FvH4_4g07120

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001016
Physical Location & Seq
Reverse (-)
6522220 .. 6523750
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07120.t1

Sequence Viewer

Length: 807 bp
ATGGTAGCACCACTCCTGGGTCATCTCCGTCTCTCAGAGACTGGATTGCTAACAACCCTAATGACATGCTTGGTCACAAGGTGCTATCCGTGGCCAAGGCATTGTCAATACTCAATACAGGCACACCCAGATAAGGAATTGGCCAAGGCTTTGCACAAGCTCTGTGGTTTTATCACTCTTGAGGAGCTTAAGAAGGTGATTGGTAATGTCCCTGAGATTGTAGAAATGGTTGGTAGTGAGGTCGCAAACCAAGTGCTTTGCATAACCAAAGAAGATGGGGAGGACAAGGTGAGGCAGTTGACAGAAAAAGAGCAGCTAGTTTTGCAATTAGAAAAGCAATATCCAAACGATGTCGGTGTGATATCTGCATTCGTTCTTAACTATGTGAAGCTTAATCCTGGAGAAGCATTATGCCTTGGAGCAAATGAACCCATGCTTATATATCTGGAGACTCAAGGTTTACCTGAAATCCTGCCAGGGGTTTCTGTGAATCCTCGTGTAACAAGGTACATACCGCCTTTTGAAGAATTTGAGGTTGATCGGTTCCATCTTCCCCATGGAGAATCCACAGAGTTTCCTGCAGTACCTGGTCCTTCCATTTTTGTGGTCACTCTTGGGAAGGGAACCATATCTACAAGTAACGGAGATCATGCAATCATCCAAGGGGATGTTCTGTTTGCACCTGCGCACACTGAGATTAGCATAACAATATATGTGATATGTCAATGGCTCAATGCCATGCCAGAGTATTGCATACCCCATGGTTCTATACCTGTAAGCAATCTTACTATTGCTGAAGCAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

269

Amino Acids

29.57

Weight (kDa)

5.09

Isoelectric Point (pI)

29.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc16I TGCGCA 1 cut(s) 687
Acc36I ACCTGC 1 cut(s) 691
AciI CCGC 1 cut(s) 515
AcoI YGGCCR 2 cut(s) 92, 141
AcsI RAATTY 1 cut(s) 527
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 2 cut(s) 509, 585
AfiI CCNNNNNNNGG 3 cut(s) 17, 133, 478
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 524
AjnI CCWGG 4 cut(s) 15, 397, 475, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 4 cut(s) 160, 187, 316, 391
AluI AGCT 4 cut(s) 160, 187, 316, 391
Alw26I GTCTC 3 cut(s) 32, 35, 443
AlwNI CAGNNNCTG 2 cut(s) 41, 587
AoxI GGCC 2 cut(s) 92, 141
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 527
AspLEI GCGC 1 cut(s) 688
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 2 cut(s) 208, 301
AvaII GGWCC 1 cut(s) 590
BalI TGGCCA 2 cut(s) 94, 143
BauI CACGAG 1 cut(s) 495
BbvI GCAGC 1 cut(s) 325
BccI CCATC 2 cut(s) 269, 555
BciT130I CCWGG 4 cut(s) 17, 399, 477, 588
BcoDI GTCTC 3 cut(s) 32, 35, 443
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 579
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 691
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 4 cut(s) 17, 399, 477, 588
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 545, 625
BmrFI CCNGG 4 cut(s) 17, 399, 477, 588
BpmI CTGGAG 2 cut(s) 420, 467
BpuEI CTTGAG 2 cut(s) 200, 438
BsaJI CCNNGG 9 cut(s) 16, 89, 95, 144, 415, 476, 556, 661, 760
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 133, 478
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 4 cut(s) 17, 399, 477, 588
BseDI CCNNGG 9 cut(s) 16, 89, 95, 144, 415, 476, 556, 661, 760
BseGI GGATG 2 cut(s) 657, 673
BseLI CCNNNNNNNGG 3 cut(s) 17, 133, 478
BseMII CTCAG 3 cut(s) 48, 204, 684
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 2 cut(s) 94, 143
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 17, 133, 478
BsmAI GTCTC 3 cut(s) 32, 35, 443
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 2 cut(s) 94, 143
Bsp143I GATC 2 cut(s) 538, 646
Bsp19I CCATGG 2 cut(s) 556, 760
BspACI CCGC 1 cut(s) 515
BspANI GGCC 2 cut(s) 94, 143
BspCNI CTCAG 3 cut(s) 47, 205, 685
BspLI GGNNCC 2 cut(s) 545, 625
BspMAI CTGCAG 1 cut(s) 583
BspMI ACCTGC 1 cut(s) 691
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 9 cut(s) 16, 89, 95, 144, 415, 476, 556, 661, 760
BssMI GATC 2 cut(s) 538, 646
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 6 cut(s) 95, 144, 415, 556, 661, 760
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 4 cut(s) 17, 399, 477, 588
BstAFI CTTAAG 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 34, 213, 693
BstDSI CCRYGG 3 cut(s) 89, 556, 760
BstF5I GGATG 2 cut(s) 657, 673
BstHHI GCGC 1 cut(s) 688
BstKTI GATC 2 cut(s) 541, 649
BstMAI GTCTC 3 cut(s) 32, 35, 443
BstMBI GATC 2 cut(s) 538, 646
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 4 cut(s) 17, 399, 477, 588
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 4 cut(s) 15, 397, 475, 586
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuRI GGCC 2 cut(s) 94, 143
BtgI CCRYGG 3 cut(s) 89, 556, 760
BtsCI GGATG 2 cut(s) 657, 673
BtsIMutI CAGTG 1 cut(s) 690
BveI ACCTGC 1 cut(s) 691
CaiI CAGNNNCTG 2 cut(s) 41, 587
CfoI GCGC 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 590
CsiI ACCWGGT 1 cut(s) 586
Csp6I GTAC 2 cut(s) 508, 584
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 6 cut(s) 66, 433, 557, 650, 739, 761
CviJI RGCY 8 cut(s) 94, 143, 149, 160, 187, 316, 391, 730
CviKI_1 RGCY 8 cut(s) 94, 143, 149, 160, 187, 316, 391, 730
CviQI GTAC 2 cut(s) 508, 584
DdeI CTNAG 3 cut(s) 34, 213, 693
DpnI GATC 2 cut(s) 540, 648
DpnII GATC 2 cut(s) 538, 646
DraIII CACNNNGTG 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 92, 141
Eco130I CCWWGG 6 cut(s) 95, 144, 415, 556, 661, 760
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 590
EcoRII CCWGG 4 cut(s) 15, 397, 475, 586
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 6 cut(s) 95, 144, 415, 556, 661, 760
ErhI CCWWGG 6 cut(s) 95, 144, 415, 556, 661, 760
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 6 cut(s) 69, 436, 560, 653, 742, 764
FaqI GGGAC 1 cut(s) 194
FatI CATG 6 cut(s) 65, 432, 556, 649, 738, 760
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 2 cut(s) 644, 680
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 1 cut(s) 317
FspI TGCGCA 1 cut(s) 687
GlaI GCGC 1 cut(s) 687
GluI GCNGC 1 cut(s) 314
GsuI CTGGAG 2 cut(s) 420, 467
HaeIII GGCC 2 cut(s) 94, 143
HhaI GCGC 1 cut(s) 688
Hin1II CATG 6 cut(s) 69, 436, 560, 653, 742, 764
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 451, 490, 563
HphI GGTGA 2 cut(s) 208, 301
Hpy166II GTNNAC 2 cut(s) 300, 461
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 2 cut(s) 179, 446
Hpy8I GTNNAC 2 cut(s) 300, 461
HpyAV CCTTC 3 cut(s) 187, 603, 613
HpyCH4IV ACGT 1 cut(s) 803
HpyCH4V TGCA 8 cut(s) 154, 261, 325, 368, 581, 653, 680, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 3 cut(s) 34, 213, 693
HpySE526I ACGT 1 cut(s) 803
Hsp92II CATG 6 cut(s) 69, 436, 560, 653, 742, 764
HspAI GCGC 1 cut(s) 686
Kzo9I GATC 2 cut(s) 538, 646
LmnI GCTCC 2 cut(s) 184, 419
Lsp1109I GCAGC 1 cut(s) 325
MabI ACCWGGT 1 cut(s) 586
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 803
MaeIII GTNAC 4 cut(s) 73, 499, 607, 638
MalI GATC 2 cut(s) 540, 648
MboI GATC 2 cut(s) 538, 646
MboII GAAGA 3 cut(s) 284, 536, 542
MlsI TGGCCA 2 cut(s) 94, 143
MluCI AATT 3 cut(s) 137, 326, 527
MluNI TGGCCA 2 cut(s) 94, 143
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 6 cut(s) 175, 232, 274, 285, 504, 526
Mox20I TGGCCA 2 cut(s) 94, 143
MscI TGGCCA 2 cut(s) 94, 143
MseI TTAA 3 cut(s) 189, 378, 393
MslI CAYNNNNRTG 1 cut(s) 602
Msp20I TGGCCA 2 cut(s) 94, 143
MspCI CTTAAG 1 cut(s) 188
MspR9I CCNGG 4 cut(s) 17, 399, 477, 588
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 4 cut(s) 17, 399, 477, 588
MwoI GCNNNNNNNGC 1 cut(s) 322
NcoI CCATGG 2 cut(s) 556, 760
NdeII GATC 2 cut(s) 538, 646
NlaIII CATG 6 cut(s) 69, 436, 560, 653, 742, 764
NlaIV GGNNCC 2 cut(s) 545, 625
NmuCI GTSAC 2 cut(s) 73, 607
NsbI TGCGCA 1 cut(s) 687
NspI RCATGY 1 cut(s) 69
PaqCI CACCTGC 1 cut(s) 691
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 490, 563
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp6I CCWGG 4 cut(s) 15, 397, 475, 586
PspGI CCWGG 4 cut(s) 15, 397, 475, 586
PspN4I GGNNCC 2 cut(s) 545, 625
PspPI GGNCC 1 cut(s) 590
PsrI GAACNNNNNNTAC 2 cut(s) 616, 648
PstI CTGCAG 1 cut(s) 583
PstNI CAGNNNCTG 2 cut(s) 41, 587
RsaI GTAC 2 cut(s) 509, 585
RsaNI GTAC 2 cut(s) 508, 584
RseI CAYNNNNRTG 1 cut(s) 602
SaqAI TTAA 3 cut(s) 189, 378, 393
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 2 cut(s) 538, 646
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 4 cut(s) 17, 399, 477, 588
SexAI ACCWGGT 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 590
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 3 cut(s) 179, 188, 453
SmoI CTYRAG 3 cut(s) 179, 188, 453
Sse9I AATT 3 cut(s) 137, 326, 527
SsiI CCGC 1 cut(s) 515
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 4 cut(s) 15, 397, 475, 586
StyI CCWWGG 6 cut(s) 95, 144, 415, 556, 661, 760
TaiI ACGT 1 cut(s) 806
TasI AATT 3 cut(s) 137, 326, 527
TfiI GAWTC 2 cut(s) 490, 563
Tru1I TTAA 3 cut(s) 189, 378, 393
Tru9I TTAA 3 cut(s) 189, 378, 393
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 2 cut(s) 73, 607
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 2 cut(s) 73, 607
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 3 cut(s) 17, 78, 657
TspRI CASTG 1 cut(s) 697
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 527
XceI RCATGY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.