Rorug04G0016300

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001016
Physical Location & Seq
Forward (+)
2514784 .. 2515341
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0016300.1

Sequence Viewer

Length: 450 bp
ATGGCTGGGTTTGGAAGGCTACCTGGTGTTGGTCTGCCTCCAAGAAGAAGATCAAACCACACCCACCCCCGTCAAGAAGGAAATCAATGGTTCAAGCCATCAATGACTTCCATGGATATTCTGGATGATGAAGCAGCTCATAAAGCCCGGGAAAGACTAGAGAAAAGGCTTGGCCGTTTCAGACCCTGCTCAAGGAGCAGCAGCAGCAACCATTATGCCAAAATGGGTTCAAGTTCAAAGCAATTAGGGAGGCCTTCACGGGGATCCTTCTTCTCTCTCAGCAGAAATGAAATAGATGTTTGTGCTATTTGCTTGGAGAATTTTGAGGCAGGAGAAGAGGCCATGGAACTCGCGTGTGCCCATAAATTTCATTCCCATTGTCTTTCGCCTTGGCTTCATGCCCATTCGGATTGCCCCTATTGTCGGACTAATGTTTCTGTTTGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

149

Amino Acids

16.76

Weight (kDa)

9.04

Isoelectric Point (pI)

65.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 100 - 142 2.5e-14 Ring finger domain
zf-RING_11 PF17123 101 - 128 6.6e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 101 - 141 8.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 101 - 141 3.9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 353
AclWI GGATC 2 cut(s) 258, 271
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 2 cut(s) 319, 365
AfiI CCNNNNNNNGG 4 cut(s) 29, 192, 260, 423
AgsI TTSAA 3 cut(s) 94, 231, 237
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 2 cut(s) 258, 271
AlwNI CAGNNNCTG 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 3 cut(s) 172, 251, 339
ApeKI GCWGC 4 cut(s) 134, 198, 201, 204
ApoI RAATTY 2 cut(s) 319, 365
AsuC2I CCSGG 2 cut(s) 148, 149
AvaI CYCGRG 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 361
BamHI GGATCC 1 cut(s) 263
BbvI GCAGC 4 cut(s) 146, 210, 213, 216
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 2 cut(s) 148, 149
BfaI CTAG 1 cut(s) 158
BisI GCNGC 4 cut(s) 135, 199, 202, 205
BlsI GCNGC 4 cut(s) 136, 200, 203, 206
Bme1390I CCNGG 3 cut(s) 24, 148, 149
BmeT110I CYCGRG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 3 cut(s) 24, 148, 149
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 148, 149
BsaJI CCNNGG 4 cut(s) 111, 147, 342, 389
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 192, 260, 423
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 4 cut(s) 111, 147, 342, 389
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 4 cut(s) 29, 192, 260, 423
BseMII CTCAG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 4 cut(s) 146, 210, 213, 216
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 3 cut(s) 174, 253, 341
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 29, 192, 260, 423
BsnI GGCC 3 cut(s) 174, 253, 341
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 50, 263
Bsp19I CCATGG 2 cut(s) 111, 342
BspANI GGCC 3 cut(s) 174, 253, 341
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 2 cut(s) 258, 271
BssECI CCNNGG 4 cut(s) 111, 147, 342, 389
BssMI GATC 2 cut(s) 50, 263
BssT1I CCWWGG 3 cut(s) 111, 342, 389
Bst2UI CCWGG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 2 cut(s) 111, 342
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 353
BstKTI GATC 2 cut(s) 53, 266
BstMBI GATC 2 cut(s) 50, 263
BstMWI GCNNNNNNNGC 3 cut(s) 143, 195, 204
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 3 cut(s) 22, 146, 147
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 4 cut(s) 146, 210, 213, 216
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 3 cut(s) 174, 253, 341
BtgI CCRYGG 2 cut(s) 111, 342
BtsCI GGATG 1 cut(s) 130
CaiI CAGNNNCTG 1 cut(s) 186
Cfr9I CCCGGG 1 cut(s) 147
CsiI ACCWGGT 1 cut(s) 22
CviAII CATG 3 cut(s) 112, 343, 398
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 52, 265
DpnII GATC 2 cut(s) 50, 263
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 3 cut(s) 111, 342, 389
Eco147I AGGCCT 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 3 cut(s) 111, 342, 389
ErhI CCWWGG 3 cut(s) 111, 342, 389
FaeI CATG 3 cut(s) 115, 346, 401
FaiI YATR 6 cut(s) 113, 141, 216, 344, 363, 399
FatI CATG 3 cut(s) 111, 342, 397
Fnu4HI GCNGC 4 cut(s) 135, 199, 202, 205
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 135, 199, 202, 205
FspBI CTAG 1 cut(s) 158
GluI GCNGC 4 cut(s) 135, 199, 202, 205
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 3 cut(s) 174, 253, 341
HapII CCGG 1 cut(s) 148
Hin1II CATG 3 cut(s) 115, 346, 401
HpaII CCGG 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 182, 409, 426
Hpy188III TCNNGA 2 cut(s) 74, 122
HpyAV CCTTC 4 cut(s) 9, 71, 264, 277
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 195, 204
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 3 cut(s) 115, 346, 401
Kzo9I GATC 2 cut(s) 50, 263
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 6 cut(s) 9, 36, 107, 161, 199, 315
Lsp1109I GCAGC 4 cut(s) 146, 210, 213, 216
MabI ACCWGGT 1 cut(s) 22
MaeI CTAG 1 cut(s) 158
MalI GATC 2 cut(s) 52, 265
MboI GATC 2 cut(s) 50, 263
MboII GAAGA 4 cut(s) 57, 60, 262, 347
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 3 cut(s) 242, 319, 365
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 4 cut(s) 48, 243, 319, 331
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 3 cut(s) 24, 148, 149
MvaI CCWGG 1 cut(s) 24
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 143, 195, 204
NciI CCSGG 2 cut(s) 148, 149
NcoI CCATGG 2 cut(s) 111, 342
NdeII GATC 2 cut(s) 50, 263
NlaIII CATG 3 cut(s) 115, 346, 401
NlaIV GGNNCC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 253
PkrI GCNGC 4 cut(s) 136, 200, 203, 206
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 186
PsuI RGATCY 1 cut(s) 263
SatI GCNGC 4 cut(s) 135, 199, 202, 205
Sau3AI GATC 2 cut(s) 50, 263
ScrFI CCNGG 3 cut(s) 24, 148, 149
SduI GDGCHC 1 cut(s) 361
SetI ASST 2 cut(s) 25, 139
SexAI ACCWGGT 1 cut(s) 22
SmaI CCCGGG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 3 cut(s) 242, 319, 365
SseBI AGGCCT 1 cut(s) 253
SspMI CTAG 1 cut(s) 158
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 22, 146, 147
StyI CCWWGG 3 cut(s) 111, 342, 389
TasI AATT 3 cut(s) 242, 319, 365
TseI GCWGC 4 cut(s) 134, 198, 201, 204
TspDTI ATGAA 4 cut(s) 144, 303, 359, 386
TspMI CCCGGG 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 190
XapI RAATTY 2 cut(s) 319, 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 147
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.