Rorug07G0102300

Belongs to the mannose-6-phosphate isomerase type 1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
8080423 .. 8080789
367 bp
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UTR
Exon/CDS
Intron
Rorug07G0102300.1

Sequence Viewer

Length: 210 bp
ATGGACGCCATTGACTCAGTTGTGGATCCTCTCAGAGAGTTCGCTAAGGACAGCGCTCGGCTCGTCAAGAGGTGCCACAAGCCTGATCGCAAAGAATTCTCAAAGGTGGCGTTGCGTACAGCGATCGGGTTTGTTGTGATGGGATTCGTTGGGTTTTTCGTGAAGCTCATCTTCATTCCCATCAACAACATCATCGTCGGATCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.72

Weight (kDa)

9.74

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 13 - 65 3.3e-14 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AclWI GGATC 3 cut(s) 20, 33, 208
AcsI RAATTY 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 55
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 3 cut(s) 20, 33, 208
Aor51HI AGCGCT 1 cut(s) 55
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 72
BccI CCATC 2 cut(s) 133, 188
BfoI RGCGCY 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 27, 74
Bpu10I CCTNAGC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 6
BseMII CTCAG 2 cut(s) 30, 46
Bsh1285I CGRYCG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 126
Bsp143I GATC 4 cut(s) 25, 85, 123, 200
BspCNI CTCAG 2 cut(s) 29, 45
BspLI GGNNCC 2 cut(s) 27, 74
BspPI GGATC 3 cut(s) 20, 33, 208
BspT107I GGYRCC 1 cut(s) 72
BssMI GATC 4 cut(s) 25, 85, 123, 200
BssNI GRCGYC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 16, 32, 45
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 28, 88, 126, 203
BstMBI GATC 4 cut(s) 25, 85, 123, 200
BstMCI CGRYCG 1 cut(s) 126
BstX2I RGATCY 2 cut(s) 25, 200
BstYI RGATCY 2 cut(s) 25, 200
CfoI GCGC 1 cut(s) 56
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 3 cut(s) 61, 82, 166
CviKI_1 RGCY 3 cut(s) 61, 82, 166
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 3 cut(s) 16, 32, 45
DpnI GATC 4 cut(s) 27, 87, 125, 202
DpnII GATC 4 cut(s) 25, 85, 123, 200
Eco47III AGCGCT 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 95
FalI AAGNNNNNCTT 2 cut(s) 155, 187
GlaI GCGC 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 57
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 2 cut(s) 14, 144
Hpy188I TCNGA 2 cut(s) 35, 200
Hpy188III TCNNGA 2 cut(s) 67, 160
Hpy99I CGWCG 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 16, 32, 45
Hsp92I GRCGYC 1 cut(s) 6
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 4 cut(s) 25, 85, 123, 200
LpnPI CCDG 1 cut(s) 96
MalI GATC 4 cut(s) 27, 87, 125, 202
MboI GATC 4 cut(s) 25, 85, 123, 200
MboII GAAGA 1 cut(s) 163
MflI RGATCY 2 cut(s) 25, 200
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 2 cut(s) 39, 63
NdeII GATC 4 cut(s) 25, 85, 123, 200
NlaIV GGNNCC 2 cut(s) 27, 74
NmeAIII GCCGAG 1 cut(s) 37
PfeI GAWTC 1 cut(s) 144
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 27, 74
PsuI RGATCY 2 cut(s) 25, 200
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 25, 85, 123, 200
SchI GAGTC 1 cut(s) 8
SetI ASST 3 cut(s) 74, 108, 168
SgeI CNNG 7 cut(s) 69, 74, 79, 91, 95, 139, 172
Sse9I AATT 1 cut(s) 95
TasI AATT 1 cut(s) 95
TfiI GAWTC 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 163
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.