Rw7G020180

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001016
Physical Location & Seq
Reverse (-)
22778479 .. 22780320
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020180.1

Sequence Viewer

Length: 1236 bp
ATGGAGAAGTCATTGATTCACAAATCAATGAAGCTGAGGCAGAGGAGTGTTCAGAGGCTGAGCTGCTCTGTTCAGAACTATGACTGGGGGAAGAAAGGCCCGGACTCTGAGGTGGCCAGGCTCTATGCCTCCAATTCTGGCTCTGAAATTGACCCGGAAAAGCCTTATGCTGAGTTATGGATGGGAACCCATGATTCTGGACCCTCATTCTTGATTCATCAGGATCTCAATGGCATGTCTATGTCCCTCAAGGACTGGGTTTCAGCCAACTCAAATGAGCTGCTTGGTCATAAAGTCGTCCAAAAGTGGGGCTCTGACCTCCCATTCTTGTTTAAGGTGCTTTCTGTGAGAAAGGCATTGTCGATACAGGCACATCCGGATAAGGACTTGGCCAAAGTTTTGCACAAGTTTATGCCAAGTGCTTACAAGGACGATAATCACAAGCCTGAGATGGCACTTGCTATAACACATTTTCAGGCTCTTTGTGGCTTTATCACTCTCGAGATTGTACAAGTGGTTGGTAGTGAAGTAGCAAACCAAGTGTTTGACAACACAAATGCAGATGGGGAAGATAAAGTCAAGTCTGTTCTGCGTTTGATTTTTACCCAACTCATGTCAGCAACCAAAGAGATTGTAACTACAGCAACAACTAAACTGAAAAATCGTTTACACATGGAAAATCAGGTGAGGCAGTTGACAGAAAAAGAGCAACTGGTTCTGGAATTGGAAAGGCAATATCCAGATGATGTGGGTGTCATGTCTGCTTTCTTTCTCAACTATGTCAAGCTTAATCCAGGAGAAGCACTATACCTCGGAGCAAATGAACCCCATGCCTATATGTTCGGTGACTGCATCGAGTGCATGGCAACTTCTGACAATGTGGTCAGGGCCGGCCTCACTCCCAAGCATCGGGATGGCTGCCCTGAAATCCTGAAAGGAGTTGCCTTAAATTCTTATGTGACAAGGTACCTCCCACCTTTTGACGAATTTGAGGTTGATCGATGCCATCTTCCCCAGGGAGAATCTGTGGAATTTCCTGCAGTCCAAGGTCCTTCCATTTTCGTCGTCACTTTTGGGGAGGGAATCATATATACAAGCAATTTTACAGGAGATATAAATATCACACAAGGAGAGGTTCTTTTTGTGCCTGCAGATACTGAGATTAGCATAACAAGTGCATCTGAGTTGCACATATATAGAGCCGGAGTGAACGGCATGTTCTTTCAAGTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

411

Amino Acids

45.93

Weight (kDa)

5.57

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 17 - 164 1.4e-50 Phosphomannose isomerase type I, catalytic domain
PMI_typeI_hel PF20512 173 - 258 1.6e-13 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 881
Acc65I GGTACC 1 cut(s) 966
AccB1I GGYRCC 1 cut(s) 966
AccIII TCCGGA 1 cut(s) 376
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 114, 390
AcsI RAATTY 3 cut(s) 949, 986, 1031
AfaI GTAC 2 cut(s) 510, 968
AfiI CCNNNNNNNGG 2 cut(s) 307, 909
AgsI TTSAA 1 cut(s) 1226
AjnI CCWGG 3 cut(s) 116, 793, 1014
AluBI AGCT 4 cut(s) 34, 63, 280, 787
AluI AGCT 4 cut(s) 34, 63, 280, 787
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 2 cut(s) 58, 1157
Ama87I CYCGRG 1 cut(s) 500
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 5 cut(s) 97, 114, 390, 888, 892
ApeKI GCWGC 3 cut(s) 63, 280, 918
ApoI RAATTY 3 cut(s) 949, 986, 1031
Asp718I GGTACC 1 cut(s) 966
AspS9I GGNCC 4 cut(s) 98, 200, 888, 1049
AsuC2I CCSGG 2 cut(s) 101, 155
AsuHPI GGTGA 2 cut(s) 697, 857
AvaI CYCGRG 1 cut(s) 500
AvaII GGWCC 2 cut(s) 200, 1049
BalI TGGCCA 2 cut(s) 116, 392
BanI GGYRCC 1 cut(s) 966
BanII GRGCYC 1 cut(s) 314
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 50, 267, 905
BccI CCATC 5 cut(s) 175, 445, 557, 908, 1014
BceAI ACGGC 1 cut(s) 1228
BciT130I CCWGG 3 cut(s) 118, 795, 1016
BcnI CCSGG 2 cut(s) 101, 155
BfmI CTRYAG 3 cut(s) 639, 1038, 1149
BisI GCNGC 3 cut(s) 64, 281, 919
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 3 cut(s) 65, 282, 920
Bme1390I CCNGG 5 cut(s) 101, 118, 155, 795, 1016
Bme18I GGWCC 2 cut(s) 200, 1049
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 4 cut(s) 98, 200, 888, 1049
BmiI GGNNCC 3 cut(s) 187, 202, 968
BmrFI CCNGG 5 cut(s) 101, 118, 155, 795, 1016
BmrI ACTGGG 2 cut(s) 94, 265
BmsI GCATC 4 cut(s) 861, 916, 992, 1187
BmuI ACTGGG 2 cut(s) 94, 265
Bpu10I CCTNAGC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 2 cut(s) 101, 155
Bsa29I ATCGAT 1 cut(s) 1000
BsaJI CCNNGG 4 cut(s) 811, 1014, 1015, 1045
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 909
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 3 cut(s) 89, 260, 717
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 3 cut(s) 118, 795, 1016
BseCI ATCGAT 1 cut(s) 1000
BseDI CCNNGG 4 cut(s) 811, 1014, 1015, 1045
BseGI GGATG 3 cut(s) 186, 373, 919
BseLI CCNNNNNNNGG 2 cut(s) 307, 909
BseMII CTCAG 7 cut(s) 26, 50, 99, 162, 438, 1149, 1173
BseNI ACTGG 3 cut(s) 89, 260, 717
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 3 cut(s) 50, 267, 905
BshFI GGCC 5 cut(s) 99, 116, 392, 890, 894
BshNI GGYRCC 1 cut(s) 966
BshVI ATCGAT 1 cut(s) 1000
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 5 cut(s) 101, 155, 377, 891, 1203
BslFI GGGAC 2 cut(s) 229, 1214
BslI CCNNNNNNNGG 2 cut(s) 307, 909
BsmFI GGGAC 2 cut(s) 229, 1214
BsnI GGCC 5 cut(s) 99, 116, 392, 890, 894
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 223, 997
Bsp1720I GCTNAGC 1 cut(s) 59
BspANI GGCC 5 cut(s) 99, 116, 392, 890, 894
BspCNI CTCAG 7 cut(s) 27, 51, 100, 163, 439, 1150, 1174
BspDI ATCGAT 1 cut(s) 1000
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 187, 202, 968
BspMAI CTGCAG 2 cut(s) 1042, 1153
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 966
BsrFI RCCGGY 1 cut(s) 890
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 3 cut(s) 89, 260, 717
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 4 cut(s) 811, 1014, 1015, 1045
BssMI GATC 2 cut(s) 223, 997
BssT1I CCWWGG 1 cut(s) 1045
Bst2UI CCWGG 3 cut(s) 118, 795, 1016
BstAPI GCANNNNNTGC 1 cut(s) 858
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 2 cut(s) 892, 1149
BstDEI CTNAG 7 cut(s) 35, 59, 108, 171, 447, 1158, 1182
BstF5I GGATG 3 cut(s) 186, 373, 919
BstKTI GATC 2 cut(s) 226, 1000
BstMBI GATC 2 cut(s) 223, 997
BstMWI GCNNNNNNNGC 1 cut(s) 858
BstNI CCWGG 3 cut(s) 118, 795, 1016
BstNSI RCATGY 2 cut(s) 238, 1219
BstSCI CCNGG 5 cut(s) 99, 116, 153, 793, 1014
BstSFI CTRYAG 3 cut(s) 639, 1038, 1149
BstV1I GCAGC 3 cut(s) 50, 267, 905
BstX2I RGATCY 1 cut(s) 223
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 1000
BsuRI GGCC 5 cut(s) 99, 116, 392, 890, 894
BsuTUI ATCGAT 1 cut(s) 1000
BtsCI GGATG 3 cut(s) 186, 373, 919
Cac8I GCNNGC 2 cut(s) 892, 1149
CaiI CAGNNNCTG 2 cut(s) 58, 1157
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 4 cut(s) 98, 200, 888, 1049
ClaI ATCGAT 1 cut(s) 1000
Csp6I GTAC 2 cut(s) 509, 967
CviAII CATG 8 cut(s) 191, 235, 613, 673, 757, 830, 862, 1216
CviQI GTAC 2 cut(s) 509, 967
DdeI CTNAG 7 cut(s) 35, 59, 108, 171, 447, 1158, 1182
DpnI GATC 2 cut(s) 225, 999
DpnII GATC 2 cut(s) 223, 997
DrdI GACNNNNNNGTC 1 cut(s) 881
DseDI GACNNNNNNGTC 1 cut(s) 881
EaeI YGGCCR 2 cut(s) 114, 390
Eco130I CCWWGG 1 cut(s) 1045
Eco24I GRGCYC 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 200, 1049
Eco88I CYCGRG 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 1049
EcoRII CCWGG 3 cut(s) 116, 793, 1014
EcoT14I CCWWGG 1 cut(s) 1045
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 1045
FaeI CATG 8 cut(s) 194, 238, 616, 676, 760, 833, 865, 1219
FaqI GGGAC 2 cut(s) 229, 1214
FatI CATG 8 cut(s) 190, 234, 612, 672, 756, 829, 861, 1215
Fnu4HI GCNGC 3 cut(s) 64, 281, 919
FokI GGATG 3 cut(s) 193, 360, 926
FriOI GRGCYC 1 cut(s) 314
FseI GGCCGGCC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 64, 281, 919
GluI GCNGC 3 cut(s) 64, 281, 919
HaeIII GGCC 5 cut(s) 99, 116, 392, 890, 894
HapII CCGG 5 cut(s) 101, 155, 377, 891, 1203
Hin1II CATG 8 cut(s) 194, 238, 616, 676, 760, 833, 865, 1219
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 6 cut(s) 16, 104, 194, 214, 1022, 1083
HpaII CCGG 5 cut(s) 101, 155, 377, 891, 1203
HphI GGTGA 2 cut(s) 697, 857
Hpy166II GTNNAC 3 cut(s) 668, 696, 1210
Hpy188I TCNGA 8 cut(s) 54, 75, 109, 145, 316, 815, 874, 1183
Hpy8I GTNNAC 3 cut(s) 668, 696, 1210
Hpy99I CGWCG 1 cut(s) 1067
HpyAV CCTTC 1 cut(s) 1062
HpyCH4V TGCA 8 cut(s) 403, 560, 852, 861, 1040, 1151, 1178, 1189
HpyF10VI GCNNNNNNNGC 1 cut(s) 858
HpyF3I CTNAG 7 cut(s) 35, 59, 108, 171, 447, 1158, 1182
Hsp92II CATG 8 cut(s) 194, 238, 616, 676, 760, 833, 865, 1219
Kpn2I TCCGGA 1 cut(s) 376
KpnI GGTACC 1 cut(s) 970
KroI GCCGGC 1 cut(s) 890
KroNI GCCGGC 1 cut(s) 892
Kzo9I GATC 2 cut(s) 223, 997
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 3 cut(s) 50, 267, 905
LweI GCATC 4 cut(s) 861, 916, 992, 1187
MaeIII GTNAC 4 cut(s) 634, 845, 958, 1066
MalI GATC 2 cut(s) 225, 999
MboI GATC 2 cut(s) 223, 997
MboII GAAGA 3 cut(s) 103, 581, 1001
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 2 cut(s) 116, 392
MluCI AATT 7 cut(s) 133, 147, 722, 949, 986, 1031, 1099
MluNI TGGCCA 2 cut(s) 116, 392
MlyI GAGTC 1 cut(s) 98
Mox20I TGGCCA 2 cut(s) 116, 392
MroI TCCGGA 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 890
MscI TGGCCA 2 cut(s) 116, 392
MseI TTAA 3 cut(s) 333, 789, 947
MslI CAYNNNNRTG 2 cut(s) 239, 912
Msp20I TGGCCA 2 cut(s) 116, 392
MspI CCGG 5 cut(s) 101, 155, 377, 891, 1203
MspR9I CCNGG 5 cut(s) 101, 118, 155, 795, 1016
MvaI CCWGG 3 cut(s) 118, 795, 1016
MwoI GCNNNNNNNGC 1 cut(s) 858
NaeI GCCGGC 1 cut(s) 892
NciI CCSGG 2 cut(s) 101, 155
NdeII GATC 2 cut(s) 223, 997
NgoMIV GCCGGC 1 cut(s) 890
NlaIII CATG 8 cut(s) 194, 238, 616, 676, 760, 833, 865, 1219
NlaIV GGNNCC 3 cut(s) 187, 202, 968
NmuCI GTSAC 3 cut(s) 845, 958, 1066
NspI RCATGY 2 cut(s) 238, 1219
PaeR7I CTCGAG 1 cut(s) 500
PasI CCCWGGG 1 cut(s) 1015
PdiI GCCGGC 1 cut(s) 892
PfeI GAWTC 5 cut(s) 16, 194, 214, 1022, 1083
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 3 cut(s) 65, 282, 920
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 1049
Psp5II RGGWCCY 1 cut(s) 1049
Psp6I CCWGG 3 cut(s) 116, 793, 1014
PspGI CCWGG 3 cut(s) 116, 793, 1014
PspN4I GGNNCC 3 cut(s) 187, 202, 968
PspPI GGNCC 4 cut(s) 98, 200, 888, 1049
PspPPI RGGWCCY 1 cut(s) 1049
PstI CTGCAG 2 cut(s) 1042, 1153
PstNI CAGNNNCTG 2 cut(s) 58, 1157
PsuI RGATCY 1 cut(s) 223
RigI GGCCGGCC 1 cut(s) 894
RsaI GTAC 2 cut(s) 510, 968
RsaNI GTAC 2 cut(s) 509, 967
RseI CAYNNNNRTG 2 cut(s) 239, 912
SaqAI TTAA 3 cut(s) 333, 789, 947
SatI GCNGC 3 cut(s) 64, 281, 919
Sau3AI GATC 2 cut(s) 223, 997
Sau96I GGNCC 4 cut(s) 98, 200, 888, 1049
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 5 cut(s) 101, 118, 155, 795, 1016
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 4 cut(s) 861, 916, 992, 1187
SfcI CTRYAG 3 cut(s) 639, 1038, 1149
Sfr274I CTCGAG 1 cut(s) 500
SinI GGWCC 2 cut(s) 200, 1049
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 2 cut(s) 239, 912
SmlI CTYRAG 2 cut(s) 248, 500
SmoI CTYRAG 2 cut(s) 248, 500
Sse9I AATT 7 cut(s) 133, 147, 722, 949, 986, 1031, 1099
StyD4I CCNGG 5 cut(s) 99, 116, 153, 793, 1014
StyI CCWWGG 1 cut(s) 1045
TaqI TCGA 4 cut(s) 362, 501, 855, 1000
TasI AATT 7 cut(s) 133, 147, 722, 949, 986, 1031, 1099
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 5 cut(s) 16, 194, 214, 1022, 1083
Tru1I TTAA 3 cut(s) 333, 789, 947
Tru9I TTAA 3 cut(s) 333, 789, 947
TseFI GTSAC 3 cut(s) 845, 958, 1066
TseI GCWGC 3 cut(s) 63, 280, 918
Tsp45I GTSAC 3 cut(s) 845, 958, 1066
TspDTI ATGAA 3 cut(s) 44, 206, 837
VpaK11BI GGWCC 2 cut(s) 200, 1049
XapI RAATTY 3 cut(s) 949, 986, 1031
XceI RCATGY 2 cut(s) 238, 1219
XhoI CTCGAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.