Rmu_sc0023725.1_g000002

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023725.1
OG0001016
Physical Location & Seq
Forward (+)
4752 .. 5349
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023725.1_g000002.1.cds

Sequence Viewer

Length: 510 bp
atggagccgtggcagaacaccatgaagaagaagcggaggcccgtccggctccgctgctccgtcaagaattacgactggggcattctcggccacaattccaaggtcgccaggctcttcgctctcaattccgggtcggacatcgacccggccaagccctacgccgagttctggatcgggactcatgaatccgggccgtcctacgccgagtccgggtcggagcagcccctcagcctcaagtcctggatcgccgaggatccgagtgttctcggcgagaaggttctggacaagtggggcgccgatcttccgttcttgtgcaaggtactttcggttcagaaggctctgtcgatacaggctcatccggataaagagatggctagagtgttgcacaagttgcaccccagtgtttacaaggatgataatcacaagcctgaagtggcattggcgctgacggagttcgaggctctttgcgggtttattagtctcaaggtaagacagggatggtggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00970 ko01100 map00970 map01100
Pfam Domains
Protein Families
tRNA-synt_1c tRNA-synt_1c_C tRNA_synt_1c_R1 tRNA_synt_1c_R2

Protein Analysis

169

Amino Acids

19.17

Weight (kDa)

8.72

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 358
AciI CCGC 3 cut(s) 34, 52, 468
AclWI GGATC 4 cut(s) 179, 248, 251, 261
AcoI YGGCCR 2 cut(s) 88, 147
AcuI CTGAAG 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 168, 210
AjnI CCWGG 2 cut(s) 107, 239
AleI CACNNNNGTG 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 4 cut(s) 179, 248, 251, 261
Aor13HI TCCGGA 1 cut(s) 358
AoxI GGCC 4 cut(s) 38, 88, 147, 191
ApeKI GCWGC 2 cut(s) 54, 220
AspLEI GCGC 2 cut(s) 296, 445
AspS9I GGNCC 2 cut(s) 39, 191
AsuC2I CCSGG 4 cut(s) 130, 146, 190, 211
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 293
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 41, 232
BccI CCATC 2 cut(s) 364, 492
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 109, 241
BcnI CCSGG 4 cut(s) 130, 146, 190, 211
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 375
BfoI RGCGCY 2 cut(s) 297, 446
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 2 cut(s) 55, 221
BlsI GCNGC 2 cut(s) 56, 222
Bme1390I CCNGG 6 cut(s) 109, 130, 146, 190, 211, 241
BmgT120I GGNCC 2 cut(s) 39, 191
BmiI GGNNCC 4 cut(s) 6, 50, 255, 295
BmrFI CCNGG 6 cut(s) 109, 130, 146, 190, 211, 241
BmrI ACTGGG 2 cut(s) 85, 393
BmuI ACTGGG 2 cut(s) 85, 393
Bpu10I CCTNAGC 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 218, 467
BpuMI CCSGG 4 cut(s) 130, 146, 190, 211
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 8, 99, 249
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 210
Bse1I ACTGG 2 cut(s) 80, 399
Bse8I GATNNNNATC 1 cut(s) 417
BseAI TCCGGA 1 cut(s) 358
BseBI CCWGG 2 cut(s) 109, 241
BseDI CCNNGG 3 cut(s) 8, 99, 249
BseGI GGATG 3 cut(s) 355, 418, 503
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 168, 210
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 80, 399
BseXI GCAGC 2 cut(s) 41, 232
BshFI GGCC 4 cut(s) 40, 90, 149, 193
BshNI GGYRCC 1 cut(s) 293
BsiSI CCGG 6 cut(s) 46, 129, 146, 189, 210, 359
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 168, 210
BsmAI GTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 4 cut(s) 40, 90, 149, 193
Bsp13I TCCGGA 1 cut(s) 358
Bsp143I GATC 4 cut(s) 171, 243, 253, 298
BspACI CCGC 3 cut(s) 34, 52, 468
BspANI GGCC 4 cut(s) 40, 90, 149, 193
BspCNI CTCAG 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 358
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 4 cut(s) 6, 50, 255, 295
BspPI GGATC 4 cut(s) 179, 248, 251, 261
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 80, 399
BssECI CCNNGG 3 cut(s) 8, 99, 249
BssMI GATC 4 cut(s) 171, 243, 253, 298
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 109, 241
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 294
BstAPI GCANNNNNTGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 3 cut(s) 355, 418, 503
BstH2I RGCGCY 2 cut(s) 297, 446
BstHHI GCGC 2 cut(s) 296, 445
BstKTI GATC 4 cut(s) 174, 246, 256, 301
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 4 cut(s) 171, 243, 253, 298
BstMWI GCNNNNNNNGC 3 cut(s) 46, 87, 391
BstNI CCWGG 2 cut(s) 109, 241
BstSCI CCNGG 6 cut(s) 107, 128, 144, 188, 209, 239
BstV1I GCAGC 2 cut(s) 41, 232
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 4 cut(s) 40, 90, 149, 193
BtgI CCRYGG 1 cut(s) 8
BtsCI GGATG 3 cut(s) 355, 418, 503
BtsIMutI CAGTG 1 cut(s) 406
CciI TCATGA 1 cut(s) 181
CfoI GCGC 2 cut(s) 296, 445
Cfr13I GGNCC 2 cut(s) 39, 191
Csp6I GTAC 1 cut(s) 320
CviAII CATG 2 cut(s) 22, 182
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 1 cut(s) 227
DinI GGCGCC 1 cut(s) 295
DpnI GATC 4 cut(s) 173, 245, 255, 300
DpnII GATC 4 cut(s) 171, 243, 253, 298
EaeI YGGCCR 2 cut(s) 88, 147
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 107, 239
EcoT14I CCWWGG 1 cut(s) 99
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 2 cut(s) 25, 185
FaiI YATR 2 cut(s) 23, 183
FaqI GGGAC 1 cut(s) 190
FatI CATG 2 cut(s) 21, 181
FauI CCCGC 1 cut(s) 461
Fnu4HI GCNGC 2 cut(s) 55, 221
FokI GGATG 2 cut(s) 342, 425
Fsp4HI GCNGC 2 cut(s) 55, 221
FspBI CTAG 1 cut(s) 375
GlaI GCGC 2 cut(s) 295, 444
GluI GCNGC 2 cut(s) 55, 221
HaeII RGCGCY 2 cut(s) 297, 446
HaeIII GGCC 4 cut(s) 40, 90, 149, 193
HapII CCGG 6 cut(s) 46, 129, 146, 189, 210, 359
HhaI GCGC 2 cut(s) 296, 445
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 2 cut(s) 25, 185
Hin6I GCGC 2 cut(s) 294, 443
HinP1I GCGC 2 cut(s) 294, 443
HinfI GANTC 3 cut(s) 178, 185, 206
HpaII CCGG 6 cut(s) 46, 129, 146, 189, 210, 359
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 4 cut(s) 136, 217, 258, 333
Hpy188III TCNNGA 6 cut(s) 64, 169, 175, 182, 281, 359
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 268, 328
HpyCH4V TGCA 3 cut(s) 315, 385, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 87, 391
HpyF3I CTNAG 1 cut(s) 227
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 2 cut(s) 25, 185
HspAI GCGC 2 cut(s) 294, 443
KasI GGCGCC 1 cut(s) 293
Kpn2I TCCGGA 1 cut(s) 358
Kzo9I GATC 4 cut(s) 171, 243, 253, 298
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 4 cut(s) 4, 54, 62, 217
Lsp1109I GCAGC 2 cut(s) 41, 232
MaeI CTAG 1 cut(s) 375
MalI GATC 4 cut(s) 173, 245, 255, 300
MboI GATC 4 cut(s) 171, 243, 253, 298
MboII GAAGA 4 cut(s) 37, 40, 106, 293
MflI RGATCY 1 cut(s) 253
MluCI AATT 3 cut(s) 67, 94, 124
Mly113I GGCGCC 1 cut(s) 294
MlyI GAGTC 2 cut(s) 172, 215
MmeI TCCRAC 2 cut(s) 114, 195
MnlI CCTC 5 cut(s) 30, 236, 242, 244, 451
MroI TCCGGA 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 6 cut(s) 46, 129, 146, 189, 210, 359
MspR9I CCNGG 6 cut(s) 109, 130, 146, 190, 211, 241
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 2 cut(s) 109, 241
MwoI GCNNNNNNNGC 3 cut(s) 46, 87, 391
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 4 cut(s) 130, 146, 190, 211
NdeII GATC 4 cut(s) 171, 243, 253, 298
NlaIII CATG 2 cut(s) 25, 185
NlaIV GGNNCC 4 cut(s) 6, 50, 255, 295
NmeAIII GCCGAG 5 cut(s) 66, 187, 229, 246, 274
OliI CACNNNNGTG 1 cut(s) 399
PagI TCATGA 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 119
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 2 cut(s) 56, 222
PleI GAGTC 2 cut(s) 172, 214
PluTI GGCGCC 1 cut(s) 297
PpsI GAGTC 2 cut(s) 172, 214
Psp6I CCWGG 2 cut(s) 107, 239
PspGI CCWGG 2 cut(s) 107, 239
PspN4I GGNNCC 4 cut(s) 6, 50, 255, 295
PspPI GGNCC 2 cut(s) 39, 191
PsrI GAACNNNNNNTAC 2 cut(s) 312, 344
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 119
SatI GCNGC 2 cut(s) 55, 221
Sau3AI GATC 4 cut(s) 171, 243, 253, 298
Sau96I GGNCC 2 cut(s) 39, 191
SchI GAGTC 2 cut(s) 172, 215
ScrFI CCNGG 6 cut(s) 109, 130, 146, 190, 211, 241
SetI ASST 4 cut(s) 105, 279, 321, 489
SfoI GGCGCC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 233, 482
SmoI CTYRAG 2 cut(s) 233, 482
Sse9I AATT 3 cut(s) 67, 94, 124
SsiI CCGC 3 cut(s) 34, 52, 468
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 6 cut(s) 107, 128, 144, 188, 209, 239
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 3 cut(s) 141, 344, 456
TasI AATT 3 cut(s) 67, 94, 124
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 406
TseI GCWGC 2 cut(s) 54, 220
TspDTI ATGAA 2 cut(s) 38, 198
TspGWI ACGGA 3 cut(s) 49, 294, 464
TspRI CASTG 1 cut(s) 406
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.