Rh7DG334600

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001016
Physical Location & Seq
Reverse (-)
43411974 .. 43413404
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG334600.1

Sequence Viewer

Length: 1149 bp
ATGGAGATGCAACAACCAAAGCAGAGGCAGAGGAGTGTTCAGAGGCTAAGATGCTCTGTCATGAACTACGACTGGGGTAAGAAAGGCCGAGACTCTGTGGTGGGCAGGTTGTGTGCCTCCAATTCTCATTCTGAAATCGACGTAGAAAAGCCTTACGCTGAAATGTGGATGGGAACACATGACTCTGGACCCTCCTTTTTGATTGATCAGGATCTGAATAATAATAATAGCACCACTACTGGGTCATCTCCGTCTCTCAGAGACTGGGTTTCTAACAACCCTAATGACATGCTCGGTCACAAGATTGTCCAAAAATGGGGCTCCTCTGATCTGCCTTTCTTGTTTAAGGTGCAATCCGTGGCAAAGGCACTGTCAATACAGGCACACCCAGACAAGGAATTGGCCAAGGCTTTGCACAAGTCTATGCCAGATATTTACAAGGATGATAATTATAAGCCTGAGATGGCGCTGGCCTTGACACATTTTCAGGCTCTTTGTGGTTTTATCACTCTTGAGGAGCTTAAGAAGGTGATTGGTAATGTCCCTGAGATTGTAGAACTGTTGTCAACTAACAAGGAAATTATAACCACAGTAACAACTAAATTGAAGAGTCGTTTACAGACGGAAAGCCAGGTAAGGCAGCTGACAGAAAAGGAGCAGCTAGTGTTTCAATTGGAAAAGCAATATCCGAACGATGTGGGTGTGATATCTGCATTCTTTCTTAACCATCTGAAGCTTAATCCTGGAGAAGCATTATGCCTTGGAGCAAATGAACCCCATGCCTATATATCTGGGGATTGGATCGAGTGCATGGCAACCTCAGACAACGTAGTTAGGGCTGGCCTTACTCCCAAGCATCGAGATATCAAAACCCTTTGTTCTATGCTCACATATAAGCAGGGTTTCCCTGAAATCTTGCGAGGAGTTGCTGTGAATCCTCATGTAACAAGGTACACACCGCCTTTTGAAGAATTTGAGGTTGATTGGATCCATCTTCCCCAGGGAGAATCAACAGAGTTTCCTGCAGTACCTGGTCCTTCCATTTTTGTGGTCCCTTTTGGAAGGGAACCATATGTACGAGTAATGGAGATCATGCAATCATCCAAGGAGATGTTCTGTTTGCACCTGCACACACTGAGATTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

382

Amino Acids

43.24

Weight (kDa)

6.36

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 13 - 168 1.6e-43 Phosphomannose isomerase type I, catalytic domain
PMI_typeI_hel PF20512 186 - 241 2e-08 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 453, 584
AarI CACCTGC 1 cut(s) 1134
Acc36I ACCTGC 2 cut(s) 96, 1134
AciI CCGC 1 cut(s) 959
AclWI GGATC 4 cut(s) 219, 809, 982, 995
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 971
AcuI CTGAAG 1 cut(s) 752
AfaI GTAC 3 cut(s) 953, 1029, 1077
AfiI CCNNNNNNNGG 3 cut(s) 240, 316, 394
AflII CTTAAG 1 cut(s) 521
AgsI TTSAA 3 cut(s) 607, 671, 968
AjnI CCWGG 4 cut(s) 630, 742, 999, 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AluBI AGCT 4 cut(s) 520, 643, 661, 736
AluI AGCT 4 cut(s) 520, 643, 661, 736
Alw26I GTCTC 3 cut(s) 84, 255, 258
AlwI GGATC 4 cut(s) 219, 809, 982, 995
AlwNI CAGNNNCTG 3 cut(s) 214, 264, 1031
AoxI GGCC 4 cut(s) 85, 402, 471, 841
ApeKI GCWGC 2 cut(s) 640, 658
ApoI RAATTY 1 cut(s) 971
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 3 cut(s) 188, 1034, 1051
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 3 cut(s) 188, 1034, 1051
BalI TGGCCA 1 cut(s) 404
BamHI GGATCC 1 cut(s) 987
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 652, 670
BccI CCATC 4 cut(s) 163, 457, 735, 999
BciT130I CCWGG 4 cut(s) 632, 744, 1001, 1032
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 84, 255, 258
BfaI CTAG 1 cut(s) 662
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 470
BfrI CTTAAG 1 cut(s) 521
BfuAI ACCTGC 2 cut(s) 96, 1134
BisI GCNGC 2 cut(s) 641, 659
BlsI GCNGC 2 cut(s) 642, 660
Bme1390I CCNGG 4 cut(s) 632, 744, 1001, 1032
Bme18I GGWCC 3 cut(s) 188, 1034, 1051
BmgT120I GGNCC 3 cut(s) 188, 1034, 1051
BmiI GGNNCC 5 cut(s) 190, 322, 989, 1053, 1068
BmrFI CCNGG 4 cut(s) 632, 744, 1001, 1032
BmrI ACTGGG 3 cut(s) 82, 249, 274
BmsI GCATC 2 cut(s) 41, 865
BmuI ACTGGG 3 cut(s) 82, 249, 274
BpmI CTGGAG 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 6 cut(s) 357, 405, 760, 999, 1000, 1104
BsaXI ACNNNNNCTCC 2 cut(s) 915, 945
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 316, 394
Bse1I ACTGG 3 cut(s) 77, 244, 269
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 4 cut(s) 632, 744, 1001, 1032
BseDI CCNNGG 6 cut(s) 357, 405, 760, 999, 1000, 1104
BseGI GGATG 3 cut(s) 174, 448, 1100
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 240, 316, 394
BseMII CTCAG 5 cut(s) 271, 450, 537, 834, 1127
BseNI ACTGG 3 cut(s) 77, 244, 269
BseRI GAGGAG 4 cut(s) 46, 313, 530, 936
BseXI GCAGC 2 cut(s) 652, 670
BsgI GTGCAG 1 cut(s) 1112
BshFI GGCC 4 cut(s) 87, 404, 473, 843
BslFI GGGAC 2 cut(s) 527, 1037
BslI CCNNNNNNNGG 3 cut(s) 240, 316, 394
BsmAI GTCTC 3 cut(s) 84, 255, 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 2 cut(s) 527, 1037
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 4 cut(s) 87, 404, 473, 843
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
BspACI CCGC 1 cut(s) 959
BspANI GGCC 4 cut(s) 87, 404, 473, 843
BspCNI CTCAG 5 cut(s) 270, 451, 538, 833, 1128
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 5 cut(s) 190, 322, 989, 1053, 1068
BspMAI CTGCAG 1 cut(s) 1027
BspMI ACCTGC 2 cut(s) 96, 1134
BspPI GGATC 4 cut(s) 219, 809, 982, 995
BspTI CTTAAG 1 cut(s) 521
BsrI ACTGG 3 cut(s) 77, 244, 269
BssECI CCNNGG 6 cut(s) 357, 405, 760, 999, 1000, 1104
BssMI GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
BssT1I CCWWGG 3 cut(s) 405, 760, 1104
Bst2UI CCWGG 4 cut(s) 632, 744, 1001, 1032
Bst4CI ACNGT 3 cut(s) 372, 561, 592
Bst6I CTCTTC 1 cut(s) 602
BstAFI CTTAAG 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 471, 841
BstDEI CTNAG 6 cut(s) 47, 257, 459, 546, 820, 1136
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 174, 448, 1100
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 6 cut(s) 208, 214, 331, 804, 990, 1092
BstMAI GTCTC 3 cut(s) 84, 255, 258
BstMBI GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
BstNI CCWGG 4 cut(s) 632, 744, 1001, 1032
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 4 cut(s) 630, 742, 999, 1030
BstSFI CTRYAG 1 cut(s) 1023
BstV1I GCAGC 2 cut(s) 652, 670
BstX2I RGATCY 2 cut(s) 211, 987
BstXI CCANNNNNNTGG 1 cut(s) 1048
BstYI RGATCY 2 cut(s) 211, 987
BsuRI GGCC 4 cut(s) 87, 404, 473, 843
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 174, 448, 1100
BtsIMutI CAGTG 2 cut(s) 368, 1133
BveI ACCTGC 2 cut(s) 96, 1134
Cac8I GCNNGC 2 cut(s) 471, 841
CaiI CAGNNNCTG 3 cut(s) 214, 264, 1031
CciI TCATGA 1 cut(s) 60
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 3 cut(s) 188, 1034, 1051
CsiI ACCWGGT 1 cut(s) 1030
Csp6I GTAC 3 cut(s) 952, 1028, 1076
CviAII CATG 7 cut(s) 61, 179, 289, 779, 811, 941, 1093
CviQI GTAC 3 cut(s) 952, 1028, 1076
DdeI CTNAG 6 cut(s) 47, 257, 459, 546, 820, 1136
DpnI GATC 6 cut(s) 207, 213, 330, 803, 989, 1091
DpnII GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
Eco130I CCWWGG 3 cut(s) 405, 760, 1104
Eco24I GRGCYC 1 cut(s) 323
Eco32I GATATC 2 cut(s) 708, 865
Eco47I GGWCC 3 cut(s) 188, 1034, 1051
Eco57I CTGAAG 1 cut(s) 752
EcoRII CCWGG 4 cut(s) 630, 742, 999, 1030
EcoRV GATATC 2 cut(s) 708, 865
EcoT14I CCWWGG 3 cut(s) 405, 760, 1104
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 3 cut(s) 405, 760, 1104
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 7 cut(s) 64, 182, 292, 782, 814, 944, 1096
FaqI GGGAC 2 cut(s) 527, 1037
FatI CATG 7 cut(s) 60, 178, 288, 778, 810, 940, 1092
FauNDI CATATG 1 cut(s) 1072
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 641, 659
FokI GGATG 3 cut(s) 181, 455, 1087
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 641, 659
FspBI CTAG 1 cut(s) 662
GlaI GCGC 1 cut(s) 468
GluI GCNGC 2 cut(s) 641, 659
GsuI CTGGAG 1 cut(s) 765
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 4 cut(s) 87, 404, 473, 843
HhaI GCGC 1 cut(s) 469
Hin1II CATG 7 cut(s) 64, 182, 292, 782, 814, 944, 1096
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 5 cut(s) 92, 182, 610, 934, 1007
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 3 cut(s) 567, 617, 954
Hpy188I TCNGA 8 cut(s) 42, 133, 216, 260, 328, 690, 732, 823
Hpy188III TCNNGA 5 cut(s) 61, 186, 209, 512, 860
Hpy8I GTNNAC 3 cut(s) 567, 617, 954
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 520, 1047, 1056
HpyCH4III ACNGT 3 cut(s) 372, 561, 592
HpyCH4IV ACGT 2 cut(s) 141, 828
HpyCH4V TGCA 9 cut(s) 10, 352, 415, 713, 810, 1025, 1096, 1123, 1129
HpyF3I CTNAG 6 cut(s) 47, 257, 459, 546, 820, 1136
HpySE526I ACGT 2 cut(s) 141, 828
Hsp92II CATG 7 cut(s) 64, 182, 292, 782, 814, 944, 1096
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
LmnI GCTCC 4 cut(s) 326, 517, 655, 764
Lsp1109I GCAGC 2 cut(s) 652, 670
LweI GCATC 2 cut(s) 41, 865
MabI ACCWGGT 1 cut(s) 1030
MaeI CTAG 1 cut(s) 662
MaeII ACGT 2 cut(s) 141, 828
MaeIII GTNAC 3 cut(s) 296, 592, 943
MalI GATC 6 cut(s) 207, 213, 330, 803, 989, 1091
MboI GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
MboII GAAGA 3 cut(s) 619, 980, 986
MfeI CAATTG 1 cut(s) 671
MflI RGATCY 2 cut(s) 211, 987
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 7 cut(s) 121, 398, 448, 579, 602, 671, 971
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 3 cut(s) 86, 176, 619
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 4 cut(s) 345, 522, 723, 738
MslI CAYNNNNRTG 1 cut(s) 1046
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 643
MspCI CTTAAG 1 cut(s) 521
MspR9I CCNGG 4 cut(s) 632, 744, 1001, 1032
MunI CAATTG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 4 cut(s) 632, 744, 1001, 1032
NdeI CATATG 1 cut(s) 1072
NdeII GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
NlaIII CATG 7 cut(s) 64, 182, 292, 782, 814, 944, 1096
NlaIV GGNNCC 5 cut(s) 190, 322, 989, 1053, 1068
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 296
NspI RCATGY 1 cut(s) 292
PagI TCATGA 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 1134
PasI CCCWGGG 1 cut(s) 1000
PctI GAATGC 1 cut(s) 713
PfeI GAWTC 2 cut(s) 934, 1007
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 2 cut(s) 642, 660
PleI GAGTC 3 cut(s) 86, 176, 618
PpsI GAGTC 3 cut(s) 86, 176, 618
PsiI TTATAA 2 cut(s) 453, 584
Psp6I CCWGG 4 cut(s) 630, 742, 999, 1030
PspGI CCWGG 4 cut(s) 630, 742, 999, 1030
PspN4I GGNNCC 5 cut(s) 190, 322, 989, 1053, 1068
PspPI GGNCC 3 cut(s) 188, 1034, 1051
PsrI GAACNNNNNNTAC 2 cut(s) 1059, 1091
PstI CTGCAG 1 cut(s) 1027
PstNI CAGNNNCTG 3 cut(s) 214, 264, 1031
PsuI RGATCY 2 cut(s) 211, 987
PvuII CAGCTG 1 cut(s) 643
RsaI GTAC 3 cut(s) 953, 1029, 1077
RsaNI GTAC 3 cut(s) 952, 1028, 1076
RseI CAYNNNNRTG 1 cut(s) 1046
SaqAI TTAA 4 cut(s) 345, 522, 723, 738
SatI GCNGC 2 cut(s) 641, 659
Sau3AI GATC 6 cut(s) 205, 211, 328, 801, 987, 1089
Sau96I GGNCC 3 cut(s) 188, 1034, 1051
SchI GAGTC 3 cut(s) 86, 176, 619
ScrFI CCNGG 4 cut(s) 632, 744, 1001, 1032
SduI GDGCHC 1 cut(s) 323
SexAI ACCWGGT 1 cut(s) 1030
SfaNI GCATC 2 cut(s) 41, 865
SfcI CTRYAG 1 cut(s) 1023
SinI GGWCC 3 cut(s) 188, 1034, 1051
SmiMI CAYNNNNRTG 1 cut(s) 1046
SmlI CTYRAG 2 cut(s) 512, 521
SmoI CTYRAG 2 cut(s) 512, 521
Sse9I AATT 7 cut(s) 121, 398, 448, 579, 602, 671, 971
SsiI CCGC 1 cut(s) 959
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 4 cut(s) 630, 742, 999, 1030
StyI CCWWGG 3 cut(s) 405, 760, 1104
TaaI ACNGT 3 cut(s) 372, 561, 592
TaiI ACGT 2 cut(s) 144, 831
TaqI TCGA 3 cut(s) 138, 804, 859
TaqII GACCGA 1 cut(s) 284
TasI AATT 7 cut(s) 121, 398, 448, 579, 602, 671, 971
TfiI GAWTC 2 cut(s) 934, 1007
Tru1I TTAA 4 cut(s) 345, 522, 723, 738
Tru9I TTAA 4 cut(s) 345, 522, 723, 738
TscAI CASTG 2 cut(s) 375, 1140
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 640, 658
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 77, 786
TspGWI ACGGA 3 cut(s) 240, 346, 638
TspRI CASTG 2 cut(s) 375, 1140
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 3 cut(s) 188, 1034, 1051
XapI RAATTY 1 cut(s) 971
XceI RCATGY 1 cut(s) 292
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.