Prupe.3G106900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001322
Physical Location & Seq
Reverse (-)
8487899 .. 8491228
3330 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G106900.1

Sequence Viewer

Length: 414 bp
ATGTGTGAAAGAGAGAAGGGTGCAGGTCTGGCAGGGCAAAGGAGCATAGCGATTAGAGTGAGTAGTGGAGGTGGGGGGTATAACAAGAAAAAAATCAAAGGCAGAAAGAAGGTGAAAGTTATCAAAGAAAGGTTGATGGATTTTTGGCACAAGATGATCTTCCCTGTCCGCCGCGTCTGGCTCACTGTCTCTGCTCGCATTAAAGCTCGCAAAAATGGTGCTGGACTTTTGAAGCTTCATGACGATGTACAAACCTGTGGATATCAAGATGTGCAGGTGATGTGGCAGATGCTGAGCAGAGACACTGAGCTGACAAGTCACCATTCCAAACGCAAACAAAGACCCTTCTGGAGAGTTTTTGAATTTTCTAGCAACAATAGTAAACCCTCACCACTCTCTTCAAATCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.75

Weight (kDa)

10.76

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 2 cut(s) 14, 265
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 169, 172
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 1 cut(s) 249
AgsI TTSAA 3 cut(s) 232, 362, 402
AluBI AGCT 3 cut(s) 206, 235, 310
AluI AGCT 3 cut(s) 206, 235, 310
Alw26I GTCTC 2 cut(s) 193, 294
AlwNI CAGNNNCTG 1 cut(s) 292
ApoI RAATTY 1 cut(s) 362
AsuHPI GGTGA 4 cut(s) 124, 289, 311, 381
BccI CCATC 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 193, 294
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 2 cut(s) 14, 265
BisI GCNGC 1 cut(s) 172
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 173
BmsI GCATC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 370
Bpu1102I GCTNAGC 1 cut(s) 293
BseMII CTCAG 2 cut(s) 284, 297
BsgI GTGCAG 2 cut(s) 42, 293
Bsh1236I CGCG 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 193, 294
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 1 cut(s) 156
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 2 cut(s) 169, 172
BspCNI CTCAG 2 cut(s) 285, 298
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 238
BspMI ACCTGC 2 cut(s) 14, 265
BsrGI TGTACA 1 cut(s) 247
BssMI GATC 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 403
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 2 cut(s) 196, 208
BstDEI CTNAG 2 cut(s) 293, 306
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 2 cut(s) 193, 294
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstUI CGCG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 183, 303
BveI ACCTGC 2 cut(s) 14, 265
Cac8I GCNNGC 2 cut(s) 196, 208
CaiI CAGNNNCTG 1 cut(s) 292
CciI TCATGA 1 cut(s) 238
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 248
CviAII CATG 3 cut(s) 239, 407, 411
CviJI RGCY 4 cut(s) 181, 206, 235, 310
CviKI_1 RGCY 4 cut(s) 181, 206, 235, 310
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 2 cut(s) 293, 306
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
EciI GGCGGA 1 cut(s) 158
Eco32I GATATC 1 cut(s) 263
EcoRV GATATC 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 3 cut(s) 242, 410, 414
FaiI YATR 5 cut(s) 47, 81, 240, 408, 412
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 3 cut(s) 238, 406, 410
Fnu4HI GCNGC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 369
GluI GCNGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 370
HgaI GACGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 242, 410, 414
HindIII AAGCTT 1 cut(s) 233
HphI GGTGA 4 cut(s) 124, 289, 311, 381
Hpy166II GTNNAC 1 cut(s) 383
Hpy188III TCNNGA 3 cut(s) 239, 266, 349
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 10, 103, 355
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 23, 274, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 293, 306
Hsp92II CATG 3 cut(s) 242, 410, 414
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 9 cut(s) 9, 14, 18, 163, 177, 207, 260, 268, 334
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 151, 390
MluCI AATT 1 cut(s) 362
MnlI CCTC 2 cut(s) 62, 397
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 243
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 156
NlaIII CATG 3 cut(s) 242, 410, 414
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 412
PagI TCATGA 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 1 cut(s) 156
SetI ASST 9 cut(s) 28, 73, 114, 134, 208, 237, 257, 279, 312
SfaNI GCATC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 1 cut(s) 362
SsiI CCGC 2 cut(s) 169, 172
SspMI CTAG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 187
TasI AATT 1 cut(s) 362
TatI WGTACW 1 cut(s) 247
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 190, 310
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 2 cut(s) 190, 310
XapI RAATTY 1 cut(s) 362
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.