Rh2BG544600

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001253
Physical Location & Seq
Reverse (-)
75282746 .. 75284325
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG544600.1

Sequence Viewer

Length: 339 bp
ATGGCCTTACTCAAGAAGCCATTTTCTGGCAAGGCTTACAAGCACCACCAGAAGGTTGATGAGCTTCCAAAATTTACTGTGATTGTGGCTCAAAAGAACCATAATACAAAGCTATTCCAAGCTGGTTCTCCCCAGTATAATGTTCCACCAGTTGCGCCCATATGTTATGCGCACCTTGCTGCAGCCCAAGTAATGCAGTTTATGAAGTTTGAAGATCTCTCGGCAACTTCATCATCAGGAAGGGTCAGTGTCACTACATCAGAGAGTATCCCAGTGCCTGAGCTCCCTAGGCTTCATGAGAAGTTTCACTTGCTAATTTGGACAACTGCTAAGCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

112

Amino Acids

12.56

Weight (kDa)

9.76

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 26
AcsI RAATTY 1 cut(s) 71
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 26, 52
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 4 cut(s) 64, 112, 122, 283
AluI AGCT 4 cut(s) 64, 112, 122, 283
Alw21I GWGCWC 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 278
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 179, 182
ApoI RAATTY 1 cut(s) 71
AspA2I CCTAGG 1 cut(s) 287
AspLEI GCGC 3 cut(s) 157, 172, 336
AvrII CCTAGG 1 cut(s) 287
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 166, 194
BciVI GTATCC 1 cut(s) 278
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 278
BglII AGATCT 1 cut(s) 214
BisI GCNGC 2 cut(s) 180, 183
BlnI CCTAGG 1 cut(s) 287
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 2 cut(s) 181, 184
BmrI ACTGGG 2 cut(s) 127, 266
BmuI ACTGGG 2 cut(s) 127, 266
Bpu10I CCTNAGC 1 cut(s) 279
Bpu1102I GCTNAGC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 52
Bse1I ACTGG 3 cut(s) 133, 149, 272
BseDI CCNNGG 1 cut(s) 287
BseLI CCNNNNNNNGG 2 cut(s) 26, 52
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 3 cut(s) 133, 149, 272
BseXI GCAGC 2 cut(s) 166, 194
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 26, 52
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 271
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 184
BsrI ACTGG 3 cut(s) 133, 149, 272
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 279, 330
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 3 cut(s) 157, 172, 336
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 176, 289
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 166, 194
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 253, 279
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 295
CfoI GCGC 3 cut(s) 157, 172, 336
CviAII CATG 1 cut(s) 296
DdeI CTNAG 2 cut(s) 279, 330
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 285
Eco47III AGCGCT 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 1 cut(s) 299
FaiI YATR 7 cut(s) 102, 138, 161, 163, 168, 203, 297
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 1 cut(s) 295
FauNDI CATATG 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 180, 183
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 180, 183
FspAI RTGCGCAY 1 cut(s) 171
FspBI CTAG 1 cut(s) 288
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 3 cut(s) 156, 171, 335
GluI GCNGC 2 cut(s) 180, 183
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 3 cut(s) 157, 172, 336
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 3 cut(s) 155, 170, 334
HinP1I GCGC 3 cut(s) 155, 170, 334
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 3 cut(s) 13, 237, 296
HpyAV CCTTC 2 cut(s) 46, 234
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 182, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 289
HpyF3I CTNAG 2 cut(s) 279, 330
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 3 cut(s) 155, 170, 334
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 8 cut(s) 12, 62, 108, 146, 162, 222, 285, 291
Lsp1109I GCAGC 2 cut(s) 166, 194
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 250
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 224
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 2 cut(s) 71, 315
MwoI GCNNNNNNNGC 2 cut(s) 176, 289
NdeI CATATG 1 cut(s) 161
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 299
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 250
NsbI TGCGCA 1 cut(s) 171
PagI TCATGA 1 cut(s) 295
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 2 cut(s) 181, 184
Psp124BI GAGCTC 1 cut(s) 285
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 214
SacI GAGCTC 1 cut(s) 285
SatI GCNGC 2 cut(s) 180, 183
Sau3AI GATC 1 cut(s) 214
SduI GDGCHC 1 cut(s) 285
SetI ASST 6 cut(s) 57, 66, 114, 124, 177, 285
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 71, 315
SspMI CTAG 1 cut(s) 288
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 79
TasI AATT 2 cut(s) 71, 315
TscAI CASTG 2 cut(s) 253, 279
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 179, 182
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 218, 219, 284
TspRI CASTG 2 cut(s) 253, 279
Van91I CCANNNNNTGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 71
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.