RchiOBHm_Chr5g0081291

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001016
Physical Location & Seq
Forward (+)
87263575 .. 87276538
12964 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35554

Sequence Viewer

Length: 1008 bp
ATGGAGAAGCAGATTCTACAGAGGCTGAGATGCTCGGTCCAGAATTACGACTGGGGTAAGAAAGGCGGAGACTCTGAGGTGGGCAGGCTCTATGCCTACAACTCTGGTTCTGAAATTGACCCAGAAAAGCCTTACGCAGAGTTTTGGATGGGAACCCATGACTCTGGACCATCCTTTTTGATTGATAAGGATCTGAATATTAACACGAGGAATGAATCGCTTTTGCTTCTCAAAGACTGGGTTTCTGATAAGCCTCATGACGTGCTGGGTCACAAGGTCGTCGAGAAGTGGGGCTCTGACCTGCCTTTCTTATTTAAGGTGCTTTCGGTGGCAAAGGCTTTGTCAATCCAGGCACATCCAGATCAGGACTTGGCCAAGGCTTTGCACAAGCTGATGCCAAACATTTACAAGGACGACAATCACAAGCCTGAGATGGCGCTTGCTCTAACACATTTTCAGGCTCTTTGTGGTTTTATTACTGTTGAGGAGCTAAAGGGAGTGCTTCATAGTGTCCCAGAGATTACACAAGTGGTGGGTAGTGAAGTTGCAAGCCAAGTGCTTCACAGTACTGCTGAAGATGGGGAGGATAAAGTCAAGTCTGTTCTACGTTCAATTTTCACCCAACTTATGTTAGCTAATAAAGAGATGATAAGTACAGTAACAACCACATTGAAAAGTCGTCTACTTATGGAAAGTCAGACGAGGCAGTTGACAGAGAAGGAAGAGCTGGTGTTGCAATTGGAAAAGCAATATCCAGATGATGTGGGCGTTATATCTGCCTTCTTTCTCAACCATGTCAACCTTAATCCTGGAGAAGTACTATACCTTGGAGCAAATGAACCCCATGCCTATTTATCCGGCGACTGCATCGAGTGCATGGCAAGCTCGGACAACGTAGTGAGGGCCGGCCTTACTCCCAAGCATCAGGATATTAAAACCCTTTGTTCTATGCTCACATACAAACAGGGCTTTCCTGAAATCCTACGAGGAGATTCTATAAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

335

Amino Acids

37.49

Weight (kDa)

5.47

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 6 - 158 2.5e-48 Phosphomannose isomerase type I, catalytic domain
PMI_typeI_hel PF20512 178 - 263 7.3e-15 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 309
AccI GTMKAC 1 cut(s) 682
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 3 cut(s) 568, 655, 819
AgsI TTSAA 2 cut(s) 612, 673
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 2 cut(s) 348, 808
AluBI AGCT 5 cut(s) 391, 490, 635, 727, 885
AluI AGCT 5 cut(s) 391, 490, 635, 727, 885
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 3 cut(s) 372, 903, 907
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 3 cut(s) 37, 167, 903
AsuHPI GGTGA 1 cut(s) 610
AvaII GGWCC 2 cut(s) 37, 167
BalI TGGCCA 1 cut(s) 374
BanII GRGCYC 1 cut(s) 296
BauI CACGAG 1 cut(s) 205
BccI CCATC 4 cut(s) 142, 178, 427, 572
BciT130I CCWGG 2 cut(s) 350, 810
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 309
BmcAI AGTACT 2 cut(s) 568, 819
Bme1390I CCNGG 2 cut(s) 350, 810
Bme18I GGWCC 2 cut(s) 37, 167
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 3 cut(s) 37, 167, 903
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 350, 810
BmrI ACTGGG 2 cut(s) 61, 247
BmsI GCATC 4 cut(s) 20, 384, 876, 931
BmuI ACTGGG 2 cut(s) 61, 247
BpmI CTGGAG 1 cut(s) 831
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 375, 826
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 2 cut(s) 56, 242
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 2 cut(s) 350, 810
BseDI CCNNGG 2 cut(s) 375, 826
BseGI GGATG 3 cut(s) 153, 170, 355
BseJI GATNNNNATC 1 cut(s) 189
BseMII CTCAG 3 cut(s) 17, 66, 420
BseNI ACTGG 2 cut(s) 56, 242
BseRI GAGGAG 2 cut(s) 500, 1002
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 3 cut(s) 374, 905, 909
BsiSI CCGG 2 cut(s) 858, 906
BslFI GGGAC 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 3 cut(s) 374, 905, 909
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 190, 361
BspACI CCGC 1 cut(s) 66
BspANI GGCC 3 cut(s) 374, 905, 909
BspCNI CTCAG 3 cut(s) 18, 67, 421
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 717
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 2 cut(s) 56, 242
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 2 cut(s) 375, 826
BssMI GATC 2 cut(s) 190, 361
BssSI CACGAG 1 cut(s) 205
BssT1I CCWWGG 2 cut(s) 375, 826
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 2 cut(s) 350, 810
Bst4CI ACNGT 3 cut(s) 481, 566, 658
Bst6I CTCTTC 1 cut(s) 717
BstAPI GCANNNNNTGC 1 cut(s) 873
BstC8I GCNNGC 5 cut(s) 86, 441, 550, 883, 907
BstDEI CTNAG 3 cut(s) 26, 75, 429
BstF5I GGATG 3 cut(s) 153, 170, 355
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 2 cut(s) 193, 364
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 2 cut(s) 190, 361
BstMWI GCNNNNNNNGC 3 cut(s) 733, 873, 882
BstNI CCWGG 2 cut(s) 350, 810
BstSCI CCNGG 2 cut(s) 348, 808
BstSFI CTRYAG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 3 cut(s) 374, 905, 909
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 3 cut(s) 153, 170, 355
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 5 cut(s) 86, 441, 550, 883, 907
CaiI CAGNNNCTG 1 cut(s) 25
CciI TCATGA 1 cut(s) 256
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 3 cut(s) 37, 167, 903
Csp6I GTAC 3 cut(s) 567, 654, 818
CviAII CATG 5 cut(s) 158, 257, 794, 845, 877
CviQI GTAC 3 cut(s) 567, 654, 818
DdeI CTNAG 3 cut(s) 26, 75, 429
DpnI GATC 2 cut(s) 192, 363
DpnII GATC 2 cut(s) 190, 361
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 375, 826
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 37, 167
Eco57I CTGAAG 1 cut(s) 594
EcoRII CCWGG 2 cut(s) 348, 808
EcoT14I CCWWGG 2 cut(s) 375, 826
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 375, 826
FaeI CATG 5 cut(s) 161, 260, 797, 848, 880
FaqI GGGAC 1 cut(s) 497
FatI CATG 5 cut(s) 157, 256, 793, 844, 876
FblI GTMKAC 1 cut(s) 682
FokI GGATG 3 cut(s) 157, 160, 342
FriOI GRGCYC 1 cut(s) 296
FseI GGCCGGCC 1 cut(s) 909
GlaI GCGC 1 cut(s) 438
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 831
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 3 cut(s) 374, 905, 909
HapII CCGG 2 cut(s) 858, 906
HhaI GCGC 1 cut(s) 439
Hin1II CATG 5 cut(s) 161, 260, 797, 848, 880
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 2 cut(s) 711, 799
HindII GTYRAC 2 cut(s) 711, 799
HinfI GANTC 5 cut(s) 13, 71, 161, 215, 992
HpaII CCGG 2 cut(s) 858, 906
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 3 cut(s) 683, 711, 799
Hpy188I TCNGA 7 cut(s) 76, 112, 195, 247, 298, 699, 889
Hpy188III TCNNGA 9 cut(s) 40, 165, 257, 283, 359, 365, 755, 926, 974
Hpy8I GTNNAC 3 cut(s) 683, 711, 799
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 712, 790
HpyCH4III ACNGT 3 cut(s) 481, 566, 658
HpyCH4IV ACGT 3 cut(s) 261, 607, 894
HpyCH4V TGCA 5 cut(s) 385, 548, 736, 867, 876
HpyF10VI GCNNNNNNNGC 3 cut(s) 733, 873, 882
HpyF3I CTNAG 3 cut(s) 26, 75, 429
HpySE526I ACGT 3 cut(s) 261, 607, 894
Hsp92II CATG 5 cut(s) 161, 260, 797, 848, 880
HspAI GCGC 1 cut(s) 437
KroI GCCGGC 1 cut(s) 905
KroNI GCCGGC 1 cut(s) 907
Kzo9I GATC 2 cut(s) 190, 361
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 487, 830
LweI GCATC 4 cut(s) 20, 384, 876, 931
MaeII ACGT 3 cut(s) 261, 607, 894
MaeIII GTNAC 2 cut(s) 269, 658
MalI GATC 2 cut(s) 192, 363
MboI GATC 2 cut(s) 190, 361
MboII GAAGA 2 cut(s) 587, 734
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 4 cut(s) 43, 114, 612, 737
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 2 cut(s) 65, 155
MnlI CCTC 9 cut(s) 15, 70, 201, 264, 478, 577, 696, 894, 980
Mox20I TGGCCA 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 905
MscI TGGCCA 1 cut(s) 374
MseI TTAA 4 cut(s) 201, 315, 804, 933
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 2 cut(s) 858, 906
MspR9I CCNGG 2 cut(s) 350, 810
MunI CAATTG 1 cut(s) 737
MvaI CCWGG 2 cut(s) 350, 810
MwoI GCNNNNNNNGC 3 cut(s) 733, 873, 882
NaeI GCCGGC 1 cut(s) 907
NdeII GATC 2 cut(s) 190, 361
NgoMIV GCCGGC 1 cut(s) 905
NlaIII CATG 5 cut(s) 161, 260, 797, 848, 880
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 269
PagI TCATGA 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 717
PdiI GCCGGC 1 cut(s) 907
PfeI GAWTC 3 cut(s) 13, 215, 992
PfoI TCCNGGA 1 cut(s) 808
PleI GAGTC 2 cut(s) 65, 155
PpsI GAGTC 2 cut(s) 65, 155
Psp6I CCWGG 2 cut(s) 348, 808
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 2 cut(s) 348, 808
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 3 cut(s) 37, 167, 903
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 190
RigI GGCCGGCC 1 cut(s) 909
RsaI GTAC 3 cut(s) 568, 655, 819
RsaNI GTAC 3 cut(s) 567, 654, 818
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 4 cut(s) 201, 315, 804, 933
Sau3AI GATC 2 cut(s) 190, 361
Sau96I GGNCC 3 cut(s) 37, 167, 903
ScaI AGTACT 2 cut(s) 568, 819
SchI GAGTC 2 cut(s) 65, 155
ScrFI CCNGG 2 cut(s) 350, 810
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 4 cut(s) 20, 384, 876, 931
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 2 cut(s) 37, 167
Sse9I AATT 4 cut(s) 43, 114, 612, 737
SsiI CCGC 1 cut(s) 66
SspI AATATT 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 348, 808
StyI CCWWGG 2 cut(s) 375, 826
TaaI ACNGT 3 cut(s) 481, 566, 658
TaiI ACGT 3 cut(s) 264, 610, 897
TaqI TCGA 2 cut(s) 282, 870
TaqII GACCGA 1 cut(s) 25
TasI AATT 4 cut(s) 43, 114, 612, 737
TatI WGTACW 3 cut(s) 566, 653, 817
TfiI GAWTC 3 cut(s) 13, 215, 992
Tru1I TTAA 4 cut(s) 201, 315, 804, 933
Tru9I TTAA 4 cut(s) 201, 315, 804, 933
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 228, 494, 852
VpaK11BI GGWCC 2 cut(s) 37, 167
XmiI GTMKAC 1 cut(s) 682
ZrmI AGTACT 2 cut(s) 568, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.