RLG00000009278

Belongs to the mannose-6-phosphate isomerase type 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001016
Physical Location & Seq
Forward (+)
50161288 .. 50162768
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009278

Sequence Viewer

Length: 1257 bp
ATGGAGATGCAACAACCAAAGCAGAGGCAGAGGAGTGTTCAGAGGCTTAGATGCTCTGTCATGAACTACGACTGGGGTAAGAAAGGTCGAGACTCTGTGGTGGGCAGGTTGTGTGCCTCCAATTCTCATTCTGAAATCGACCTAGAAAAGCCTTACGCTGAAATGTGGATGGGAACACATGACTCTGGACCCTCCTTTGTGATTGATCAGGATCTGAATAATAATAATAGCACCACTACTGGGTCATCTCCGTCTCTCAGAGACTGGGTTTCTAACAACCCTAATGACATGCTCGGTCACAAGGTTGTCCAAAAATGGGGCTCCTCTGATCTGCCCTTCTTGTTTAAGGTGCAATCCGTGGCAAAGGCATTGTCAATACAGGCACACCCAGATAAGGAATTGGCCAAGGCTTTGCACAAGTCTATGCCAGATATTTACAAGGATGATAATTATAAGCCTGAGATGGCGCTGGCCTTGACACATTTTCAGGCTCTTTGTGGTTTTATCACTCTTGAGGATGAGGTCGAAAACCAAGTGCTTCGCACGACCAAAGAAGATGGGGAGAATAAAGTGAAGTCTGTTATACGTTTGATTTTTACCCAACTCATGTCAACTGACAAGGAAATTATAAGCACAGTAACAACTAAATTGAAGAGTCGCTTAGAGACGGAAAGCCAGGTGAGGCAGCTGACAGAAAAGGAGCAGCTAGTGTTGCAATTGGAAAAGCAATATCCAAACGATGTGGGTGTGATATCTGCATTCTTTCTTAATTATGTGAAGCTTAATCCTGGAGAAGCATTATGCCTTGGAGCAAATGAACCCCATGCCTATATATCTGGGGATTGCATCGAGTGCATGGCAACCTCAGACAACGTAGTTAGGGCTGGCCTTACTCCCAAGCATCGAGATATCAAAACCCTCTGTTCTATGCTCACATATAAGCAGGGTTTCCCTGAAATCTTGCGAGGAGTTGCTGTGAATCCTAATGTAACAAGGTACATACCGCCTTTTGAAGAATTTGAGGTTGATCGGTTCCATCTTCCCCACGGAGAATCAACAGAGTTCCCTGCAGTACCTGGTCCTTCCATTTTTGTGGTCACTTTTGGGAAGGGAACCTTATGTACAAGTAATGGAGATCATGCAATCATCCAAGGAGATGTTCTGTTTGCACCTGCACACAATGAGATTAGCATAACAAGTACATCTGAGTTGCACATATATAGAGCCGGAGTGAATAGCACATTCTTAGCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000032 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004476 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005996 GO:0006056 GO:0006057 GO:0006082 GO:0006139 GO:0006464 GO:0006486 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009108 GO:0009110 GO:0009225 GO:0009226 GO:0009298 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009636 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0014070 GO:0016043 GO:0016051 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017085 GO:0018130 GO:0019438 GO:0019538 GO:0019673 GO:0019752 GO:0019852 GO:0019853 GO:0022414 GO:0031505 GO:0031506 GO:0031667 GO:0032025 GO:0032501 GO:0032502 GO:0033273 GO:0033591 GO:0034284 GO:0034285 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0042364 GO:0042493 GO:0042546 GO:0043170 GO:0043412 GO:0043413 GO:0043436 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045229 GO:0046364 GO:0046394 GO:0046483 GO:0046680 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0070085 GO:0070589 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 ko01130 map00051 map00520 map01100 map01110 map01130
Pfam Domains
Protein Families
PMI_typeI

Protein Analysis

419

Amino Acids

46.7

Weight (kDa)

5.93

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 13 - 168 8.9e-44 Phosphomannose isomerase type I, catalytic domain
PMI_typeI_hel PF20512 173 - 256 8.3e-14 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 453, 629
AarI CACCTGC 1 cut(s) 1180
Acc36I ACCTGC 2 cut(s) 96, 1180
AciI CCGC 1 cut(s) 1004
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 1016
AfaI GTAC 4 cut(s) 998, 1074, 1123, 1201
AfiI CCNNNNNNNGG 3 cut(s) 240, 316, 394
AgsI TTSAA 2 cut(s) 652, 1013
AjnI CCWGG 3 cut(s) 675, 787, 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 1143, 1175
AluBI AGCT 3 cut(s) 688, 706, 781
AluI AGCT 3 cut(s) 688, 706, 781
Alw26I GTCTC 4 cut(s) 84, 255, 258, 659
AlwI GGATC 1 cut(s) 219
AlwNI CAGNNNCTG 3 cut(s) 214, 264, 1076
AoxI GGCC 3 cut(s) 402, 471, 886
ApeKI GCWGC 2 cut(s) 685, 703
ApoI RAATTY 1 cut(s) 1016
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 2 cut(s) 188, 1079
AsuHPI GGTGA 1 cut(s) 691
AvaII GGWCC 2 cut(s) 188, 1079
BalI TGGCCA 1 cut(s) 404
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 697, 715
BccI CCATC 4 cut(s) 163, 457, 551, 1044
BciT130I CCWGG 3 cut(s) 677, 789, 1077
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 4 cut(s) 84, 255, 258, 659
BfaI CTAG 2 cut(s) 143, 707
BfmI CTRYAG 1 cut(s) 1068
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 2 cut(s) 96, 1180
BisI GCNGC 2 cut(s) 686, 704
BlsI GCNGC 2 cut(s) 687, 705
Bme1390I CCNGG 3 cut(s) 677, 789, 1077
Bme18I GGWCC 2 cut(s) 188, 1079
BmgT120I GGNCC 2 cut(s) 188, 1079
BmiI GGNNCC 4 cut(s) 190, 322, 1034, 1114
BmrFI CCNGG 3 cut(s) 677, 789, 1077
BmrI ACTGGG 3 cut(s) 82, 249, 274
BmsI GCATC 3 cut(s) 41, 855, 910
BmuI ACTGGG 3 cut(s) 82, 249, 274
BpmI CTGGAG 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 533
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 5 cut(s) 357, 405, 805, 1045, 1150
BsaXI ACNNNNNCTCC 2 cut(s) 960, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 316, 394
Bse1I ACTGG 3 cut(s) 77, 244, 269
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 3 cut(s) 677, 789, 1077
BseDI CCNNGG 5 cut(s) 357, 405, 805, 1045, 1150
BseGI GGATG 4 cut(s) 174, 448, 523, 1146
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 3 cut(s) 240, 316, 394
BseMII CTCAG 4 cut(s) 271, 450, 879, 1197
BseNI ACTGG 3 cut(s) 77, 244, 269
BseRI GAGGAG 3 cut(s) 46, 313, 981
BseXI GCAGC 2 cut(s) 697, 715
BsgI GTGCAG 1 cut(s) 1158
BshFI GGCC 3 cut(s) 404, 473, 888
BsiSI CCGG 1 cut(s) 1227
BslI CCNNNNNNNGG 3 cut(s) 240, 316, 394
BsmAI GTCTC 4 cut(s) 84, 255, 258, 659
BsmBI CGTCTC 2 cut(s) 258, 659
BsmI GAATGC 1 cut(s) 758
BsnI GGCC 3 cut(s) 404, 473, 888
Bsp1286I GDGCHC 1 cut(s) 323
Bsp1407I TGTACA 1 cut(s) 1121
Bsp143I GATC 5 cut(s) 205, 211, 328, 1027, 1135
BspACI CCGC 1 cut(s) 1004
BspANI GGCC 3 cut(s) 404, 473, 888
BspCNI CTCAG 4 cut(s) 270, 451, 878, 1198
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 4 cut(s) 190, 322, 1034, 1114
BspMAI CTGCAG 1 cut(s) 1072
BspMI ACCTGC 2 cut(s) 96, 1180
BspPI GGATC 1 cut(s) 219
BsrGI TGTACA 1 cut(s) 1121
BsrI ACTGG 3 cut(s) 77, 244, 269
BssECI CCNNGG 5 cut(s) 357, 405, 805, 1045, 1150
BssMI GATC 5 cut(s) 205, 211, 328, 1027, 1135
BssT1I CCWWGG 3 cut(s) 405, 805, 1150
Bst2UI CCWGG 3 cut(s) 677, 789, 1077
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 852
BstAUI TGTACA 1 cut(s) 1121
BstC8I GCNNGC 2 cut(s) 471, 886
BstDEI CTNAG 7 cut(s) 47, 257, 459, 661, 865, 1206, 1246
BstDSI CCRYGG 2 cut(s) 357, 1045
BstF5I GGATG 4 cut(s) 174, 448, 523, 1146
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 5 cut(s) 208, 214, 331, 1030, 1138
BstMAI GTCTC 4 cut(s) 84, 255, 258, 659
BstMBI GATC 5 cut(s) 205, 211, 328, 1027, 1135
BstMWI GCNNNNNNNGC 2 cut(s) 712, 852
BstNI CCWGG 3 cut(s) 677, 789, 1077
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 675, 787, 1075
BstSFI CTRYAG 1 cut(s) 1068
BstV1I GCAGC 2 cut(s) 697, 715
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 404, 473, 888
BtgI CCRYGG 2 cut(s) 357, 1045
BtsCI GGATG 4 cut(s) 174, 448, 523, 1146
BveI ACCTGC 2 cut(s) 96, 1180
Cac8I GCNNGC 2 cut(s) 471, 886
CaiI CAGNNNCTG 3 cut(s) 214, 264, 1076
CciI TCATGA 1 cut(s) 60
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 188, 1079
CsiI ACCWGGT 1 cut(s) 1075
Csp6I GTAC 4 cut(s) 997, 1073, 1122, 1200
CspCI CAANNNNNGTGG 2 cut(s) 723, 758
CviAII CATG 7 cut(s) 61, 179, 289, 607, 824, 856, 1139
CviQI GTAC 4 cut(s) 997, 1073, 1122, 1200
DdeI CTNAG 7 cut(s) 47, 257, 459, 661, 865, 1206, 1246
DpnI GATC 5 cut(s) 207, 213, 330, 1029, 1137
DpnII GATC 5 cut(s) 205, 211, 328, 1027, 1135
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
Eco130I CCWWGG 3 cut(s) 405, 805, 1150
Eco24I GRGCYC 1 cut(s) 323
Eco32I GATATC 2 cut(s) 753, 910
Eco47I GGWCC 2 cut(s) 188, 1079
EcoRII CCWGG 3 cut(s) 675, 787, 1075
EcoRV GATATC 2 cut(s) 753, 910
EcoT14I CCWWGG 3 cut(s) 405, 805, 1150
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 3 cut(s) 405, 805, 1150
Esp3I CGTCTC 2 cut(s) 258, 659
FaeI CATG 7 cut(s) 64, 182, 292, 610, 827, 859, 1142
FalI AAGNNNNNCTT 4 cut(s) 644, 676, 1100, 1132
FatI CATG 7 cut(s) 60, 178, 288, 606, 823, 855, 1138
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 686, 704
FokI GGATG 4 cut(s) 181, 455, 530, 1133
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 686, 704
FspBI CTAG 2 cut(s) 143, 707
GlaI GCGC 1 cut(s) 468
GluI GCNGC 2 cut(s) 686, 704
GsuI CTGGAG 1 cut(s) 810
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 3 cut(s) 404, 473, 888
HapII CCGG 1 cut(s) 1227
HhaI GCGC 1 cut(s) 469
Hin1II CATG 7 cut(s) 64, 182, 292, 610, 827, 859, 1142
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 5 cut(s) 92, 182, 655, 979, 1052
HpaII CCGG 1 cut(s) 1227
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 1 cut(s) 612
Hpy188I TCNGA 7 cut(s) 42, 133, 216, 260, 328, 868, 1207
Hpy188III TCNNGA 6 cut(s) 61, 89, 186, 209, 512, 905
Hpy8I GTNNAC 1 cut(s) 612
HpyAV CCTTC 3 cut(s) 346, 1092, 1102
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 2 cut(s) 586, 873
HpyF10VI GCNNNNNNNGC 2 cut(s) 712, 852
HpyF3I CTNAG 7 cut(s) 47, 257, 459, 661, 865, 1206, 1246
HpySE526I ACGT 2 cut(s) 586, 873
Hsp92II CATG 7 cut(s) 64, 182, 292, 610, 827, 859, 1142
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 5 cut(s) 205, 211, 328, 1027, 1135
LmnI GCTCC 3 cut(s) 326, 700, 809
Lsp1109I GCAGC 2 cut(s) 697, 715
LweI GCATC 3 cut(s) 41, 855, 910
MabI ACCWGGT 1 cut(s) 1075
MaeI CTAG 2 cut(s) 143, 707
MaeII ACGT 2 cut(s) 586, 873
MaeIII GTNAC 4 cut(s) 296, 637, 988, 1096
MalI GATC 5 cut(s) 207, 213, 330, 1029, 1137
MboI GATC 5 cut(s) 205, 211, 328, 1027, 1135
MboII GAAGA 4 cut(s) 566, 664, 1025, 1031
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 8 cut(s) 121, 398, 448, 624, 647, 716, 769, 1016
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 3 cut(s) 86, 176, 664
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 3 cut(s) 345, 768, 783
MslI CAYNNNNRTG 1 cut(s) 1091
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 688
MspI CCGG 1 cut(s) 1227
MspR9I CCNGG 3 cut(s) 677, 789, 1077
MunI CAATTG 1 cut(s) 716
Mva1269I GAATGC 1 cut(s) 758
MvaI CCWGG 3 cut(s) 677, 789, 1077
MwoI GCNNNNNNNGC 2 cut(s) 712, 852
NdeII GATC 5 cut(s) 205, 211, 328, 1027, 1135
NlaIII CATG 7 cut(s) 64, 182, 292, 610, 827, 859, 1142
NlaIV GGNNCC 4 cut(s) 190, 322, 1034, 1114
NmuCI GTSAC 2 cut(s) 296, 1096
NspI RCATGY 1 cut(s) 292
PagI TCATGA 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 1180
PctI GAATGC 1 cut(s) 758
PfeI GAWTC 2 cut(s) 979, 1052
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 2 cut(s) 687, 705
PleI GAGTC 3 cut(s) 86, 176, 663
PpsI GAGTC 3 cut(s) 86, 176, 663
PsiI TTATAA 2 cut(s) 453, 629
Psp6I CCWGG 3 cut(s) 675, 787, 1075
PspGI CCWGG 3 cut(s) 675, 787, 1075
PspN4I GGNNCC 4 cut(s) 190, 322, 1034, 1114
PspPI GGNCC 2 cut(s) 188, 1079
PsrI GAACNNNNNNTAC 2 cut(s) 1105, 1137
PstI CTGCAG 1 cut(s) 1072
PstNI CAGNNNCTG 3 cut(s) 214, 264, 1076
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 4 cut(s) 998, 1074, 1123, 1201
RsaNI GTAC 4 cut(s) 997, 1073, 1122, 1200
RseI CAYNNNNRTG 1 cut(s) 1091
SaqAI TTAA 3 cut(s) 345, 768, 783
SatI GCNGC 2 cut(s) 686, 704
Sau3AI GATC 5 cut(s) 205, 211, 328, 1027, 1135
Sau96I GGNCC 2 cut(s) 188, 1079
SchI GAGTC 3 cut(s) 86, 176, 664
ScrFI CCNGG 3 cut(s) 677, 789, 1077
SduI GDGCHC 1 cut(s) 323
SexAI ACCWGGT 1 cut(s) 1075
SfaNI GCATC 3 cut(s) 41, 855, 910
SfcI CTRYAG 1 cut(s) 1068
SinI GGWCC 2 cut(s) 188, 1079
SmiMI CAYNNNNRTG 1 cut(s) 1091
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 8 cut(s) 121, 398, 448, 624, 647, 716, 769, 1016
SsiI CCGC 1 cut(s) 1004
SspMI CTAG 2 cut(s) 143, 707
StyD4I CCNGG 3 cut(s) 675, 787, 1075
StyI CCWWGG 3 cut(s) 405, 805, 1150
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 2 cut(s) 589, 876
TaqI TCGA 5 cut(s) 88, 138, 525, 849, 904
TaqII GACCGA 1 cut(s) 284
TasI AATT 8 cut(s) 121, 398, 448, 624, 647, 716, 769, 1016
TatI WGTACW 2 cut(s) 1121, 1199
TfiI GAWTC 2 cut(s) 979, 1052
Tru1I TTAA 3 cut(s) 345, 768, 783
Tru9I TTAA 3 cut(s) 345, 768, 783
TseFI GTSAC 2 cut(s) 296, 1096
TseI GCWGC 2 cut(s) 685, 703
Tsp45I GTSAC 2 cut(s) 296, 1096
TspDTI ATGAA 2 cut(s) 77, 831
TspGWI ACGGA 4 cut(s) 240, 346, 683, 1062
VpaK11BI GGWCC 2 cut(s) 188, 1079
XapI RAATTY 1 cut(s) 1016
XceI RCATGY 1 cut(s) 292
XspI CTAG 2 cut(s) 143, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.