Prupe.3G142100_v2.0.a1

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001016
Physical Location & Seq
Reverse (-)
15401199 .. 15404661
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G142100.1

Sequence Viewer

Length: 1326 bp
ATGGAGTCCATTGGCAAATCAATGAAGCACCACAATCAAAGGAGCATCCGTCTTCAGAGGCTGAGATGCTCTGTTCAGAACTATGACTGGGGGAAGAGAGGCACAGACTCTCTGGTGGCTAGGCTATCTGCTCTCAATTCTTCCTCTGAAATTGACCCAGAAAAGCCTTATGCTGAAATTTGGATGGGAACCCATGAGTCTGGACCTTCTTTTTTGATTCAAAATGGGGATGAGAATAACGGGTTTTTGTCAATTGGGTCTGAGAGTTTGAGTCTCAAAGATTGGGTTCTGGAAAACCCAAAGGTGCTTGGTGAGAAGGTGGTTCAAAAATGGGGCTCTGACTTGCCTTTCTTGTTTAAGGTGCTTTCTGTGGGAAAGGCATTGTCAATACAGGCACACCCAGATAAGGAATTGGCTAAGGTTTTGCATAAGTTTATGCCAAATCTTTACAAGGATGCCAATCACAAGCCTGAGATGGCCTTGGCTGTTACACATTTTGAGGCTCTTTGTGGTTTCATCAGTCTTGAGGAGCTTAAAGTTGTGCTTGATAATGTTCCTGAGATTGAGGAACTGGTTGGTAGTGAAGATGCAAACAAAGTCTTTGACATTACTGATCGAGATGATGAGAATAAAGTAACGTCTGTTCTGCGTTCAATTTTCACCCACCTCATGTCAGCTAGCAAAGAGATGATAACTACAATAATCACTAAAATGAAAAATCGTTTACACATCGAAAGTCAGGGGAGACTCTTGACAGAAAAGGAACAGCTGGTGTTGCAGTTGGAAAGGCAATATCCAGCTGACGTGGGTGTTATATCTGCCTTCTTTTTGAACCATGTGAATCTTAAGCCTGGAGAAGCACTGTACATTGGAGCGAATGAACCTCATGCCTATATTTTCGGCGAGTGCATTGAGTGTATGGCAACCTCAGACAATGTAGTGAGGGCTGGCCTAACTCCTAAGCATATGGATGTCAACACCCTTTGTTCTATGCTCACATACAAGCAGGGCTATCCTAAAATCCTGCAAGGAGTTGCTTTAGGTCCTTATGTGACAAGGTACCTCCCGCCTTTCGATGAATTTGAGGTCGATTGCTGTCAGCTTCCCCAGGGAGAATCAGCAGAGTTCCCTGCAGTCCCAGGTCCTTCCATTTTTGTGGTGACTTTTGGGGAGGGAATCATATATTCAATTGATCTTAAAGGAGATGTAATTACAGAAGGAGATGTTCTCTTTGCACCTGCTAACACTCAGATTAGCATAACAAGTGCATCTCAGTTGCAGATATACAGAGCAGGAGTGAACAGCATGTTCTTTCAAGCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

442

Amino Acids

49.06

Weight (kDa)

5.32

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1246
Acc36I ACCTGC 1 cut(s) 1246
Acc65I GGTACC 1 cut(s) 1059
AccB1I GGYRCC 1 cut(s) 1059
AciI CCGC 1 cut(s) 1067
AcsI RAATTY 2 cut(s) 177, 1079
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 2 cut(s) 866, 1061
AfiI CCNNNNNNNGG 1 cut(s) 406
AflII CTTAAG 1 cut(s) 845
AgsI TTSAA 6 cut(s) 221, 326, 654, 832, 1188, 1316
AjiI CACGTC 1 cut(s) 805
AjnI CCWGG 3 cut(s) 850, 1107, 1138
AluBI AGCT 5 cut(s) 532, 677, 769, 800, 1102
AluI AGCT 5 cut(s) 532, 677, 769, 800, 1102
Alw26I GTCTC 2 cut(s) 278, 739
AlwNI CAGNNNCTG 1 cut(s) 61
AoxI GGCC 2 cut(s) 477, 949
ApoI RAATTY 2 cut(s) 177, 1079
Asp718I GGTACC 1 cut(s) 1059
AspS9I GGNCC 3 cut(s) 203, 1043, 1142
AsuHPI GGTGA 3 cut(s) 323, 652, 1171
AsuNHI GCTAGC 1 cut(s) 677
AvaII GGWCC 3 cut(s) 203, 1043, 1142
BanI GGYRCC 1 cut(s) 1059
BanII GRGCYC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 44
BccI CCATC 2 cut(s) 178, 469
BciT130I CCWGG 3 cut(s) 852, 1109, 1140
BcoDI GTCTC 2 cut(s) 278, 739
BfaI CTAG 2 cut(s) 120, 678
BfmI CTRYAG 1 cut(s) 1131
BfrI CTTAAG 1 cut(s) 845
BfuAI ACCTGC 1 cut(s) 1246
Bme1390I CCNGG 3 cut(s) 852, 1109, 1140
Bme18I GGWCC 3 cut(s) 203, 1043, 1142
BmgBI CACGTC 1 cut(s) 805
BmgT120I GGNCC 3 cut(s) 203, 1043, 1142
BmiI GGNNCC 2 cut(s) 190, 1061
BmrFI CCNGG 3 cut(s) 852, 1109, 1140
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 5 cut(s) 54, 56, 445, 577, 1277
BmtI GCTAGC 1 cut(s) 681
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 1212, 1244
BpmI CTGGAG 1 cut(s) 873
Bpu10I CCTNAGC 2 cut(s) 417, 960
BpuEI CTTGAG 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 4 cut(s) 480, 1107, 1108, 1138
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 92, 576
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 3 cut(s) 852, 1109, 1140
BseDI CCNNGG 4 cut(s) 480, 1107, 1108, 1138
BseGI GGATG 5 cut(s) 45, 189, 235, 460, 976
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 7 cut(s) 53, 252, 462, 549, 942, 1262, 1286
BseNI ACTGG 2 cut(s) 92, 576
BseRI GAGGAG 1 cut(s) 542
BshFI GGCC 2 cut(s) 479, 951
BshNI GGYRCC 1 cut(s) 1059
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 2 cut(s) 278, 739
BsmFI GGGAC 1 cut(s) 1121
BsnI GGCC 2 cut(s) 479, 951
Bsp1286I GDGCHC 1 cut(s) 338
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 2 cut(s) 613, 1192
BspACI CCGC 1 cut(s) 1067
BspANI GGCC 2 cut(s) 479, 951
BspCNI CTCAG 7 cut(s) 54, 253, 463, 550, 941, 1261, 1285
BspLI GGNNCC 2 cut(s) 190, 1061
BspMAI CTGCAG 1 cut(s) 1135
BspMI ACCTGC 1 cut(s) 1246
BspOI GCTAGC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 1059
BspTI CTTAAG 1 cut(s) 845
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 2 cut(s) 92, 576
BssECI CCNNGG 4 cut(s) 480, 1107, 1108, 1138
BssMI GATC 2 cut(s) 613, 1192
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 3 cut(s) 852, 1109, 1140
Bst4CI ACNGT 1 cut(s) 864
Bst6I CTCTTC 1 cut(s) 89
BstAFI CTTAAG 1 cut(s) 845
BstAUI TGTACA 1 cut(s) 864
BstC8I GCNNGC 2 cut(s) 679, 949
BstDEI CTNAG 9 cut(s) 62, 261, 417, 471, 558, 928, 960, 1248, 1272
BstF5I GGATG 5 cut(s) 45, 189, 235, 460, 976
BstKTI GATC 2 cut(s) 616, 1195
BstMAI GTCTC 2 cut(s) 278, 739
BstMBI GATC 2 cut(s) 613, 1192
BstMWI GCNNNNNNNGC 1 cut(s) 775
BstNI CCWGG 3 cut(s) 852, 1109, 1140
BstNSI RCATGY 1 cut(s) 1309
BstSCI CCNGG 3 cut(s) 850, 1107, 1138
BstSFI CTRYAG 1 cut(s) 1131
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 2 cut(s) 200, 1156
BsuRI GGCC 2 cut(s) 479, 951
BtrI CACGTC 1 cut(s) 805
BtsCI GGATG 5 cut(s) 45, 189, 235, 460, 976
BtsIMutI CAGTG 1 cut(s) 860
BveI ACCTGC 1 cut(s) 1246
Cac8I GCNNGC 2 cut(s) 679, 949
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 203, 1043, 1142
Csp6I GTAC 2 cut(s) 865, 1060
CviAII CATG 5 cut(s) 194, 670, 836, 887, 1306
CviQI GTAC 2 cut(s) 865, 1060
DdeI CTNAG 9 cut(s) 62, 261, 417, 471, 558, 928, 960, 1248, 1272
DpnI GATC 2 cut(s) 615, 1194
DpnII GATC 2 cut(s) 613, 1192
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 338
Eco47I GGWCC 3 cut(s) 203, 1043, 1142
Eco57I CTGAAG 1 cut(s) 38
EcoO109I RGGNCCY 2 cut(s) 1043, 1142
EcoRII CCWGG 3 cut(s) 850, 1107, 1138
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 5 cut(s) 197, 673, 839, 890, 1309
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 1 cut(s) 1121
FatI CATG 5 cut(s) 193, 669, 835, 886, 1305
FauI CCCGC 1 cut(s) 1074
FauNDI CATATG 1 cut(s) 966
FokI GGATG 5 cut(s) 32, 196, 242, 467, 983
FriOI GRGCYC 1 cut(s) 338
FspBI CTAG 2 cut(s) 120, 678
GsuI CTGGAG 1 cut(s) 873
HaeIII GGCC 2 cut(s) 479, 951
Hin1II CATG 5 cut(s) 197, 673, 839, 890, 1309
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HinfI GANTC 9 cut(s) 5, 107, 197, 217, 271, 747, 841, 1115, 1176
HphI GGTGA 3 cut(s) 323, 652, 1171
Hpy166II GTNNAC 3 cut(s) 725, 976, 1300
Hpy188I TCNGA 7 cut(s) 57, 78, 148, 262, 340, 931, 1251
Hpy188III TCNNGA 6 cut(s) 201, 290, 524, 557, 617, 751
Hpy8I GTNNAC 3 cut(s) 725, 976, 1300
HpyAV CCTTC 5 cut(s) 216, 310, 832, 1155, 1211
HpyCH4III ACNGT 1 cut(s) 864
HpyCH4IV ACGT 2 cut(s) 638, 804
HpyCH4V TGCA 9 cut(s) 427, 590, 778, 909, 1027, 1133, 1235, 1268, 1279
HpyF10VI GCNNNNNNNGC 1 cut(s) 775
HpyF3I CTNAG 9 cut(s) 62, 261, 417, 471, 558, 928, 960, 1248, 1272
HpySE526I ACGT 2 cut(s) 638, 804
Hsp92II CATG 5 cut(s) 197, 673, 839, 890, 1309
KpnI GGTACC 1 cut(s) 1063
Kzo9I GATC 2 cut(s) 613, 1192
LmnI GCTCC 3 cut(s) 42, 529, 872
LweI GCATC 5 cut(s) 54, 56, 445, 577, 1277
MaeI CTAG 2 cut(s) 120, 678
MaeII ACGT 2 cut(s) 638, 804
MaeIII GTNAC 4 cut(s) 487, 634, 1051, 1159
MalI GATC 2 cut(s) 615, 1194
MboI GATC 2 cut(s) 613, 1192
MboII GAAGA 4 cut(s) 44, 106, 132, 596
MfeI CAATTG 2 cut(s) 252, 1188
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 9 cut(s) 136, 150, 177, 252, 410, 654, 1079, 1188, 1209
MlyI GAGTC 5 cut(s) 14, 101, 206, 280, 741
MmeI TCCRAC 1 cut(s) 762
MseI TTAA 4 cut(s) 357, 534, 846, 1197
MslI CAYNNNNRTG 3 cut(s) 710, 969, 1154
MspA1I CMGCKG 2 cut(s) 769, 800
MspCI CTTAAG 1 cut(s) 845
MspR9I CCNGG 3 cut(s) 852, 1109, 1140
MunI CAATTG 2 cut(s) 252, 1188
MvaI CCWGG 3 cut(s) 852, 1109, 1140
MwoI GCNNNNNNNGC 1 cut(s) 775
NdeI CATATG 1 cut(s) 966
NdeII GATC 2 cut(s) 613, 1192
NheI GCTAGC 1 cut(s) 677
NlaIII CATG 5 cut(s) 197, 673, 839, 890, 1309
NlaIV GGNNCC 2 cut(s) 190, 1061
NmuCI GTSAC 2 cut(s) 1051, 1159
NspI RCATGY 1 cut(s) 1309
PaqCI CACCTGC 1 cut(s) 1246
PasI CCCWGGG 1 cut(s) 1108
PfeI GAWTC 4 cut(s) 217, 841, 1115, 1176
PleI GAGTC 5 cut(s) 13, 101, 205, 279, 741
PpsI GAGTC 5 cut(s) 13, 101, 205, 279, 741
PpuMI RGGWCCY 2 cut(s) 1043, 1142
Psp5II RGGWCCY 2 cut(s) 1043, 1142
Psp6I CCWGG 3 cut(s) 850, 1107, 1138
PspGI CCWGG 3 cut(s) 850, 1107, 1138
PspN4I GGNNCC 2 cut(s) 190, 1061
PspPI GGNCC 3 cut(s) 203, 1043, 1142
PspPPI RGGWCCY 2 cut(s) 1043, 1142
PsrI GAACNNNNNNTAC 2 cut(s) 627, 659
PstI CTGCAG 1 cut(s) 1135
PstNI CAGNNNCTG 1 cut(s) 61
PvuII CAGCTG 2 cut(s) 769, 800
RsaI GTAC 2 cut(s) 866, 1061
RsaNI GTAC 2 cut(s) 865, 1060
RseI CAYNNNNRTG 3 cut(s) 710, 969, 1154
SaqAI TTAA 4 cut(s) 357, 534, 846, 1197
Sau3AI GATC 2 cut(s) 613, 1192
Sau96I GGNCC 3 cut(s) 203, 1043, 1142
SchI GAGTC 5 cut(s) 14, 101, 206, 280, 741
ScrFI CCNGG 3 cut(s) 852, 1109, 1140
SduI GDGCHC 1 cut(s) 338
SfaNI GCATC 5 cut(s) 54, 56, 445, 577, 1277
SfcI CTRYAG 1 cut(s) 1131
SinI GGWCC 3 cut(s) 203, 1043, 1142
SmiMI CAYNNNNRTG 3 cut(s) 710, 969, 1154
SmlI CTYRAG 2 cut(s) 524, 845
SmoI CTYRAG 2 cut(s) 524, 845
Sse9I AATT 9 cut(s) 136, 150, 177, 252, 410, 654, 1079, 1188, 1209
SsiI CCGC 1 cut(s) 1067
SspMI CTAG 2 cut(s) 120, 678
StyD4I CCNGG 3 cut(s) 850, 1107, 1138
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 864
TaiI ACGT 2 cut(s) 641, 807
TaqI TCGA 4 cut(s) 616, 732, 1074, 1089
TasI AATT 9 cut(s) 136, 150, 177, 252, 410, 654, 1079, 1188, 1209
TatI WGTACW 1 cut(s) 864
TfiI GAWTC 4 cut(s) 217, 841, 1115, 1176
Tru1I TTAA 4 cut(s) 357, 534, 846, 1197
Tru9I TTAA 4 cut(s) 357, 534, 846, 1197
TscAI CASTG 1 cut(s) 867
TseFI GTSAC 2 cut(s) 1051, 1159
Tsp45I GTSAC 2 cut(s) 1051, 1159
TspDTI ATGAA 5 cut(s) 38, 505, 728, 894, 1092
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 1 cut(s) 867
Vha464I CTTAAG 1 cut(s) 845
VpaK11BI GGWCC 3 cut(s) 203, 1043, 1142
XapI RAATTY 2 cut(s) 177, 1079
XceI RCATGY 1 cut(s) 1309
XspI CTAG 2 cut(s) 120, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.