FvH4_4g08050

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001253
Physical Location & Seq
Forward (+)
7652937 .. 7660185
7249 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08050.t3

Sequence Viewer

Length: 2673 bp
ATGGAGGATTTGCCTCCGCCGCCTCCTGTCGTACCACCCAATGGGAAGCCGGAAGTCGTAGCTCTGGCTCCTCCTAAGCACTCTATTATGGTTAGGCCACGTGGGGGTGGAACTACAGGGCGCCGCATACAATTGAGCACTAACCACTTCAAAGTTTCTGTGAAGAATCCAGATGCTGTGTTTTACCAGTACTGTGTTCTGATAACTTATGAAGATAACAGGCCTGTTGAAGGCATGAGAATTGGGAGAAAGCTGGTGGAGAAGCTCTATCAAACATACTCTTCAGAGTTTGGAGGTAAAAAGTTTGCATATGATGGGGAGAAAGCTTTGTACACAGTCGGTCCTCTCCCACAAAACAAGTTTGAGTTCACTGTTGTTCTGGAGGAGTCATTTGCAAAGAGCAGTGAAAACGGGAAGTCTGGTGAGACTGAAAAAAGAATGAAACGCTGTTCCAATCGCTCTAAATCTTTCAATGTAGAGATAAGTTATGCTGCCAAAATACCTCTCAAATCAATTGCTCTTGCCCTTCAAGGAGCTGAAGTAGACAACACTCAGGATACATTGAGAGTGCTTGATATTATTCTACGGCAGAAAGCAGCTAAGATGGGATGCCTTCTAGTACGACAGTCATTCTTCCATGATGACTCCAGGAGCTTTGTTGAGATTGGAGGAGGTGTGACTGGTGTCCGGGGATTTCATTCCAGTTTCCGTCCAACTCAGGGCGGCTTGTCCTTGAATATGGATGTATCTACAACAATGATTGTAACGCCTGGACCTGTTATTGATTTTCTGTTAACCAACCAGGGTGTGCGAGAACCCCGCTACATTGACTGGGTAAAGGCCAAAAGAATGCTGAAAAATATGAGGGTTACAACGAGACACCGTAACATGGAGTACAAAATCTCTGGGTTGAGCGAGAAGACCTGCTATAATCAGTATTTTACTCTGAAGTTAAGGAGTCATGATGGCACGAATGAGGAGGAGAATGTGGAGATTTCAGTGTATGAATATTTCGTCAAACACTGTGGCATAGAGCTCACTTATTCAAAAGACATGCCATGCCTTGATGTTGGCAAGCCAAAGAGGCCCACATATGTTCCAATTGAGCTATGTTCACTTATTTCACTACAAAGGTATACGAAAGCATTGTCTTCACTGCAGAGAGTGTCCTTAGTGGAAAAATCAAGGCAGAAGCCTCTGGAGAGAATAAAAAGTGTGACTGATGCTTTACGAAATTACAAATATGATGAAGATCCTGTCCTTGCTGAATGTGGTATATTTATAGAGAAGCAACTGATTCAAATGGACGGCCGCATTCTTGAGACTCCAAAGTTAAAGGTAGGTAACAGTGAGGACATGATGCCCTTTAAGGGACGGTGGAACTTCAAAGGAAAGTCATTTTTGGATCCTAGACGTATTGACTCTTGGCTAGTTGTCAACTTCTCTGGACGCTGTGACATTAGTCAAATCTCTCGGGAGCTTATCAATGTCGGGAAGAAGACTGGAATTCATATGGAGCGCCCCAAAACTCTTATCGAGGAAGATCCGCGAGCTGAAAGACTAGGACCTGTTGCAAGAGTCGACAAGATGTTTGAACAGATTCAGGCTAAGCTCCAAGAACCACCTGAGTTCATTCTCTGTGTCATACCAAAGAAAGGTTCCGATATCTATGGGCCTTGGAAGAAAAAAGCTCTGGTAGACTTTGGGATTCCAACACAATGTATTTCTCCACCCAAGCTGAGCGATCCATACCTGACTAATGTCCTAATGAAAATCAACACTAAGCTTGGAGGAATAAATTCTCTGTTGGCTCTGGAGCACTGCTCACGTGTTCCGCTTATAAAAGATACTCCTACAATGATTTTGGGGATGGATGTCTCGCATGGTTCTCCCGGACGATCAGATGTTCCTTCAGTTGCTGCGGTTGTTGGCTCTCGTAATTGGCCTCTTATATCAAGGTACAGAGCAGCTGTTAGAACACAATCTCCTAAGGTGGAGATGATTGATGGTCTATACAAGCCACTTCCAAATGGAGATGATGATGGTATTATCAGGGAACTTCTTCTGGACTTCTATAAGACAAGCCAAGGACGCAAACCAACTCAGATTATTGTTTTCAGGGATGGAGTCAGTGAATCACAGTTTAATCAAGTTTTGAACATCGAGCTGGATCAAATTGTAAAGGCTTACCAGCACCTTGGGGAGGAAAATGTTCCAAAGTTCACTCTCATTATAGCTCAGAAGAATCATCACACAAAGCTATTCCAATCTAATAGCCCCGATAATGTTCCACCAGGGACAGTTGTTGACACAAAAATCGTGCATCCAAGGATCTATGATTTCTACATGTGTTCTCAGGCTGGCATGATTGGGACTTCAAGGCCAGCGCACTATCATGTCTTGCTTGATGAGATTGGCTTTTCCCCTGATGACTTGCAGAATCTGATTCACTCCCTTTCTTATGTGTACCAAAGGAGCTGTACAGCAATATCCATTGTGGCACCCATATGCTATGCGCACCTTGCTGCAGCACAAGTGGGGCAGTTTATGAAGTTTGAAGATCTCTCAGAAACTTCATCAGCCAAAGGTAGTGTCACAACATCAGAGAGCATCCCAGTTCCAGAGCTCCCTAGGCTTCATGACAAGGTCCAGGGCTCCATGTTCTTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

891

Amino Acids

100.13

Weight (kDa)

9.04

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 41 - 194 2.5e-30 N-terminal domain of argonaute
ArgoL1 PF08699 206 - 254 1.4e-17 Argonaute linker 1 domain
PAZ PF02170 260 - 390 4.9e-29 PAZ domain
ArgoL2 PF16488 400 - 445 1.4e-10 Argonaute linker 2 domain
ArgoMid PF16487 453 - 511 4.8e-06 Mid domain of argonaute
Piwi PF02171 543 - 850 3e-105 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1841
Acc16I TGCGCA 1 cut(s) 2517
Acc36I ACCTGC 1 cut(s) 932
AccB1I GGYRCC 2 cut(s) 120, 2500
AccB7I CCANNNNNTGG 1 cut(s) 41
AccI GTMKAC 4 cut(s) 543, 1136, 1581, 1698
AccII CGCG 1 cut(s) 1549
AciI CCGC 9 cut(s) 17, 20, 124, 723, 820, 1312, 1547, 1835, 1922
AclWI GGATC 7 cut(s) 1247, 1400, 1413, 1538, 1739, 2178, 2339
AcoI YGGCCR 1 cut(s) 1309
AcsI RAATTY 2 cut(s) 1506, 1798
AcuI CTGAAG 4 cut(s) 267, 558, 968, 1896
AcvI CACGTG 2 cut(s) 101, 1829
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 8 cut(s) 33, 191, 332, 621, 896, 1961, 2468, 2482
AfiI CCNNNNNNNGG 8 cut(s) 41, 104, 230, 719, 889, 1370, 1655, 2203
AflIII ACRYGT 2 cut(s) 1828, 2346
AjnI CCWGG 5 cut(s) 647, 769, 801, 2293, 2649
AjuI GAANNNNNNNTTGG 2 cut(s) 1642, 1674
AloI GAACNNNNNNTCC 2 cut(s) 1969, 2001
Alw21I GWGCWC 4 cut(s) 140, 1038, 1821, 2628
Alw26I GTCTC 4 cut(s) 419, 871, 1316, 1882
AlwI GGATC 7 cut(s) 1247, 1400, 1413, 1538, 1739, 2178, 2339
AlwNI CAGNNNCTG 3 cut(s) 176, 1919, 2443
Ama87I CYCGRG 1 cut(s) 1473
AoxI GGCC 8 cut(s) 95, 221, 840, 1085, 1309, 1673, 1943, 2381
ApeKI GCWGC 6 cut(s) 491, 596, 1919, 1967, 2525, 2528
ApoI RAATTY 2 cut(s) 1506, 1798
ArsI GACNNNNNNTTYG 6 cut(s) 1133, 1165, 1574, 1606, 2577, 2609
Asp700I GAANNNNTTC 4 cut(s) 1599, 1798, 2061, 2211
AspA2I CCTAGG 1 cut(s) 2630
AspLEI GCGC 4 cut(s) 123, 1521, 2389, 2518
AspS9I GGNCC 6 cut(s) 341, 773, 1086, 1565, 1673, 2647
AsuC2I CCSGG 2 cut(s) 689, 1893
AsuHPI GGTGA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 1473
AvaII GGWCC 4 cut(s) 341, 773, 1565, 2647
AvrII CCTAGG 1 cut(s) 2630
AxyI CCTNAGG 1 cut(s) 1989
BamHI GGATCC 1 cut(s) 1405
BanI GGYRCC 2 cut(s) 120, 2500
BanII GRGCYC 3 cut(s) 1038, 2628, 2657
BbrPI CACGTG 2 cut(s) 101, 1829
BbsI GAAGAC 3 cut(s) 926, 1143, 1505
Bbv12I GWGCWC 4 cut(s) 140, 1038, 1821, 2628
BbvI GCAGC 6 cut(s) 478, 608, 1906, 1979, 2512, 2540
BccI CCATC 7 cut(s) 308, 598, 959, 1864, 2000, 2036, 2117
BceAI ACGGC 2 cut(s) 602, 1324
BciT130I CCWGG 5 cut(s) 649, 771, 803, 2295, 2651
BciVI GTATCC 1 cut(s) 550
BcnI CCSGG 2 cut(s) 689, 1893
BcoDI GTCTC 4 cut(s) 419, 871, 1316, 1882
BfaI CTAG 5 cut(s) 617, 1410, 1430, 1562, 2631
BfmI CTRYAG 3 cut(s) 114, 1157, 2526
BfoI RGCGCY 2 cut(s) 124, 1522
BfuAI ACCTGC 1 cut(s) 932
BfuI GTATCC 1 cut(s) 550
BglI GCCNNNNNGGC 1 cut(s) 1084
BglII AGATCT 1 cut(s) 2560
BlnI CCTAGG 1 cut(s) 2630
BlpI GCTNAGC 2 cut(s) 1608, 1739
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 7 cut(s) 649, 689, 771, 803, 1893, 2295, 2651
Bme18I GGWCC 4 cut(s) 341, 773, 1565, 2647
BmeT110I CYCGRG 1 cut(s) 1473
BmgT120I GGNCC 6 cut(s) 341, 773, 1086, 1565, 1673, 2647
BmiI GGNNCC 6 cut(s) 69, 122, 1407, 1660, 2502, 2656
BmrFI CCNGG 7 cut(s) 649, 689, 771, 803, 1893, 2295, 2651
BmrI ACTGGG 2 cut(s) 841, 2609
BmsI GCATC 6 cut(s) 163, 599, 1213, 1350, 2332, 2619
BmuI ACTGGG 2 cut(s) 841, 2609
BoxI GACNNNNGTC 3 cut(s) 683, 1461, 1760
BpiI GAAGAC 3 cut(s) 926, 1143, 1505
BplI GAGNNNNNCTC 2 cut(s) 1808, 1840
BpmI CTGGAG 4 cut(s) 401, 631, 1220, 1835
Bpu10I CCTNAGC 1 cut(s) 75
Bpu1102I GCTNAGC 2 cut(s) 1608, 1739
BpuEI CTTGAG 1 cut(s) 1340
BpuMI CCSGG 2 cut(s) 689, 1893
BsaAI YACGTR 2 cut(s) 101, 1829
BsaBI GATNNNNATC 1 cut(s) 1251
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 9 cut(s) 688, 802, 1676, 2086, 2197, 2294, 2327, 2630, 2650
BsaXI ACNNNNNCTCC 6 cut(s) 525, 555, 660, 690, 1969, 1999
Bsc4I CCNNNNNNNGG 8 cut(s) 41, 104, 230, 719, 889, 1370, 1655, 2203
Bse1I ACTGG 6 cut(s) 187, 685, 702, 836, 1507, 2615
Bse21I CCTNAGG 1 cut(s) 1989
Bse8I GATNNNNATC 1 cut(s) 1251
BseBI CCWGG 5 cut(s) 649, 771, 803, 2295, 2651
BseDI CCNNGG 9 cut(s) 688, 802, 1676, 2086, 2197, 2294, 2327, 2630, 2650
BseGI GGATG 7 cut(s) 614, 748, 1875, 1879, 2128, 2323, 2610
BseJI GATNNNNATC 1 cut(s) 1251
BseLI CCNNNNNNNGG 8 cut(s) 41, 104, 230, 719, 889, 1370, 1655, 2203
BseMII CTCAG 8 cut(s) 566, 731, 1617, 1730, 2117, 2252, 2369, 2580
BseNI ACTGG 6 cut(s) 187, 685, 702, 836, 1507, 2615
BseRI GAGGAG 5 cut(s) 60, 398, 684, 992, 995
BseX3I CGGCCG 1 cut(s) 1309
BseXI GCAGC 6 cut(s) 478, 608, 1906, 1979, 2512, 2540
Bsh1236I CGCG 1 cut(s) 1549
Bsh1285I CGRYCG 1 cut(s) 1312
BshFI GGCC 8 cut(s) 97, 223, 842, 1087, 1311, 1675, 1945, 2383
BshNI GGYRCC 2 cut(s) 120, 2500
BsiEI CGRYCG 1 cut(s) 1312
BsiHKAI GWGCWC 4 cut(s) 140, 1038, 1821, 2628
BsiHKCI CYCGRG 1 cut(s) 1473
BsiSI CCGG 3 cut(s) 50, 688, 1893
BslFI GGGAC 3 cut(s) 1386, 2311, 2386
BslI CCNNNNNNNGG 8 cut(s) 41, 104, 230, 719, 889, 1370, 1655, 2203
BsmAI GTCTC 4 cut(s) 419, 871, 1316, 1882
BsmFI GGGAC 3 cut(s) 1386, 2311, 2386
BsmI GAATGC 2 cut(s) 855, 1314
BsnI GGCC 8 cut(s) 97, 223, 842, 1087, 1311, 1675, 1945, 2383
BsoBI CYCGRG 1 cut(s) 1473
Bsp1286I GDGCHC 5 cut(s) 140, 1038, 1821, 2628, 2657
Bsp1407I TGTACA 2 cut(s) 330, 2480
Bsp143I GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
Bsp1720I GCTNAGC 2 cut(s) 1608, 1739
BspACI CCGC 9 cut(s) 17, 20, 124, 723, 820, 1312, 1547, 1835, 1922
BspANI GGCC 8 cut(s) 97, 223, 842, 1087, 1311, 1675, 1945, 2383
BspCNI CTCAG 8 cut(s) 565, 730, 1618, 1731, 2116, 2251, 2368, 2579
BspFNI CGCG 1 cut(s) 1549
BspHI TCATGA 2 cut(s) 961, 2638
BspLI GGNNCC 6 cut(s) 69, 122, 1407, 1660, 2502, 2656
BspMAI CTGCAG 2 cut(s) 1161, 2530
BspMI ACCTGC 1 cut(s) 932
BspPI GGATC 7 cut(s) 1247, 1400, 1413, 1538, 1739, 2178, 2339
BspT107I GGYRCC 2 cut(s) 120, 2500
BsrGI TGTACA 2 cut(s) 330, 2480
BsrI ACTGG 6 cut(s) 187, 685, 702, 836, 1507, 2615
BssECI CCNNGG 9 cut(s) 688, 802, 1676, 2086, 2197, 2294, 2327, 2630, 2650
BssMI GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
BssNAI GTATAC 1 cut(s) 1137
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 5 cut(s) 1676, 2086, 2197, 2327, 2630
Bst1107I GTATAC 1 cut(s) 1137
Bst2UI CCWGG 5 cut(s) 649, 771, 803, 2295, 2651
Bst6I CTCTTC 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 121
BstAUI TGTACA 2 cut(s) 330, 2480
BstBAI YACGTR 2 cut(s) 101, 1829
BstC8I GCNNGC 4 cut(s) 1076, 1551, 2362, 2385
BstENI CCTNNNNNAGG 2 cut(s) 228, 2201
BstF5I GGATG 7 cut(s) 614, 748, 1875, 1879, 2128, 2323, 2610
BstFNI CGCG 1 cut(s) 1549
BstH2I RGCGCY 2 cut(s) 124, 1522
BstHHI GCGC 4 cut(s) 123, 1521, 2389, 2518
BstKTI GATC 8 cut(s) 1255, 1408, 1546, 1747, 1901, 2173, 2334, 2563
BstMAI GTCTC 4 cut(s) 419, 871, 1316, 1882
BstMBI GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
BstMCI CGRYCG 1 cut(s) 1312
BstMWI GCNNNNNNNGC 5 cut(s) 19, 1084, 2091, 2522, 2632
BstNI CCWGG 5 cut(s) 649, 771, 803, 2295, 2651
BstNSI RCATGY 2 cut(s) 1057, 2350
BstPAI GACNNNNGTC 3 cut(s) 683, 1461, 1760
BstSCI CCNGG 7 cut(s) 647, 687, 769, 801, 1891, 2293, 2649
BstSFI CTRYAG 3 cut(s) 114, 1157, 2526
BstUI CGCG 1 cut(s) 1549
BstV1I GCAGC 6 cut(s) 478, 608, 1906, 1979, 2512, 2540
BstV2I GAAGAC 3 cut(s) 926, 1143, 1505
BstX2I RGATCY 5 cut(s) 1252, 1405, 1543, 2331, 2560
BstXI CCANNNNNNTGG 1 cut(s) 2198
BstYI RGATCY 5 cut(s) 1252, 1405, 1543, 2331, 2560
BstZ17I GTATAC 1 cut(s) 1137
BstZI CGGCCG 1 cut(s) 1309
Bsu36I CCTNAGG 1 cut(s) 1989
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 8 cut(s) 97, 223, 842, 1087, 1311, 1675, 1945, 2383
BtsCI GGATG 7 cut(s) 614, 748, 1875, 1879, 2128, 2323, 2610
BtsI GCAGTG 3 cut(s) 409, 1154, 1819
BtsIMutI CAGTG 8 cut(s) 369, 409, 1005, 1021, 1154, 1354, 1819, 2137
BveI ACCTGC 1 cut(s) 932
Cac8I GCNNGC 4 cut(s) 1076, 1551, 2362, 2385
CaiI CAGNNNCTG 3 cut(s) 176, 1919, 2443
CciI TCATGA 2 cut(s) 961, 2638
CfoI GCGC 4 cut(s) 123, 1521, 2389, 2518
Cfr13I GGNCC 6 cut(s) 341, 773, 1086, 1565, 1673, 2647
CseI GACGC 2 cut(s) 1458, 2100
Csp6I GTAC 8 cut(s) 32, 190, 331, 620, 895, 1960, 2467, 2481
CspCI CAANNNNNGTGG 2 cut(s) 1006, 1041
CviQI GTAC 8 cut(s) 32, 190, 331, 620, 895, 1960, 2467, 2481
DinI GGCGCC 1 cut(s) 122
DpnI GATC 8 cut(s) 1254, 1407, 1545, 1746, 1900, 2172, 2333, 2562
DpnII GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
EaeI YGGCCR 1 cut(s) 1309
EagI CGGCCG 1 cut(s) 1309
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
EciI GGCGGA 1 cut(s) 6
Ecl136II GAGCTC 2 cut(s) 1036, 2626
EclXI CGGCCG 1 cut(s) 1309
Eco130I CCWWGG 5 cut(s) 1676, 2086, 2197, 2327, 2630
Eco147I AGGCCT 1 cut(s) 223
Eco24I GRGCYC 3 cut(s) 1038, 2628, 2657
Eco32I GATATC 1 cut(s) 1666
Eco47I GGWCC 4 cut(s) 341, 773, 1565, 2647
Eco52I CGGCCG 1 cut(s) 1309
Eco53kI GAGCTC 2 cut(s) 1036, 2626
Eco57I CTGAAG 4 cut(s) 267, 558, 968, 1896
Eco72I CACGTG 2 cut(s) 101, 1829
Eco81I CCTNAGG 1 cut(s) 1989
Eco88I CYCGRG 1 cut(s) 1473
EcoICRI GAGCTC 2 cut(s) 1036, 2626
EcoNI CCTNNNNNAGG 2 cut(s) 228, 2201
EcoO109I RGGNCCY 1 cut(s) 1565
EcoRI GAATTC 1 cut(s) 1506
EcoRII CCWGG 5 cut(s) 647, 769, 801, 2293, 2649
EcoRV GATATC 1 cut(s) 1666
EcoT14I CCWWGG 5 cut(s) 1676, 2086, 2197, 2327, 2630
EcoT38I GRGCYC 3 cut(s) 1038, 2628, 2657
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
ErhI CCWWGG 5 cut(s) 1676, 2086, 2197, 2327, 2630
FaqI GGGAC 3 cut(s) 1386, 2311, 2386
FauI CCCGC 1 cut(s) 827
FauNDI CATATG 4 cut(s) 310, 1093, 1512, 2507
FblI GTMKAC 4 cut(s) 543, 1136, 1581, 1698
FokI GGATG 7 cut(s) 621, 755, 1882, 1886, 2135, 2310, 2597
FriOI GRGCYC 3 cut(s) 1038, 2628, 2657
FspAI RTGCGCAY 1 cut(s) 2517
FspBI CTAG 5 cut(s) 617, 1410, 1430, 1562, 2631
FspI TGCGCA 1 cut(s) 2517
GlaI GCGC 4 cut(s) 122, 1520, 2388, 2517
GsuI CTGGAG 4 cut(s) 401, 631, 1220, 1835
HaeII RGCGCY 2 cut(s) 124, 1522
HaeIII GGCC 8 cut(s) 97, 223, 842, 1087, 1311, 1675, 1945, 2383
HapII CCGG 3 cut(s) 50, 688, 1893
HgaI GACGC 2 cut(s) 1458, 2100
HhaI GCGC 4 cut(s) 123, 1521, 2389, 2518
Hin1I GRCGYC 1 cut(s) 121
Hin6I GCGC 4 cut(s) 121, 1519, 2387, 2516
HinP1I GCGC 4 cut(s) 121, 1519, 2387, 2516
HincII GTYRAC 4 cut(s) 795, 1438, 1582, 2308
HindII GTYRAC 4 cut(s) 795, 1438, 1582, 2308
HindIII AAGCTT 2 cut(s) 324, 1784
HpaI GTTAAC 1 cut(s) 795
HpaII CCGG 3 cut(s) 50, 688, 1893
HphI GGTGA 1 cut(s) 434
HpyAV CCTTC 4 cut(s) 224, 536, 623, 1920
HpyCH4IV ACGT 3 cut(s) 100, 1414, 1828
HpyCH4V TGCA 7 cut(s) 308, 395, 1159, 1574, 2323, 2437, 2528
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 1084, 2091, 2522, 2632
HpySE526I ACGT 3 cut(s) 100, 1414, 1828
Hsp92I GRCGYC 1 cut(s) 121
HspAI GCGC 4 cut(s) 121, 1519, 2387, 2516
KasI GGCGCC 1 cut(s) 120
KspAI GTTAAC 1 cut(s) 795
Kzo9I GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
Lsp1109I GCAGC 6 cut(s) 478, 608, 1906, 1979, 2512, 2540
LweI GCATC 6 cut(s) 163, 599, 1213, 1350, 2332, 2619
MaeI CTAG 5 cut(s) 617, 1410, 1430, 1562, 2631
MaeII ACGT 3 cut(s) 100, 1414, 1828
MaeIII GTNAC 8 cut(s) 676, 763, 868, 884, 1216, 1343, 1454, 2593
MalI GATC 8 cut(s) 1254, 1407, 1545, 1746, 1900, 2172, 2333, 2562
MboI GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
MfeI CAATTG 3 cut(s) 131, 513, 1101
MflI RGATCY 5 cut(s) 1252, 1405, 1543, 2331, 2560
MhlI GDGCHC 5 cut(s) 140, 1038, 1821, 2628, 2657
MluCI AATT 9 cut(s) 131, 240, 513, 1101, 1234, 1506, 1798, 1939, 2175
Mly113I GGCGCC 1 cut(s) 121
MlyI GAGTC 7 cut(s) 395, 638, 967, 1318, 1415, 1587, 2136
MmeI TCCRAC 2 cut(s) 737, 1736
MroXI GAANNNNTTC 4 cut(s) 1599, 1798, 2061, 2211
MseI TTAA 5 cut(s) 794, 953, 1334, 1368, 2145
MslI CAYNNNNRTG 2 cut(s) 2394, 2506
MspA1I CMGCKG 1 cut(s) 1970
MspI CCGG 3 cut(s) 50, 688, 1893
MspR9I CCNGG 7 cut(s) 649, 689, 771, 803, 1893, 2295, 2651
MunI CAATTG 3 cut(s) 131, 513, 1101
Mva1269I GAATGC 2 cut(s) 855, 1314
MvaI CCWGG 5 cut(s) 649, 771, 803, 2295, 2651
MvnI CGCG 1 cut(s) 1549
MwoI GCNNNNNNNGC 5 cut(s) 19, 1084, 2091, 2522, 2632
NarI GGCGCC 1 cut(s) 121
NciI CCSGG 2 cut(s) 689, 1893
NdeI CATATG 4 cut(s) 310, 1093, 1512, 2507
NdeII GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
NlaIV GGNNCC 6 cut(s) 69, 122, 1407, 1660, 2502, 2656
NmuCI GTSAC 4 cut(s) 676, 1216, 1454, 2593
NsbI TGCGCA 1 cut(s) 2517
NspI RCATGY 2 cut(s) 1057, 2350
PagI TCATGA 2 cut(s) 961, 2638
PceI AGGCCT 1 cut(s) 223
PciI ACATGT 1 cut(s) 2346
PctI GAATGC 2 cut(s) 855, 1314
PdmI GAANNNNTTC 4 cut(s) 1599, 1798, 2061, 2211
PfeI GAWTC 8 cut(s) 166, 1297, 1600, 1708, 2135, 2245, 2440, 2446
PflFI GACNNNGTC 1 cut(s) 2645
PflMI CCANNNNNTGG 1 cut(s) 41
PfoI TCCNGGA 2 cut(s) 647, 1891
PleI GAGTC 7 cut(s) 394, 638, 966, 1318, 1415, 1586, 2135
PluTI GGCGCC 1 cut(s) 124
PmaCI CACGTG 2 cut(s) 101, 1829
PmlI CACGTG 2 cut(s) 101, 1829
PpsI GAGTC 7 cut(s) 394, 638, 966, 1318, 1415, 1586, 2135
Ppu21I YACGTR 2 cut(s) 101, 1829
PpuMI RGGWCCY 1 cut(s) 1565
PscI ACATGT 1 cut(s) 2346
PshAI GACNNNNGTC 3 cut(s) 683, 1461, 1760
PsiI TTATAA 1 cut(s) 1841
Psp124BI GAGCTC 2 cut(s) 1038, 2628
Psp5II RGGWCCY 1 cut(s) 1565
Psp6I CCWGG 5 cut(s) 647, 769, 801, 2293, 2649
PspCI CACGTG 2 cut(s) 101, 1829
PspGI CCWGG 5 cut(s) 647, 769, 801, 2293, 2649
PspN4I GGNNCC 6 cut(s) 69, 122, 1407, 1660, 2502, 2656
PspPI GGNCC 6 cut(s) 341, 773, 1086, 1565, 1673, 2647
PspPPI RGGWCCY 1 cut(s) 1565
PstI CTGCAG 2 cut(s) 1161, 2530
PstNI CAGNNNCTG 3 cut(s) 176, 1919, 2443
PsuI RGATCY 5 cut(s) 1252, 1405, 1543, 2331, 2560
PsyI GACNNNGTC 1 cut(s) 2645
PvuII CAGCTG 1 cut(s) 1970
RsaI GTAC 8 cut(s) 33, 191, 332, 621, 896, 1961, 2468, 2482
RsaNI GTAC 8 cut(s) 32, 190, 331, 620, 895, 1960, 2467, 2481
RseI CAYNNNNRTG 2 cut(s) 2394, 2506
SacI GAGCTC 2 cut(s) 1038, 2628
SalI GTCGAC 1 cut(s) 1580
SaqAI TTAA 5 cut(s) 794, 953, 1334, 1368, 2145
Sau3AI GATC 8 cut(s) 1252, 1405, 1543, 1744, 1898, 2170, 2331, 2560
Sau96I GGNCC 6 cut(s) 341, 773, 1086, 1565, 1673, 2647
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 7 cut(s) 395, 638, 967, 1318, 1415, 1587, 2136
ScrFI CCNGG 7 cut(s) 649, 689, 771, 803, 1893, 2295, 2651
SduI GDGCHC 5 cut(s) 140, 1038, 1821, 2628, 2657
SfaNI GCATC 6 cut(s) 163, 599, 1213, 1350, 2332, 2619
SfcI CTRYAG 3 cut(s) 114, 1157, 2526
SfoI GGCGCC 1 cut(s) 122
SinI GGWCC 4 cut(s) 341, 773, 1565, 2647
SmiMI CAYNNNNRTG 2 cut(s) 2394, 2506
SmlI CTYRAG 1 cut(s) 1319
SmoI CTYRAG 1 cut(s) 1319
Sse9I AATT 9 cut(s) 131, 240, 513, 1101, 1234, 1506, 1798, 1939, 2175
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 9 cut(s) 17, 20, 124, 723, 820, 1312, 1547, 1835, 1922
SspDI GGCGCC 1 cut(s) 120
SspI AATATT 1 cut(s) 1010
SspMI CTAG 5 cut(s) 617, 1410, 1430, 1562, 2631
SstI GAGCTC 2 cut(s) 1038, 2628
StuI AGGCCT 1 cut(s) 223
StyD4I CCNGG 7 cut(s) 647, 687, 769, 801, 1891, 2293, 2649
StyI CCWWGG 5 cut(s) 1676, 2086, 2197, 2327, 2630
TaiI ACGT 3 cut(s) 103, 1417, 1831
TaqI TCGA 3 cut(s) 1536, 1581, 2163
TaqII GACCGA 1 cut(s) 329
TasI AATT 9 cut(s) 131, 240, 513, 1101, 1234, 1506, 1798, 1939, 2175
TatI WGTACW 4 cut(s) 189, 330, 894, 2480
TauI GCSGC 4 cut(s) 22, 126, 726, 1314
TfiI GAWTC 8 cut(s) 166, 1297, 1600, 1708, 2135, 2245, 2440, 2446
Tru1I TTAA 5 cut(s) 794, 953, 1334, 1368, 2145
Tru9I TTAA 5 cut(s) 794, 953, 1334, 1368, 2145
TscAI CASTG 8 cut(s) 376, 409, 1005, 1028, 1161, 1354, 1826, 2137
TseFI GTSAC 4 cut(s) 676, 1216, 1454, 2593
TseI GCWGC 6 cut(s) 491, 596, 1919, 1967, 2525, 2528
Tsp45I GTSAC 4 cut(s) 676, 1216, 1454, 2593
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 8 cut(s) 376, 409, 1005, 1028, 1161, 1354, 1826, 2137
Tth111I GACNNNGTC 1 cut(s) 2645
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 4 cut(s) 341, 773, 1565, 2647
XagI CCTNNNNNAGG 2 cut(s) 228, 2201
XapI RAATTY 2 cut(s) 1506, 1798
XceI RCATGY 2 cut(s) 1057, 2350
XmaJI CCTAGG 1 cut(s) 2630
XmiI GTMKAC 4 cut(s) 543, 1136, 1581, 1698
XmnI GAANNNNTTC 4 cut(s) 1599, 1798, 2061, 2211
XspI CTAG 5 cut(s) 617, 1410, 1430, 1562, 2631
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.