Rorug07G0102200

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001016
Physical Location & Seq
Forward (+)
8077311 .. 8079041
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0102200.1

Sequence Viewer

Length: 729 bp
ATGGACAACAACCCCAACGCCGCCGCCACCACCGCCATTACCGCCCAGCACCAGCACCAGCACCAAGCCCAGTCCGCCACCTACCCTCCCGCCCAGGGCCCGCCGTCCTCCGTCGCGGCGCCGCCGTTCCACCACCTCCTCCAGGCTCAGCAGCAGCAGCTTCAGATGTTCTGGAACTACCAGCGGCAGGAGATCGAGCAGGTCAACGACTTCAAGAACCACCAGCTCCCCTTGGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCAGGATGATCTCAGCCGAGGCCCCCGTCCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAACGGCGCACTCTCCAGAAAAACGACATTGCCGCCGCCATTACCAGGACCGATATTTTCGATTTCCTCGTCGATATTGTCCCCCGGGATGAGATCAAGGACGAGGCCGGCCTCGGAGGTGTCGTCGGCATGGTGGGGGCCACCGCCAGTGGGGTCCCCTACTACTACCCGCCGATTGGCCAGCCGGCCGGTGCGCCGGGAGGGATGATGATTGGGAGGCCGGCGATGGACCCCTCGGGAGTTTATGCCCAGCCGCCGTCGCAGGCGTGGCAGTCCGTGTGGCAGACGGCGGCGGAAGATGGGTCCTATGGGAGTGGAGGGAGCAGTGGCCAGGGCAATCTTGATGGCCAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

242

Amino Acids

26.34

Weight (kDa)

5.6

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 67 - 138 9.8e-18 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 75 - 138 1e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AatII GACGTC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 348
AccII CGCG 1 cut(s) 116
AcoI YGGCCR 4 cut(s) 550, 558, 700, 718
AcuI CTGAAG 1 cut(s) 146
AcyI GRCGYC 2 cut(s) 119, 270
AfiI CCNNNNNNNGG 7 cut(s) 95, 142, 187, 364, 417, 522, 548
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 5 cut(s) 93, 141, 350, 416, 702
AluBI AGCT 4 cut(s) 160, 226, 322, 337
AluI AGCT 4 cut(s) 160, 226, 322, 337
Alw21I GWGCWC 2 cut(s) 324, 339
Ama87I CYCGRG 3 cut(s) 332, 456, 607
ApaI GGGCCC 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 151, 154, 157
AspLEI GCGC 3 cut(s) 121, 381, 568
AspS9I GGNCC 9 cut(s) 97, 98, 235, 292, 420, 510, 526, 601, 675
AsuC2I CCSGG 3 cut(s) 457, 458, 570
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 3 cut(s) 332, 456, 607
AvaII GGWCC 4 cut(s) 420, 526, 601, 675
BaeGI GKGCMC 1 cut(s) 101
BalI TGGCCA 3 cut(s) 552, 702, 720
BanI GGYRCC 1 cut(s) 118
BanII GRGCYC 3 cut(s) 101, 324, 339
Bbv12I GWGCWC 2 cut(s) 324, 339
BbvI GCAGC 3 cut(s) 163, 166, 169
BccI CCATC 4 cut(s) 350, 592, 665, 710
BceAI ACGGC 5 cut(s) 88, 109, 392, 613, 675
BciT130I CCWGG 5 cut(s) 95, 143, 352, 418, 704
BcnI CCSGG 3 cut(s) 457, 458, 570
BfoI RGCGCY 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 190
BlpI GCTNAGC 1 cut(s) 147
Bme1390I CCNGG 8 cut(s) 95, 143, 352, 418, 457, 458, 570, 704
Bme18I GGWCC 4 cut(s) 420, 526, 601, 675
BmeT110I CYCGRG 3 cut(s) 332, 456, 607
BmgT120I GGNCC 9 cut(s) 97, 98, 235, 292, 420, 510, 526, 601, 675
BmiI GGNNCC 9 cut(s) 99, 120, 294, 356, 511, 527, 528, 603, 676
BmrFI CCNGG 8 cut(s) 95, 143, 352, 418, 457, 458, 570, 704
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 64
BpmI CTGGAG 2 cut(s) 125, 371
Bpu1102I GCTNAGC 1 cut(s) 147
BpuMI CCSGG 3 cut(s) 457, 458, 570
BsaHI GRCGYC 2 cut(s) 119, 270
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 480, 510
Bsc4I CCNNNNNNNGG 7 cut(s) 95, 142, 187, 364, 417, 522, 548
Bse118I RCCGGY 4 cut(s) 479, 556, 560, 592
Bse1I ACTGG 2 cut(s) 70, 519
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 5 cut(s) 95, 143, 352, 418, 704
BseGI GGATG 5 cut(s) 282, 327, 342, 466, 582
BseLI CCNNNNNNNGG 7 cut(s) 95, 142, 187, 364, 417, 522, 548
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 161, 297
BseNI ACTGG 2 cut(s) 70, 519
BseRI GAGGAG 2 cut(s) 128, 380
BseSI GKGCMC 1 cut(s) 101
BseX3I CGGCCG 1 cut(s) 558
BseXI GCAGC 3 cut(s) 163, 166, 169
BseYI CCCAGC 2 cut(s) 45, 621
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 561
BshNI GGYRCC 1 cut(s) 118
BsiEI CGRYCG 1 cut(s) 561
BsiHKAI GWGCWC 2 cut(s) 324, 339
BsiHKCI CYCGRG 3 cut(s) 332, 456, 607
BsiSI CCGG 6 cut(s) 457, 480, 557, 561, 569, 593
BslFI GGGAC 2 cut(s) 437, 512
BslI CCNNNNNNNGG 7 cut(s) 95, 142, 187, 364, 417, 522, 548
BsmFI GGGAC 2 cut(s) 437, 512
BsoBI CYCGRG 3 cut(s) 332, 456, 607
Bsp120I GGGCCC 1 cut(s) 97
Bsp1286I GDGCHC 3 cut(s) 101, 324, 339
Bsp143I GATC 4 cut(s) 192, 249, 279, 465
Bsp1720I GCTNAGC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 160, 296
BspFNI CGCG 1 cut(s) 116
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 9 cut(s) 99, 120, 294, 356, 511, 527, 528, 603, 676
BspMI ACCTGC 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 4 cut(s) 479, 556, 560, 592
BsrI ACTGG 2 cut(s) 70, 519
BssAI RCCGGY 4 cut(s) 479, 556, 560, 592
BssMI GATC 4 cut(s) 192, 249, 279, 465
BssNI GRCGYC 2 cut(s) 119, 270
BssT1I CCWWGG 2 cut(s) 231, 309
Bst2UI CCWGG 5 cut(s) 95, 143, 352, 418, 704
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 2 cut(s) 119, 270
BstC8I GCNNGC 9 cut(s) 101, 238, 316, 320, 481, 554, 558, 594, 636
BstDEI CTNAG 2 cut(s) 147, 283
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 5 cut(s) 282, 327, 342, 466, 582
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 3 cut(s) 121, 381, 568
BstKTI GATC 4 cut(s) 195, 252, 282, 468
BstMBI GATC 4 cut(s) 192, 249, 279, 465
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 6 cut(s) 32, 41, 74, 157, 631, 640
BstNI CCWGG 5 cut(s) 95, 143, 352, 418, 704
BstSCI CCNGG 8 cut(s) 93, 141, 350, 416, 455, 456, 568, 702
BstSLI GKGCMC 1 cut(s) 101
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 3 cut(s) 163, 166, 169
BstZI CGGCCG 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 611
BtsCI GGATG 5 cut(s) 282, 327, 342, 466, 582
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 2 cut(s) 526, 703
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 9 cut(s) 101, 238, 316, 320, 481, 554, 558, 594, 636
CciI TCATGA 1 cut(s) 252
CfoI GCGC 3 cut(s) 121, 381, 568
Cfr10I RCCGGY 4 cut(s) 479, 556, 560, 592
Cfr13I GGNCC 9 cut(s) 97, 98, 235, 292, 420, 510, 526, 601, 675
Cfr9I CCCGGG 1 cut(s) 456
CviAII CATG 2 cut(s) 253, 502
DdeI CTNAG 2 cut(s) 147, 283
DinI GGCGCC 1 cut(s) 120
DpnI GATC 4 cut(s) 194, 251, 281, 467
DpnII GATC 4 cut(s) 192, 249, 279, 465
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 4 cut(s) 550, 558, 700, 718
EagI CGGCCG 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 2 cut(s) 64, 680
Ecl136II GAGCTC 2 cut(s) 322, 337
EclXI CGGCCG 1 cut(s) 558
Eco130I CCWWGG 2 cut(s) 231, 309
Eco147I AGGCCT 1 cut(s) 314
Eco24I GRGCYC 3 cut(s) 101, 324, 339
Eco47I GGWCC 4 cut(s) 420, 526, 601, 675
Eco52I CGGCCG 1 cut(s) 558
Eco53kI GAGCTC 2 cut(s) 322, 337
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 3 cut(s) 332, 456, 607
EcoICRI GAGCTC 2 cut(s) 322, 337
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 4 cut(s) 97, 292, 526, 675
EcoRII CCWGG 5 cut(s) 93, 141, 350, 416, 702
EcoT14I CCWWGG 2 cut(s) 231, 309
EcoT38I GRGCYC 3 cut(s) 101, 324, 339
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 2 cut(s) 231, 309
FaeI CATG 2 cut(s) 256, 505
FaiI YATR 4 cut(s) 254, 503, 618, 681
FaqI GGGAC 2 cut(s) 437, 512
FatI CATG 2 cut(s) 252, 501
FauI CCCGC 4 cut(s) 97, 108, 245, 549
FokI GGATG 5 cut(s) 289, 314, 329, 473, 589
FriOI GRGCYC 3 cut(s) 101, 324, 339
FseI GGCCGGCC 1 cut(s) 483
GlaI GCGC 3 cut(s) 120, 380, 567
GsaI CCCAGC 2 cut(s) 49, 625
GsuI CTGGAG 2 cut(s) 125, 371
HaeII RGCGCY 1 cut(s) 122
HapII CCGG 6 cut(s) 457, 480, 557, 561, 569, 593
HhaI GCGC 3 cut(s) 121, 381, 568
Hin1I GRCGYC 2 cut(s) 119, 270
Hin1II CATG 2 cut(s) 256, 505
Hin6I GCGC 3 cut(s) 119, 379, 566
HinP1I GCGC 3 cut(s) 119, 379, 566
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 6 cut(s) 457, 480, 557, 561, 569, 593
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 165, 488
Hpy188III TCNNGA 8 cut(s) 172, 214, 244, 253, 274, 388, 609, 713
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 5 cut(s) 116, 266, 446, 500, 634
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 41, 74, 157, 631, 640
HpyF3I CTNAG 2 cut(s) 147, 283
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 119, 270
Hsp92II CATG 2 cut(s) 256, 505
HspAI GCGC 3 cut(s) 119, 379, 566
KasI GGCGCC 1 cut(s) 118
KflI GGGWCCC 1 cut(s) 526
KroI GCCGGC 3 cut(s) 479, 556, 592
KroNI GCCGGC 3 cut(s) 481, 558, 594
Kzo9I GATC 4 cut(s) 192, 249, 279, 465
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 4 cut(s) 231, 353, 360, 693
Lsp1109I GCAGC 3 cut(s) 163, 166, 169
LweI GCATC 1 cut(s) 249
MaeII ACGT 1 cut(s) 270
MalI GATC 4 cut(s) 194, 251, 281, 467
MbiI CCGCTC 1 cut(s) 348
MboI GATC 4 cut(s) 192, 249, 279, 465
MboII GAAGA 3 cut(s) 259, 316, 680
MhlI GDGCHC 3 cut(s) 101, 324, 339
MlsI TGGCCA 3 cut(s) 552, 702, 720
MluNI TGGCCA 3 cut(s) 552, 702, 720
Mly113I GGCGCC 1 cut(s) 119
Mox20I TGGCCA 3 cut(s) 552, 702, 720
MroNI GCCGGC 3 cut(s) 479, 556, 592
MscI TGGCCA 3 cut(s) 552, 702, 720
Msp20I TGGCCA 3 cut(s) 552, 702, 720
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 6 cut(s) 457, 480, 557, 561, 569, 593
MspR9I CCNGG 8 cut(s) 95, 143, 352, 418, 457, 458, 570, 704
MvaI CCWGG 5 cut(s) 95, 143, 352, 418, 704
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 6 cut(s) 32, 41, 74, 157, 631, 640
NaeI GCCGGC 3 cut(s) 481, 558, 594
NarI GGCGCC 1 cut(s) 119
NciI CCSGG 3 cut(s) 457, 458, 570
NdeII GATC 4 cut(s) 192, 249, 279, 465
NgoMIV GCCGGC 3 cut(s) 479, 556, 592
NlaIII CATG 2 cut(s) 256, 505
NlaIV GGNNCC 9 cut(s) 99, 120, 294, 356, 511, 527, 528, 603, 676
NmeAIII GCCGAG 2 cut(s) 313, 388
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 252
PasI CCCWGGG 1 cut(s) 94
PceI AGGCCT 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 492
PdiI GCCGGC 3 cut(s) 481, 558, 594
PluTI GGCGCC 1 cut(s) 122
PpuMI RGGWCCY 2 cut(s) 526, 675
Psp124BI GAGCTC 2 cut(s) 324, 339
Psp5II RGGWCCY 2 cut(s) 526, 675
Psp6I CCWGG 5 cut(s) 93, 141, 350, 416, 702
PspFI CCCAGC 2 cut(s) 45, 621
PspGI CCWGG 5 cut(s) 93, 141, 350, 416, 702
PspN4I GGNNCC 9 cut(s) 99, 120, 294, 356, 511, 527, 528, 603, 676
PspOMI GGGCCC 1 cut(s) 97
PspPI GGNCC 9 cut(s) 97, 98, 235, 292, 420, 510, 526, 601, 675
PspPPI RGGWCCY 2 cut(s) 526, 675
PspXI VCTCGAGB 1 cut(s) 332
RigI GGCCGGCC 1 cut(s) 483
SacI GAGCTC 2 cut(s) 324, 339
SapI GCTCTTC 1 cut(s) 329
Sau3AI GATC 4 cut(s) 192, 249, 279, 465
Sau96I GGNCC 9 cut(s) 97, 98, 235, 292, 420, 510, 526, 601, 675
ScrFI CCNGG 8 cut(s) 95, 143, 352, 418, 457, 458, 570, 704
SduI GDGCHC 3 cut(s) 101, 324, 339
SfaNI GCATC 1 cut(s) 249
SfoI GGCGCC 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 4 cut(s) 420, 526, 601, 675
SlaI CTCGAG 1 cut(s) 332
SmaI CCCGGG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SseBI AGGCCT 1 cut(s) 314
SspDI GGCGCC 1 cut(s) 118
SstI GAGCTC 2 cut(s) 324, 339
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 8 cut(s) 93, 141, 350, 416, 455, 456, 568, 702
StyI CCWWGG 2 cut(s) 231, 309
TaiI ACGT 1 cut(s) 273
TaqI TCGA 4 cut(s) 195, 333, 432, 444
TaqII GACCGA 1 cut(s) 437
TauI GCSGC 9 cut(s) 23, 26, 119, 124, 187, 407, 410, 628, 665
TscAI CASTG 2 cut(s) 526, 703
TseI GCWGC 3 cut(s) 151, 154, 157
TspDTI ATGAA 2 cut(s) 269, 316
TspGWI ACGGA 2 cut(s) 100, 637
TspMI CCCGGG 1 cut(s) 456
TspRI CASTG 2 cut(s) 526, 703
VpaK11BI GGWCC 4 cut(s) 420, 526, 601, 675
XagI CCTNNNNNAGG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 332
XmaI CCCGGG 1 cut(s) 456
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.