Rw1G014740

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001016
Physical Location & Seq
Forward (+)
32930508 .. 32933737
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014740.1

Sequence Viewer

Length: 948 bp
ATGCTTCAGTTCCCAGTTTCAGAAGCTTCTGATGCCATCTTGGCGCGGCGCGTGGCGGCGCGTCGGTGGCGCTGGAGGTGGTCCGATGCTGAGGTTGTAGCCCGTCTGGCGGTGTGTCTGCATGTCATTCCTTTGGTTGGAGTTATTCGATTCTCCCTCCTCTGGCCGATACAGGCACATCCGGATAAGGGCTTGGCCAAGGTTTTGCACAAGTTTATGCCAAGTGCTTACAAGGACGATAATCACAAGCCTGAGATGGCACTTGCTATAACATATTTTCAGGCTCTTTGTGGCTTTATCACTCTCGAGCAAACCAAGTGTTTGATACCAGCAGATGGGGAAGATAAAGTCAAGTCTGTTCTGCGTTCAATTTTTACCCAACTCATGTCAGCGACCAAAGAGATTGTAACTACAGCAACAACTAAACTGAAAGATCGTTTGCACATGGAAAATCAGGTGAGGCAGTTGACAGAGAGGGAGCAACTGGTGTTGGAATTGGAAAGTCCTGGAGAAGCACTATACCTCGGAGCAAATGAACCCCATGCCTATATGTTCGGTGACTGCATCGAGTGCATGGCAACTTCTGACAATGTGGTCAGGGCCGGCCTCACTCCCAAGCATCGGGATGGCTGCCCTGAAATCCTGAAAGGAGTTACCTTAAATTCTTATGTGACAAGGTACCTCCCACCTTTTGACGAATTTGAGGTTGATCGATGCCATCTTCCCCAGGGAGAATCTGTGGAATTTCCTGCAGTCCAAGGTCCTTCCATTTTCGTCGTCAATTTTGGGGAGGGAATCATATATACAAGCAATTTTACAGGAGAAATAAATATCACACAAGGAGAGGTTCTTTTCGTGCCTGCAGATACTGAGATTAGCATAACAAGTGCATCTGAGTTGAACATATATAAAGCCGGAGTGAACAACATGTTCTTTCAAGTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

315

Amino Acids

35.28

Weight (kDa)

5.55

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 56 - 99 3.9e-15 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
Acc65I GGTACC 1 cut(s) 678
AccB1I GGYRCC 1 cut(s) 678
AccB7I CCANNNNNTGG 1 cut(s) 335
AccII CGCG 3 cut(s) 46, 51, 61
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 3 cut(s) 46, 56, 110
AcoI YGGCCR 2 cut(s) 164, 195
AcsI RAATTY 3 cut(s) 661, 698, 743
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 6 cut(s) 109, 137, 162, 188, 335, 621
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 3 cut(s) 369, 901, 938
AjnI CCWGG 2 cut(s) 505, 726
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 869
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 4 cut(s) 164, 195, 600, 604
ApeKI GCWGC 1 cut(s) 630
ApoI RAATTY 3 cut(s) 661, 698, 743
Asp718I GGTACC 1 cut(s) 678
AspLEI GCGC 4 cut(s) 46, 51, 61, 72
AspS9I GGNCC 3 cut(s) 81, 600, 761
AsuHPI GGTGA 2 cut(s) 469, 569
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 2 cut(s) 81, 761
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 1 cut(s) 678
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 617
BccI CCATC 5 cut(s) 44, 250, 329, 620, 726
BciT130I CCWGG 2 cut(s) 507, 728
BfmI CTRYAG 3 cut(s) 411, 750, 861
BfoI RGCGCY 1 cut(s) 73
BglI GCCNNNNNGGC 2 cut(s) 41, 107
BisI GCNGC 3 cut(s) 47, 57, 631
BlsI GCNGC 3 cut(s) 48, 58, 632
Bme1390I CCNGG 2 cut(s) 507, 728
Bme18I GGWCC 2 cut(s) 81, 761
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 81, 600, 761
BmiI GGNNCC 1 cut(s) 680
BmrFI CCNGG 2 cut(s) 507, 728
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 6 cut(s) 22, 76, 573, 628, 704, 899
BmuI ACTGGG 1 cut(s) 8
BpmI CTGGAG 2 cut(s) 94, 528
Bpu10I CCTNAGC 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 712
BsaJI CCNNGG 5 cut(s) 198, 523, 726, 727, 757
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 137, 162, 188, 335, 621
Bse118I RCCGGY 1 cut(s) 602
Bse1I ACTGG 2 cut(s) 14, 489
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 2 cut(s) 507, 728
BseCI ATCGAT 1 cut(s) 712
BseDI CCNNGG 5 cut(s) 198, 523, 726, 727, 757
BseGI GGATG 2 cut(s) 178, 631
BseLI CCNNNNNNNGG 6 cut(s) 109, 137, 162, 188, 335, 621
BseMII CTCAG 4 cut(s) 81, 243, 861, 885
BseNI ACTGG 2 cut(s) 14, 489
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 617
Bsh1236I CGCG 3 cut(s) 46, 51, 61
BshFI GGCC 4 cut(s) 166, 197, 602, 606
BshNI GGYRCC 1 cut(s) 678
BshVI ATCGAT 1 cut(s) 712
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 3 cut(s) 182, 603, 915
BslFI GGGAC 1 cut(s) 926
BslI CCNNNNNNNGG 6 cut(s) 109, 137, 162, 188, 335, 621
BsmFI GGGAC 1 cut(s) 926
BsnI GGCC 4 cut(s) 166, 197, 602, 606
BsoBI CYCGRG 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 2 cut(s) 433, 709
BspACI CCGC 3 cut(s) 46, 56, 110
BspANI GGCC 4 cut(s) 166, 197, 602, 606
BspCNI CTCAG 4 cut(s) 82, 244, 862, 886
BspDI ATCGAT 1 cut(s) 712
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 3 cut(s) 46, 51, 61
BspLI GGNNCC 1 cut(s) 680
BspMAI CTGCAG 2 cut(s) 754, 865
BspT107I GGYRCC 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 602
BsrI ACTGG 2 cut(s) 14, 489
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 5 cut(s) 198, 523, 726, 727, 757
BssMI GATC 2 cut(s) 433, 709
BssT1I CCWWGG 2 cut(s) 198, 757
Bst2UI CCWGG 2 cut(s) 507, 728
BstAPI GCANNNNNTGC 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 604, 861
BstDEI CTNAG 4 cut(s) 90, 252, 870, 894
BstF5I GGATG 2 cut(s) 178, 631
BstFNI CGCG 3 cut(s) 46, 51, 61
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 4 cut(s) 46, 51, 61, 72
BstKTI GATC 2 cut(s) 436, 712
BstMBI GATC 2 cut(s) 433, 709
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 67, 107, 570
BstNI CCWGG 2 cut(s) 507, 728
BstNSI RCATGY 2 cut(s) 125, 931
BstSCI CCNGG 2 cut(s) 505, 726
BstSFI CTRYAG 3 cut(s) 411, 750, 861
BstUI CGCG 3 cut(s) 46, 51, 61
BstV1I GCAGC 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 712
BsuRI GGCC 4 cut(s) 166, 197, 602, 606
BsuTUI ATCGAT 1 cut(s) 712
BtsCI GGATG 2 cut(s) 178, 631
Cac8I GCNNGC 2 cut(s) 604, 861
CaiI CAGNNNCTG 1 cut(s) 869
CfoI GCGC 4 cut(s) 46, 51, 61, 72
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 3 cut(s) 81, 600, 761
ClaI ATCGAT 1 cut(s) 712
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 679
CviAII CATG 6 cut(s) 122, 385, 445, 542, 574, 928
CviQI GTAC 1 cut(s) 679
DdeI CTNAG 4 cut(s) 90, 252, 870, 894
DpnI GATC 2 cut(s) 435, 711
DpnII GATC 2 cut(s) 433, 709
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 2 cut(s) 164, 195
Eco130I CCWWGG 2 cut(s) 198, 757
Eco47I GGWCC 2 cut(s) 81, 761
Eco88I CYCGRG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 761
EcoRII CCWGG 2 cut(s) 505, 726
EcoT14I CCWWGG 2 cut(s) 198, 757
ErhI CCWWGG 2 cut(s) 198, 757
FaeI CATG 6 cut(s) 125, 388, 448, 545, 577, 931
FaqI GGGAC 1 cut(s) 926
FatI CATG 6 cut(s) 121, 384, 444, 541, 573, 927
Fnu4HI GCNGC 3 cut(s) 47, 57, 631
FokI GGATG 2 cut(s) 165, 638
FseI GGCCGGCC 1 cut(s) 606
Fsp4HI GCNGC 3 cut(s) 47, 57, 631
GlaI GCGC 4 cut(s) 45, 50, 60, 71
GluI GCNGC 3 cut(s) 47, 57, 631
GsuI CTGGAG 2 cut(s) 94, 528
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 4 cut(s) 166, 197, 602, 606
HapII CCGG 3 cut(s) 182, 603, 915
HgaI GACGC 1 cut(s) 50
HhaI GCGC 4 cut(s) 46, 51, 61, 72
Hin1II CATG 6 cut(s) 125, 388, 448, 545, 577, 931
Hin6I GCGC 4 cut(s) 44, 49, 59, 70
HinP1I GCGC 4 cut(s) 44, 49, 59, 70
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 150, 734, 795
HpaII CCGG 3 cut(s) 182, 603, 915
HphI GGTGA 2 cut(s) 469, 569
Hpy166II GTNNAC 2 cut(s) 468, 922
Hpy188I TCNGA 6 cut(s) 22, 31, 85, 527, 586, 895
Hpy188III TCNNGA 4 cut(s) 182, 305, 623, 643
Hpy8I GTNNAC 2 cut(s) 468, 922
Hpy99I CGWCG 2 cut(s) 66, 779
HpyAV CCTTC 1 cut(s) 774
HpyCH4V TGCA 8 cut(s) 121, 208, 442, 564, 573, 752, 863, 890
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 67, 107, 570
HpyF3I CTNAG 4 cut(s) 90, 252, 870, 894
Hsp92II CATG 6 cut(s) 125, 388, 448, 545, 577, 931
HspAI GCGC 4 cut(s) 44, 49, 59, 70
Kpn2I TCCGGA 1 cut(s) 181
KpnI GGTACC 1 cut(s) 682
KroI GCCGGC 1 cut(s) 602
KroNI GCCGGC 1 cut(s) 604
Kzo9I GATC 2 cut(s) 433, 709
LmnI GCTCC 2 cut(s) 478, 527
Lsp1109I GCAGC 1 cut(s) 617
LweI GCATC 6 cut(s) 22, 76, 573, 628, 704, 899
MaeIII GTNAC 4 cut(s) 406, 557, 652, 670
MalI GATC 2 cut(s) 435, 711
MboI GATC 2 cut(s) 433, 709
MboII GAAGA 2 cut(s) 353, 713
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 7 cut(s) 369, 494, 661, 698, 743, 781, 811
MluNI TGGCCA 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 118, 471
Mox20I TGGCCA 1 cut(s) 197
MroI TCCGGA 1 cut(s) 181
MroNI GCCGGC 1 cut(s) 602
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 659
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 3 cut(s) 182, 603, 915
MspR9I CCNGG 2 cut(s) 507, 728
MteI GCGCNGCGC 1 cut(s) 47
MvaI CCWGG 2 cut(s) 507, 728
MvnI CGCG 3 cut(s) 46, 51, 61
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 67, 107, 570
NaeI GCCGGC 1 cut(s) 604
NdeII GATC 2 cut(s) 433, 709
NgoMIV GCCGGC 1 cut(s) 602
NlaIII CATG 6 cut(s) 125, 388, 448, 545, 577, 931
NlaIV GGNNCC 1 cut(s) 680
NmuCI GTSAC 2 cut(s) 557, 670
NspI RCATGY 2 cut(s) 125, 931
PaeR7I CTCGAG 1 cut(s) 305
PasI CCCWGGG 1 cut(s) 727
PciI ACATGT 1 cut(s) 927
PdiI GCCGGC 1 cut(s) 604
PfeI GAWTC 3 cut(s) 150, 734, 795
PflMI CCANNNNNTGG 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 3 cut(s) 48, 58, 632
PpuMI RGGWCCY 1 cut(s) 761
PscI ACATGT 1 cut(s) 927
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 2 cut(s) 505, 726
PspGI CCWGG 2 cut(s) 505, 726
PspN4I GGNNCC 1 cut(s) 680
PspPI GGNCC 3 cut(s) 81, 600, 761
PspPPI RGGWCCY 1 cut(s) 761
PstI CTGCAG 2 cut(s) 754, 865
PstNI CAGNNNCTG 1 cut(s) 869
RigI GGCCGGCC 1 cut(s) 606
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 1 cut(s) 659
SatI GCNGC 3 cut(s) 47, 57, 631
Sau3AI GATC 2 cut(s) 433, 709
Sau96I GGNCC 3 cut(s) 81, 600, 761
ScrFI CCNGG 2 cut(s) 507, 728
SfaNI GCATC 6 cut(s) 22, 76, 573, 628, 704, 899
SfcI CTRYAG 3 cut(s) 411, 750, 861
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 2 cut(s) 81, 761
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 7 cut(s) 369, 494, 661, 698, 743, 781, 811
SsiI CCGC 3 cut(s) 46, 56, 110
StyD4I CCNGG 2 cut(s) 505, 726
StyI CCWWGG 2 cut(s) 198, 757
TaqI TCGA 4 cut(s) 148, 306, 567, 712
TasI AATT 7 cut(s) 369, 494, 661, 698, 743, 781, 811
TauI GCSGC 2 cut(s) 49, 59
TfiI GAWTC 3 cut(s) 150, 734, 795
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TseFI GTSAC 2 cut(s) 557, 670
TseI GCWGC 1 cut(s) 630
Tsp45I GTSAC 2 cut(s) 557, 670
TspDTI ATGAA 1 cut(s) 549
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 81, 761
XapI RAATTY 3 cut(s) 661, 698, 743
XceI RCATGY 2 cut(s) 125, 931
XhoI CTCGAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.