 42
MaeIII GTNAC 3 cut(s) 88, 709, 832
MalI GATC 4 cut(s) 257, 542, 758, 988
MbiI CCGCTC 1 cut(s) 501
MboI GATC 4 cut(s) 255, 540, 756, 986
MboII GAAGA 2 cut(s) 644, 976
MflI RGATCY 1 cut(s) 540
MluCI AATT 6 cut(s) 143, 192, 434, 472, 866, 991
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 964
MnlI CCTC 8 cut(s) 49, 124, 196, 220, 253, 357, 552, 736
Mph1103I ATGCAT 2 cut(s) 333, 516
MseI TTAA 2 cut(s) 405, 651
MslI CAYNNNNRTG 1 cut(s) 828
MspI CCGG 3 cut(s) 302, 685, 876
MspR9I CCNGG 3 cut(s) 685, 886, 974
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 2 cut(s) 886, 974
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 685
NdeII GATC 4 cut(s) 255, 540, 756, 986
NlaIII CATG 7 cut(s) 335, 518, 612, 661, 709, 757, 1014
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 709, 832
NsiI ATGCAT 2 cut(s) 333, 516
NspI RCATGY 3 cut(s) 612, 661, 1014
NspV TTCGAA 1 cut(s) 921
PaeI GCATGC 1 cut(s) 612
PctI GAATGC 1 cut(s) 493
PkrI GCNGC 6 cut(s) 322, 343, 425, 614, 853, 979
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PshBI ATTAAT 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 884, 972
PspGI CCWGG 2 cut(s) 884, 972
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 982
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 2 cut(s) 405, 651
SatI GCNGC 6 cut(s) 321, 342, 424, 613, 852, 978
Sau3AI GATC 4 cut(s) 255, 540, 756, 986
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 3 cut(s) 685, 886, 974
SfaNI GCATC 5 cut(s) 240, 318, 360, 543, 772
SfcI CTRYAG 1 cut(s) 978
SfuI TTCGAA 1 cut(s) 921
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 828
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SphI GCATGC 1 cut(s) 612
Sse9I AATT 6 cut(s) 143, 192, 434, 472, 866, 991
SsiI CCGC 2 cut(s) 423, 501
SspI AATATT 3 cut(s) 172, 316, 911
SspMI CTAG 2 cut(s) 198, 468
StyD4I CCNGG 3 cut(s) 683, 884, 972
TaaI ACNGT 2 cut(s) 623, 674
TaiI ACGT 2 cut(s) 22, 45
TaqI TCGA 4 cut(s) 258, 442, 921, 989
TasI AATT 6 cut(s) 143, 192, 434, 472, 866, 991
TauI GCSGC 1 cut(s) 426
Tru1I TTAA 2 cut(s) 405, 651
Tru9I TTAA 2 cut(s) 405, 651
TscAI CASTG 2 cut(s) 132, 400
TseFI GTSAC 2 cut(s) 709, 832
TseI GCWGC 5 cut(s) 320, 341, 612, 851, 977
Tsp45I GTSAC 2 cut(s) 709, 832
TspDTI ATGAA 1 cut(s) 977
TspRI CASTG 2 cut(s) 132, 400
VpaK11BI GGWCC 1 cut(s) 183
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 2 cut(s) 472, 991
XceI RCATGY 3 cut(s) 612, 661, 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 2 cut(s) 198, 468
Zsp2I ATGCAT 2 cut(s) 333, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.