Rmu_sc0042317.1_g000001

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042317.1
OG0001016
Physical Location & Seq
Forward (+)
1 .. 886
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042317.1_g000001.1.cds

Sequence Viewer

Length: 808 bp
ttttatcactcttgaggagcttaagaaggtgattggtaatgtccctgagattgtagaactggttggtagtgaggtcgaaaatcaagtgcttcgcacgaccaaagaagatggggaggataaagtcaagtctgttatacgtttgatttttacccaactaatgtcaactaacaaggaaattataaccacagtaacaactaaattgaagagtcgtttacagacggaaagccaggtgaggcagctgacagaaaaggagcagctagtgttgcaattggaaaagcaatatccgaacgatgtgggtgtgatatctgcattctttcttaaccatgtgaagcttaatcctggagaagcattatgccttggagcaaatgaaccccatgcctatatatctggggattgcatcgagtgcatggcaacctcagacaacgtagttagggctggccttactcccaagcatcgagatatcaaaaccctttgttctatgctcacatataagcagggtttccctgaaatcttgcgaggagttgctgtgaattctcatgtaacaaggtacataccgccttttgaagaatttgaggttgatcggatccatcttccccacggagaatcaacagagtttcctgcagtacctggtccttccatttttgtggtcacttttgggaagggaaccatacgtacgagtaatggagatcatgcaatcatccaaggagatgttctgtttgcacctgcacacactgagattagcataacaagtgcatctgagttgcacatatatagagccggagtgaatagcacattcttagcctcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

268

Amino Acids

29.64

Weight (kDa)

5.75

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AarI CACCTGC 1 cut(s) 731
Acc36I ACCTGC 1 cut(s) 731
AciI CCGC 1 cut(s) 555
AclWI GGATC 2 cut(s) 578, 591
AcsI RAATTY 2 cut(s) 530, 567
AfaI GTAC 3 cut(s) 549, 625, 674
AflII CTTAAG 1 cut(s) 21
AgsI TTSAA 2 cut(s) 203, 564
AjnI CCWGG 3 cut(s) 226, 338, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 694, 726
AluBI AGCT 4 cut(s) 20, 239, 257, 332
AluI AGCT 4 cut(s) 20, 239, 257, 332
AlwI GGATC 2 cut(s) 578, 591
AlwNI CAGNNNCTG 1 cut(s) 627
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 236, 254
ApoI RAATTY 2 cut(s) 530, 567
AspS9I GGNCC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 41, 242
AvaII GGWCC 1 cut(s) 630
BamHI GGATCC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 248, 266
BccI CCATC 2 cut(s) 102, 595
BciT130I CCWGG 3 cut(s) 228, 340, 628
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 619
BfrI CTTAAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 731
BisI GCNGC 2 cut(s) 237, 255
BlsI GCNGC 2 cut(s) 238, 256
Bme1390I CCNGG 3 cut(s) 228, 340, 628
Bme18I GGWCC 1 cut(s) 630
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 2 cut(s) 585, 665
BmrFI CCNGG 3 cut(s) 228, 340, 628
BmsI GCATC 3 cut(s) 406, 461, 762
BpmI CTGGAG 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 356, 596, 701
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bse1I ACTGG 1 cut(s) 64
BseBI CCWGG 3 cut(s) 228, 340, 628
BseDI CCNNGG 3 cut(s) 356, 596, 701
BseGI GGATG 1 cut(s) 697
BseMII CTCAG 4 cut(s) 37, 430, 724, 748
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 2 cut(s) 30, 532
BseXI GCAGC 2 cut(s) 248, 266
BsgI GTGCAG 1 cut(s) 709
BshFI GGCC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 778
BsiWI CGTACG 1 cut(s) 672
BslFI GGGAC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 1 cut(s) 439
Bsp143I GATC 3 cut(s) 578, 583, 686
BspACI CCGC 1 cut(s) 555
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 4 cut(s) 38, 429, 725, 749
BspLI GGNNCC 2 cut(s) 585, 665
BspMAI CTGCAG 1 cut(s) 623
BspMI ACCTGC 1 cut(s) 731
BspPI GGATC 2 cut(s) 578, 591
BspTI CTTAAG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 356, 596, 701
BssMI GATC 3 cut(s) 578, 583, 686
BssT1I CCWWGG 2 cut(s) 356, 701
Bst2UI CCWGG 3 cut(s) 228, 340, 628
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 403
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 5 cut(s) 46, 416, 733, 757, 797
BstDSI CCRYGG 1 cut(s) 596
BstF5I GGATG 1 cut(s) 697
BstKTI GATC 3 cut(s) 581, 586, 689
BstMBI GATC 3 cut(s) 578, 583, 686
BstMWI GCNNNNNNNGC 2 cut(s) 263, 403
BstNI CCWGG 3 cut(s) 228, 340, 628
BstSCI CCNGG 3 cut(s) 226, 338, 626
BstSFI CTRYAG 1 cut(s) 619
BstSNI TACGTA 1 cut(s) 672
BstV1I GCAGC 2 cut(s) 248, 266
BstX2I RGATCY 1 cut(s) 583
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 596
BtsCI GGATG 1 cut(s) 697
BtsIMutI CAGTG 1 cut(s) 730
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 1 cut(s) 437
CaiI CAGNNNCTG 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 630
CsiI ACCWGGT 1 cut(s) 626
Csp6I GTAC 3 cut(s) 548, 624, 673
CviAII CATG 5 cut(s) 324, 375, 407, 537, 690
CviJI RGCY 9 cut(s) 20, 226, 239, 257, 332, 435, 439, 777, 801
CviKI_1 RGCY 9 cut(s) 20, 226, 239, 257, 332, 435, 439, 777, 801
CviQI GTAC 3 cut(s) 548, 624, 673
DdeI CTNAG 5 cut(s) 46, 416, 733, 757, 797
DpnI GATC 3 cut(s) 580, 585, 688
DpnII GATC 3 cut(s) 578, 583, 686
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco105I TACGTA 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 356, 701
Eco32I GATATC 2 cut(s) 304, 461
Eco47I GGWCC 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 3 cut(s) 226, 338, 626
EcoRV GATATC 2 cut(s) 304, 461
EcoT14I CCWWGG 2 cut(s) 356, 701
ErhI CCWWGG 2 cut(s) 356, 701
FaeI CATG 5 cut(s) 327, 378, 410, 540, 693
FaqI GGGAC 1 cut(s) 27
FatI CATG 5 cut(s) 323, 374, 406, 536, 689
Fnu4HI GCNGC 2 cut(s) 237, 255
FokI GGATG 1 cut(s) 684
Fsp4HI GCNGC 2 cut(s) 237, 255
FspBI CTAG 1 cut(s) 258
GluI GCNGC 2 cut(s) 237, 255
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 1 cut(s) 439
HapII CCGG 1 cut(s) 778
Hin1II CATG 5 cut(s) 327, 378, 410, 540, 693
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 2 cut(s) 206, 603
HpaII CCGG 1 cut(s) 778
HphI GGTGA 2 cut(s) 41, 242
Hpy166II GTNNAC 2 cut(s) 163, 213
Hpy188I TCNGA 4 cut(s) 286, 419, 583, 758
Hpy188III TCNNGA 2 cut(s) 12, 456
Hpy8I GTNNAC 2 cut(s) 163, 213
HpyAV CCTTC 3 cut(s) 20, 643, 653
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 3 cut(s) 137, 424, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 403
HpyF3I CTNAG 5 cut(s) 46, 416, 733, 757, 797
HpySE526I ACGT 3 cut(s) 137, 424, 671
Hsp92II CATG 5 cut(s) 327, 378, 410, 540, 693
Kzo9I GATC 3 cut(s) 578, 583, 686
LmnI GCTCC 3 cut(s) 17, 251, 360
Lsp1109I GCAGC 2 cut(s) 248, 266
LweI GCATC 3 cut(s) 406, 461, 762
MabI ACCWGGT 1 cut(s) 626
MaeI CTAG 1 cut(s) 258
MaeII ACGT 3 cut(s) 137, 424, 671
MaeIII GTNAC 3 cut(s) 188, 539, 647
MalI GATC 3 cut(s) 580, 585, 688
MboI GATC 3 cut(s) 578, 583, 686
MboII GAAGA 4 cut(s) 117, 215, 576, 582
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 583
MluCI AATT 5 cut(s) 175, 198, 267, 530, 567
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 7 cut(s) 8, 65, 107, 226, 425, 510, 566
MseI TTAA 3 cut(s) 22, 319, 334
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 21
MspI CCGG 1 cut(s) 778
MspR9I CCNGG 3 cut(s) 228, 340, 628
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 3 cut(s) 228, 340, 628
MwoI GCNNNNNNNGC 2 cut(s) 263, 403
NdeII GATC 3 cut(s) 578, 583, 686
NlaIII CATG 5 cut(s) 327, 378, 410, 540, 693
NlaIV GGNNCC 2 cut(s) 585, 665
NmuCI GTSAC 1 cut(s) 647
PaqCI CACCTGC 1 cut(s) 731
PctI GAATGC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 603
Pfl23II CGTACG 1 cut(s) 672
PfoI TCCNGGA 1 cut(s) 338
PkrI GCNGC 2 cut(s) 238, 256
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 672
PsiI TTATAA 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 226, 338, 626
PspGI CCWGG 3 cut(s) 226, 338, 626
PspLI CGTACG 1 cut(s) 672
PspN4I GGNNCC 2 cut(s) 585, 665
PspPI GGNCC 1 cut(s) 630
PsrI GAACNNNNNNTAC 2 cut(s) 656, 688
PstI CTGCAG 1 cut(s) 623
PstNI CAGNNNCTG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 583
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 3 cut(s) 549, 625, 674
RsaNI GTAC 3 cut(s) 548, 624, 673
RseI CAYNNNNRTG 1 cut(s) 642
SaqAI TTAA 3 cut(s) 22, 319, 334
SatI GCNGC 2 cut(s) 237, 255
Sau3AI GATC 3 cut(s) 578, 583, 686
Sau96I GGNCC 1 cut(s) 630
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 3 cut(s) 228, 340, 628
SexAI ACCWGGT 1 cut(s) 626
SfaNI GCATC 3 cut(s) 406, 461, 762
SfcI CTRYAG 1 cut(s) 619
SinI GGWCC 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 2 cut(s) 12, 21
SmoI CTYRAG 2 cut(s) 12, 21
SnaBI TACGTA 1 cut(s) 672
Sse9I AATT 5 cut(s) 175, 198, 267, 530, 567
SsiI CCGC 1 cut(s) 555
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 226, 338, 626
StyI CCWWGG 2 cut(s) 356, 701
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 3 cut(s) 140, 427, 674
TaqI TCGA 3 cut(s) 76, 400, 455
TasI AATT 5 cut(s) 175, 198, 267, 530, 567
TfiI GAWTC 1 cut(s) 603
Tru1I TTAA 3 cut(s) 22, 319, 334
Tru9I TTAA 3 cut(s) 22, 319, 334
TscAI CASTG 1 cut(s) 737
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 2 cut(s) 236, 254
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 1 cut(s) 382
TspGWI ACGGA 2 cut(s) 234, 613
TspRI CASTG 1 cut(s) 737
Vha464I CTTAAG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 630
XapI RAATTY 2 cut(s) 530, 567
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.