Rw6G042180

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
65712195 .. 65713132
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042180.1

Sequence Viewer

Length: 279 bp
ATGGCGTTGTGGCGTAAGATGAAGTTTCCGATGCGGAGAACTTTTAACCGGGTCGCCACCCGCGTCGGACTCCGAAAAACCGGGCTACCGAAGCTGCGACACGATGTGAAGGCTTGCGAGTATGAGGACGTGCGTGTGATGTGGAACATACTCATCAACAAAAATGAGCCAGAGACTATTCGATTGGGAGGAAGCTCAAGGAAGAAGAAGAAGAAGATGCCTTCTTGCAATTTCTTGGATTGGGTTAAACGCACACCACTTATGTGCCGTGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.97

Weight (kDa)

10.82

Isoelectric Point (pI)

76.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 2 cut(s) 34, 61
AdeI CACNNNGTG 1 cut(s) 106
AjiI CACGTC 1 cut(s) 130
AleI CACNNNNGTG 1 cut(s) 262
AluBI AGCT 2 cut(s) 94, 195
AluI AGCT 2 cut(s) 94, 195
Alw26I GTCTC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 94
AsuC2I CCSGG 2 cut(s) 50, 82
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 252
BcnI CCSGG 2 cut(s) 50, 82
BcoDI GTCTC 1 cut(s) 167
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 50, 82
BmgBI CACGTC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 50, 82
BmsI GCATC 2 cut(s) 21, 207
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 50, 82
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 49, 81
BsmAI GTCTC 1 cut(s) 167
BspACI CCGC 2 cut(s) 34, 61
BspFNI CGCG 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 115
BstFNI CGCG 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 48, 80
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 115
CseI GACGC 1 cut(s) 52
CviJI RGCY 5 cut(s) 85, 94, 113, 169, 195
CviKI_1 RGCY 5 cut(s) 85, 94, 113, 169, 195
DraIII CACNNNGTG 1 cut(s) 106
FaiI YATR 3 cut(s) 123, 149, 263
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HapII CCGG 2 cut(s) 49, 81
HgaI GACGC 1 cut(s) 52
HinfI GANTC 1 cut(s) 69
HpaII CCGG 2 cut(s) 49, 81
Hpy188I TCNGA 3 cut(s) 30, 68, 74
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 2 cut(s) 103, 231
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 129
LpnPI CCDG 3 cut(s) 62, 94, 183
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 21, 207
MaeII ACGT 1 cut(s) 129
MboII GAAGA 5 cut(s) 214, 217, 220, 223, 226
MluCI AATT 1 cut(s) 229
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 2 cut(s) 118, 182
MseI TTAA 2 cut(s) 45, 246
MslI CAYNNNNRTG 1 cut(s) 262
MspI CCGG 2 cut(s) 49, 81
MspR9I CCNGG 2 cut(s) 50, 82
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 50, 82
OliI CACNNNNGTG 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 2 cut(s) 45, 246
SatI GCNGC 1 cut(s) 95
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 50, 82
SetI ASST 3 cut(s) 96, 132, 197
SfaNI GCATC 2 cut(s) 21, 207
SmiMI CAYNNNNRTG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 1 cut(s) 229
SsiI CCGC 2 cut(s) 34, 61
StyD4I CCNGG 2 cut(s) 48, 80
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 181
TasI AATT 1 cut(s) 229
Tru1I TTAA 2 cut(s) 45, 246
Tru9I TTAA 2 cut(s) 45, 246
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.