Rh6DG466600

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001016
Physical Location & Seq
Forward (+)
63389508 .. 63390560
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG466600.1

Sequence Viewer

Length: 861 bp
ATGGCGCTTGCTACAACACATTTTCAAGCTCTTTGTGGTTTCATTGCTTTCCAGGAGCTTAAGGATGTGCTCAACAATGTACCCGAGATTGTGCAAGTGGTTGGAAGTGAAGTTGCAAACCAAGTGCTTCAGACCGATGACGAAGATGGGGTGGGGAGCGGAGAAAAAGTCAAGTCTGTTCTGCGTTCAATTTTCAGCCAGTTAATGTCAGCTGACAAACAGATGATAACTGCAGCAACATCTAAACTGAAAAATCGTCTACAAACAGAAAGCCAGGTGAGGCAGTTGACATACAAGGAGCAGCTGGTGTTGCAATTGGAAGAGCAATATTCAGAAGAGGACGTGGGTGTGATATCTGCTTTCTTTCTCAACCATGTGAAGCTTAATCCTGGAGAAGCATTGTGCCTCGGAGCAAATGAACCTCATGCCTATGTATCCGGGGACTGCATTGAGTGCATGGCGACCTCGGACAACGTAGTCAGGGCTGGCCTTACTCCTAAGCATCGAGATGTTAAGACCCTTTGTTCTATGCTCACATATAAGCAGGGTTTCCCTGAAATCATGCGAGGAGTTGCCATGAATCCTTATGTGACTAGGTACATCCCGCCTTTCGATGAATTTGAGGTGGATCGGTGTCATCTTCCGGGTGGGGAATCGACGGAGTTTCCTGCAGTAGCTGGTCCTTCAATTTTTGTGGTCACTCTTGGAAAGGGAACAATATGCACTTGTAATGGAGATAATGAAATTATCCAAGGAGATGTTCTGTTTGCATGTGCAGATACTCGGATTAGCGTAACGAGTGCATCTCAGTTGCATGTATATAGAGCCGGAGTGAACAGCATGGTCTTTGGGGCGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

286

Amino Acids

31.14

Weight (kDa)

4.94

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_hel PF20512 41 - 123 6e-11 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccBSI CCGCTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 259
AciI CCGC 2 cut(s) 159, 605
AclWI GGATC 1 cut(s) 636
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 854
AfaI GTAC 2 cut(s) 81, 599
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 3 cut(s) 26, 189, 687
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 3 cut(s) 51, 273, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 744, 776
AluBI AGCT 6 cut(s) 29, 58, 212, 304, 382, 677
AluI AGCT 6 cut(s) 29, 58, 212, 304, 382, 677
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 1 cut(s) 636
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 2 cut(s) 233, 301
ApoI RAATTY 1 cut(s) 617
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 680
AsuC2I CCSGG 2 cut(s) 439, 645
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 245, 313
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 3 cut(s) 53, 275, 390
BciVI GTATCC 1 cut(s) 445
BcnI CCSGG 2 cut(s) 439, 645
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 2 cut(s) 231, 669
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 59
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 2 cut(s) 234, 302
BlsI GCNGC 2 cut(s) 235, 303
Bme1390I CCNGG 5 cut(s) 53, 275, 390, 439, 645
Bme18I GGWCC 1 cut(s) 680
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 680
BmrFI CCNGG 5 cut(s) 53, 275, 390, 439, 645
BmsI GCATC 2 cut(s) 511, 812
BplI GAGNNNNNCTC 2 cut(s) 790, 822
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 2 cut(s) 439, 645
BsaHI GRCGYC 1 cut(s) 854
BsaJI CCNNGG 4 cut(s) 406, 438, 465, 751
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 3 cut(s) 53, 275, 390
BseDI CCNNGG 4 cut(s) 406, 438, 465, 751
BseGI GGATG 2 cut(s) 70, 600
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 2 cut(s) 245, 313
BsgI GTGCAG 1 cut(s) 795
BshFI GGCC 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 3 cut(s) 438, 644, 828
BslFI GGGAC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 628
BspACI CCGC 2 cut(s) 159, 605
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 820
BspMAI CTGCAG 2 cut(s) 235, 673
BspPI GGATC 1 cut(s) 636
BspQI GCTCTTC 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 4 cut(s) 406, 438, 465, 751
BssMI GATC 1 cut(s) 628
BssNI GRCGYC 1 cut(s) 854
BssT1I CCWWGG 1 cut(s) 751
Bst2UI CCWGG 3 cut(s) 53, 275, 390
Bst6I CTCTTC 2 cut(s) 315, 330
BstACI GRCGYC 1 cut(s) 854
BstAFI CTTAAG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 453
BstC8I GCNNGC 2 cut(s) 9, 487
BstDEI CTNAG 2 cut(s) 498, 807
BstF5I GGATG 2 cut(s) 70, 600
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 631
BstMBI GATC 1 cut(s) 628
BstMWI GCNNNNNNNGC 2 cut(s) 310, 453
BstNI CCWGG 3 cut(s) 53, 275, 390
BstNSI RCATGY 2 cut(s) 774, 818
BstSCI CCNGG 5 cut(s) 51, 273, 388, 437, 643
BstSFI CTRYAG 2 cut(s) 231, 669
BstV1I GCAGC 2 cut(s) 245, 313
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 489
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 2 cut(s) 70, 600
Cac8I GCNNGC 2 cut(s) 9, 487
CaiI CAGNNNCTG 1 cut(s) 677
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 680
CseI GACGC 1 cut(s) 843
Csp6I GTAC 2 cut(s) 80, 598
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 8 cut(s) 374, 425, 457, 562, 577, 771, 815, 841
CviQI GTAC 2 cut(s) 80, 598
DdeI CTNAG 2 cut(s) 498, 807
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 2 cut(s) 315, 330
EarI CTCTTC 2 cut(s) 315, 330
Eco130I CCWWGG 1 cut(s) 751
Eco32I GATATC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 3 cut(s) 51, 273, 388
EcoRV GATATC 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 751
FaeI CATG 8 cut(s) 377, 428, 460, 565, 580, 774, 818, 844
FaqI GGGAC 1 cut(s) 455
FatI CATG 8 cut(s) 373, 424, 456, 561, 576, 770, 814, 840
FauI CCCGC 1 cut(s) 612
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 234, 302
FokI GGATG 2 cut(s) 77, 587
Fsp4HI GCNGC 2 cut(s) 234, 302
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 234, 302
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 489
HapII CCGG 3 cut(s) 438, 644, 828
HgaI GACGC 1 cut(s) 843
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 854
Hin1II CATG 8 cut(s) 377, 428, 460, 565, 580, 774, 818, 844
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 2 cut(s) 580, 653
HpaII CCGG 3 cut(s) 438, 644, 828
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 3 cut(s) 260, 288, 835
Hpy188I TCNGA 5 cut(s) 132, 334, 410, 469, 786
Hpy188III TCNNGA 2 cut(s) 506, 858
Hpy8I GTNNAC 3 cut(s) 260, 288, 835
Hpy99I CGWCG 1 cut(s) 661
HpyAV CCTTC 1 cut(s) 693
HpyCH4IV ACGT 2 cut(s) 342, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 453
HpyF3I CTNAG 2 cut(s) 498, 807
HpySE526I ACGT 2 cut(s) 342, 474
Hsp92I GRCGYC 1 cut(s) 854
Hsp92II CATG 8 cut(s) 377, 428, 460, 565, 580, 774, 818, 844
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 628
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 4 cut(s) 55, 156, 298, 410
Lsp1109I GCAGC 2 cut(s) 245, 313
LweI GCATC 2 cut(s) 511, 812
MaeI CTAG 1 cut(s) 594
MaeII ACGT 2 cut(s) 342, 474
MaeIII GTNAC 3 cut(s) 589, 697, 793
MalI GATC 1 cut(s) 630
MbiI CCGCTC 1 cut(s) 159
MboI GATC 1 cut(s) 628
MboII GAAGA 4 cut(s) 155, 332, 347, 632
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 5 cut(s) 189, 314, 617, 687, 744
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 7 cut(s) 273, 331, 416, 432, 475, 560, 616
MseI TTAA 4 cut(s) 60, 203, 384, 513
MslI CAYNNNNRTG 2 cut(s) 429, 507
MspA1I CMGCKG 2 cut(s) 212, 304
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 3 cut(s) 438, 644, 828
MspR9I CCNGG 5 cut(s) 53, 275, 390, 439, 645
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 3 cut(s) 53, 275, 390
MwoI GCNNNNNNNGC 2 cut(s) 310, 453
NciI CCSGG 2 cut(s) 439, 645
NdeII GATC 1 cut(s) 628
NlaIII CATG 8 cut(s) 377, 428, 460, 565, 580, 774, 818, 844
NmuCI GTSAC 2 cut(s) 589, 697
NspI RCATGY 2 cut(s) 774, 818
PciSI GCTCTTC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 580, 653
PfoI TCCNGGA 2 cut(s) 51, 388
PkrI GCNGC 2 cut(s) 235, 303
Psp6I CCWGG 3 cut(s) 51, 273, 388
PspGI CCWGG 3 cut(s) 51, 273, 388
PspPI GGNCC 1 cut(s) 680
PstI CTGCAG 2 cut(s) 235, 673
PstNI CAGNNNCTG 1 cut(s) 677
PvuII CAGCTG 2 cut(s) 212, 304
RsaI GTAC 2 cut(s) 81, 599
RsaNI GTAC 2 cut(s) 80, 598
RseI CAYNNNNRTG 2 cut(s) 429, 507
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 4 cut(s) 60, 203, 384, 513
SatI GCNGC 2 cut(s) 234, 302
Sau3AI GATC 1 cut(s) 628
Sau96I GGNCC 1 cut(s) 680
ScrFI CCNGG 5 cut(s) 53, 275, 390, 439, 645
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 2 cut(s) 511, 812
SfcI CTRYAG 2 cut(s) 231, 669
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 2 cut(s) 429, 507
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 5 cut(s) 189, 314, 617, 687, 744
SsiI CCGC 2 cut(s) 159, 605
SspI AATATT 1 cut(s) 329
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 5 cut(s) 51, 273, 388, 437, 643
StyI CCWWGG 1 cut(s) 751
TaiI ACGT 2 cut(s) 345, 477
TaqI TCGA 3 cut(s) 505, 612, 656
TaqII GACCGA 1 cut(s) 149
TasI AATT 5 cut(s) 189, 314, 617, 687, 744
TfiI GAWTC 2 cut(s) 580, 653
Tru1I TTAA 4 cut(s) 60, 203, 384, 513
Tru9I TTAA 4 cut(s) 60, 203, 384, 513
TseFI GTSAC 2 cut(s) 589, 697
TseI GCWGC 2 cut(s) 233, 301
Tsp45I GTSAC 2 cut(s) 589, 697
TspDTI ATGAA 5 cut(s) 31, 432, 593, 630, 756
TspGWI ACGGA 1 cut(s) 674
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 1 cut(s) 617
XceI RCATGY 2 cut(s) 774, 818
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.