RLG00000010762

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001016
Physical Location & Seq
Reverse (-)
4193613 .. 4194852
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010762

Sequence Viewer

Length: 921 bp
ATGGAGATGGAGAGGCAGAGGAGTGTTCAGAAGCTGAAATGCACTGTCCAGAACTATGAATGGGGAAAGAAAGGCCTAGATTCTGAGGTAGCAAGGCTTTGTGCCTCCAACTCTGGTAGTAAAATTGACCCACAAAAGCCTTACGCCGAGTTTTGGATGGGAACCCATCAATCTAGACCTTCCTTTTTGATTGATCCGAATAACACTACGTCGTCGTTGTCTCTCAAAGACTGGATCTCTGACAAACCAGATGAGATTCTTGGCCACAGGGTCATCCAAAAATGGGGCTCTGACCTGCCTTTCTTGTTTAAGGTGCTTTCTGTGGCGAAGGCATTGTCGATACAGGCTCACCCAGATAAGGAATTGGCCAAGGCTTTGCACAAGTCTATGCCTGATCTTTACAAGGACGATAATCACAAGCCGGAGATGGCGCTCGCTACAACACATTTTCAAGCTCTTTGTGGTTTCATCGCTTTTCAGGAGCTTAACAATGTACCCGAGATTGTGCAAGTGGTTGGAAGTGAAGTTGCAAACCAAGTGCTTCAGACCGATGACGAAGATAAAGTCAAGTCTGTTCTGCGATCAATTTTCACCCAATTAATGTCGAAAGCCAGGCAGTTGATAGACAAGGAGCAGCTAGTGTTGCACTTGGAAGAGCAATATTCAGAAGAGGACGTGGGTGTGATATCTGCTTTCTTTCTCAACCATATGAAGCTTAATCCTGGAGAAGCATTGTGCCTCGGAGCAAATGAACCTCATGCCTATGTATCCGGGGACTGCATTGACTGCATGGCGACCTCGGACAACGTAGTCAGGGCTGGCCTTACTCCTAAGCATCGAGATGTTAAGACCCTTTGTTCTATGCTCACATATAAGCAGGGTTTCCCTGAAATCATGCGAGGAGTTGCTATGAATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

307

Amino Acids

34.35

Weight (kDa)

5.94

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 9 - 156 5.5e-49 Phosphomannose isomerase type I, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 809
Acc36I ACCTGC 1 cut(s) 303
AclWI GGATC 2 cut(s) 188, 242
AcoI YGGCCR 2 cut(s) 262, 366
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 3 cut(s) 153, 283, 358
AgsI TTSAA 1 cut(s) 452
AjiI CACGTC 1 cut(s) 676
AjnI CCWGG 2 cut(s) 611, 721
AluBI AGCT 5 cut(s) 34, 455, 484, 637, 715
AluI AGCT 5 cut(s) 34, 455, 484, 637, 715
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 2 cut(s) 188, 242
AlwNI CAGNNNCTG 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 4 cut(s) 73, 262, 366, 820
ApeKI GCWGC 1 cut(s) 634
ArsI GACNNNNNNTTYG 4 cut(s) 320, 352, 549, 581
AseI ATTAAT 1 cut(s) 599
AspLEI GCGC 1 cut(s) 433
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 2 cut(s) 341, 583
AvaI CYCGRG 1 cut(s) 497
BalI TGGCCA 2 cut(s) 264, 368
BanII GRGCYC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 646
BccI CCATC 3 cut(s) 151, 174, 421
BciT130I CCWGG 2 cut(s) 613, 723
BciVI GTATCC 1 cut(s) 778
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 77, 174, 638
BfoI RGCGCY 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 303
BfuI GTATCC 1 cut(s) 778
BisI GCNGC 1 cut(s) 635
BlsI GCNGC 1 cut(s) 636
Bme1390I CCNGG 3 cut(s) 613, 723, 772
BmeT110I CYCGRG 1 cut(s) 497
BmgBI CACGTC 1 cut(s) 676
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 3 cut(s) 613, 723, 772
BmsI GCATC 1 cut(s) 844
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 831
BpuMI CCSGG 1 cut(s) 772
BsaJI CCNNGG 4 cut(s) 369, 739, 771, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 283, 358
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 613, 723
BseDI CCNNGG 4 cut(s) 369, 739, 771, 798
BseGI GGATG 2 cut(s) 162, 273
BseLI CCNNNNNNNGG 3 cut(s) 153, 283, 358
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 34, 915
BseXI GCAGC 1 cut(s) 646
BshFI GGCC 4 cut(s) 75, 264, 368, 822
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 2 cut(s) 422, 771
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 3 cut(s) 153, 283, 358
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 4 cut(s) 75, 264, 368, 822
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 4 cut(s) 193, 234, 394, 581
BspANI GGCC 4 cut(s) 75, 264, 368, 822
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 2 cut(s) 188, 242
BspQI GCTCTTC 1 cut(s) 648
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 4 cut(s) 369, 739, 771, 798
BssMI GATC 4 cut(s) 193, 234, 394, 581
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 613, 723
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 648, 663
BstAPI GCANNNNNTGC 1 cut(s) 786
BstC8I GCNNGC 2 cut(s) 435, 820
BstDEI CTNAG 2 cut(s) 84, 831
BstF5I GGATG 2 cut(s) 162, 273
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 4 cut(s) 196, 237, 397, 584
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 4 cut(s) 193, 234, 394, 581
BstMWI GCNNNNNNNGC 2 cut(s) 643, 786
BstNI CCWGG 2 cut(s) 613, 723
BstSCI CCNGG 3 cut(s) 611, 721, 770
BstV1I GCAGC 1 cut(s) 646
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 4 cut(s) 75, 264, 368, 822
BtgZI GCGATG 1 cut(s) 454
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 162, 273
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 435, 820
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 494
CviAII CATG 3 cut(s) 758, 790, 895
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 2 cut(s) 84, 831
DpnI GATC 4 cut(s) 195, 236, 396, 583
DpnII GATC 4 cut(s) 193, 234, 394, 581
DrdI GACNNNNNNGTC 1 cut(s) 809
DseDI GACNNNNNNGTC 1 cut(s) 809
EaeI YGGCCR 2 cut(s) 262, 366
Eam1104I CTCTTC 2 cut(s) 648, 663
EarI CTCTTC 2 cut(s) 648, 663
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 290
Eco32I GATATC 1 cut(s) 687
Eco57I CTGAAG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 611, 721
EcoRV GATATC 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 761, 793, 898
FaqI GGGAC 1 cut(s) 788
FatI CATG 3 cut(s) 757, 789, 894
FauNDI CATATG 1 cut(s) 708
Fnu4HI GCNGC 1 cut(s) 635
FokI GGATG 2 cut(s) 169, 260
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 635
FspBI CTAG 3 cut(s) 77, 174, 638
GlaI GCGC 1 cut(s) 432
GluI GCNGC 1 cut(s) 635
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 4 cut(s) 75, 264, 368, 822
HapII CCGG 2 cut(s) 422, 771
HhaI GCGC 1 cut(s) 433
Hin1II CATG 3 cut(s) 761, 793, 898
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 3 cut(s) 80, 256, 913
HpaII CCGG 2 cut(s) 422, 771
HphI GGTGA 2 cut(s) 341, 583
Hpy188I TCNGA 9 cut(s) 30, 85, 198, 241, 292, 546, 667, 743, 802
Hpy188III TCNNGA 4 cut(s) 49, 174, 479, 839
Hpy99I CGWCG 2 cut(s) 214, 217
HpyAV CCTTC 2 cut(s) 189, 322
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 3 cut(s) 209, 675, 807
HpyCH4V TGCA 7 cut(s) 42, 379, 508, 530, 646, 780, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 643, 786
HpyF3I CTNAG 2 cut(s) 84, 831
HpySE526I ACGT 3 cut(s) 209, 675, 807
Hsp92II CATG 3 cut(s) 761, 793, 898
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 4 cut(s) 193, 234, 394, 581
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 3 cut(s) 481, 631, 743
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 1 cut(s) 844
MaeI CTAG 3 cut(s) 77, 174, 638
MaeII ACGT 3 cut(s) 209, 675, 807
MalI GATC 4 cut(s) 195, 236, 396, 583
MboI GATC 4 cut(s) 193, 234, 394, 581
MboII GAAGA 3 cut(s) 569, 665, 680
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 2 cut(s) 264, 368
MluCI AATT 4 cut(s) 123, 362, 585, 596
MluNI TGGCCA 2 cut(s) 264, 368
MmeI TCCRAC 2 cut(s) 132, 496
MnlI CCTC 9 cut(s) 6, 12, 79, 115, 664, 749, 765, 808, 893
Mox20I TGGCCA 2 cut(s) 264, 368
MscI TGGCCA 2 cut(s) 264, 368
MseI TTAA 6 cut(s) 309, 486, 599, 717, 846, 919
MslI CAYNNNNRTG 2 cut(s) 762, 840
Msp20I TGGCCA 2 cut(s) 264, 368
MspI CCGG 2 cut(s) 422, 771
MspR9I CCNGG 3 cut(s) 613, 723, 772
MvaI CCWGG 2 cut(s) 613, 723
MwoI GCNNNNNNNGC 2 cut(s) 643, 786
NciI CCSGG 1 cut(s) 772
NdeI CATATG 1 cut(s) 708
NdeII GATC 4 cut(s) 193, 234, 394, 581
NlaIII CATG 3 cut(s) 761, 793, 898
NlaIV GGNNCC 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 172
PceI AGGCCT 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 648
PfeI GAWTC 3 cut(s) 80, 256, 913
PfoI TCCNGGA 1 cut(s) 721
PkrI GCNGC 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 611, 721
PspGI CCWGG 2 cut(s) 611, 721
PspN4I GGNNCC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 762, 840
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 6 cut(s) 309, 486, 599, 717, 846, 919
SatI GCNGC 1 cut(s) 635
Sau3AI GATC 4 cut(s) 193, 234, 394, 581
ScrFI CCNGG 3 cut(s) 613, 723, 772
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 1 cut(s) 844
SmiMI CAYNNNNRTG 2 cut(s) 762, 840
Sse9I AATT 4 cut(s) 123, 362, 585, 596
SseBI AGGCCT 1 cut(s) 75
SspI AATATT 1 cut(s) 662
SspMI CTAG 3 cut(s) 77, 174, 638
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 611, 721, 770
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 3 cut(s) 212, 678, 810
TaqI TCGA 3 cut(s) 338, 605, 838
TaqII GACCGA 1 cut(s) 563
TasI AATT 4 cut(s) 123, 362, 585, 596
TfiI GAWTC 3 cut(s) 80, 256, 913
Tru1I TTAA 6 cut(s) 309, 486, 599, 717, 846, 919
Tru9I TTAA 6 cut(s) 309, 486, 599, 717, 846, 919
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 634
TspDTI ATGAA 4 cut(s) 72, 457, 725, 765
TspRI CASTG 1 cut(s) 49
VspI ATTAAT 1 cut(s) 599
XbaI TCTAGA 1 cut(s) 173
XspI CTAG 3 cut(s) 77, 174, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.