FvH4_6g42040

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001253
Physical Location & Seq
Reverse (-)
32886132 .. 32897087
10956 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42040.t3

Sequence Viewer

Length: 2670 bp
ATGGAGGATTTGCCTCCGCCACCTCCTATCATACCGCCCAATGTGAAGCCAGAAGTTGTGGCTCAAGCTCCTCCCAAGCACTCTATTATGGTCAGGCCACGTGGGAGTGGAACTACAGGGCGGCGCATAGCATTGAGCACTAACCACTTCAAAGTTTCGGTGAAGAATCCAGATGCTGTGTTTTACCAGTACTGTGTTCTCATAACTTATGAAGATAAGAGACCTGTTGAAGGCATGGGAATTGGGAGAAAGCTGGTGGATAAGCTTTATCAGACATACACTTCAGAGTTTGCTGGTAAGAAGTTTGCTTATGATGGGGAGAAAGCTTTGTACACAGTTGGTCCTCTCCCGCGCAACAAGCTTGAGTTCACAGTCATCCTGGATGAGTCATTTGCAAAAAGTGAAACTGGGAAGTCTGGTGAGACTGACAAAAGGATGAAACGCTGTTCCACTCGATCTAAATCTTTCAATATAGAGATAAGTTATGCTGCCAAAATACCTCTCAAGTCTATTTCTCTTGCCCTTCAAGGAGCTGAAGTAGACAACACTCAGGATGCATTGAGAGTTCTTGATATTATCCTACGGCAGAAAGCAGCTAAGATGGGATGCCTTCTAGTACGACAGTCATTCTTCCATGATGACTCCAGGAATTTTGTTGAGATTGGAGGAGGTGTGACTGGTATCCGGGGATTTCATTCCAGTTTCCGTCCAACTCAGGGTGGCTTGTCCTTGAATATGGATGTATCTACAACAATGATTGTGACGCCTGGACCTGTTATTGATTTTCTGTTAACCAACCAGGGTGTAAAAGAACCCCGCTTCATTGACTGGGTAAAGGCCAAAAGAATGCTGAAAAATTTGAGGGTTACAACAAGGCACCGTAACATGGAGGGAAAAATCACTGGGTTGAGTGAGCAGACCTGCAATAATCAGACTTTTACTCTGAGGCTAAGGAGTGGTGATGGCACGAGTGAGGGGGAGACTGTGGAGATTACGGTGTTTGAATATTTTGTCAAACACTGCGGCATAGAGCTCACCTATTCTCAACACATGCCATGCGTTGATATTGGCAAGCCAAAGAAGCCTACTTATGTTCCAATTGAGCTGTGTTCACTTGTTTCACTACAAAGGTATACGAAAGCATTATCTTCCCTACAGAGAGCATCCTTAGTGGAAAAATCAAGGCAGAAGCCTCAGGAGAGAATAAAGAGTGTGACTGATGCTTTAAGAAATTATCGCTATGATGAGGATCCTGTGCTTGCTGAATGTGGTATATTTATAGAGAAGCAACTGGTTCAGATGGATGGCCATATTCTTGAGACTCCAAAGTTAAAGGTAGGTAACAATGAGGACATGTTGCCCTTTAAGGGACGATGGAACTTCAAGGGAAAGTCATTTTTGGATCCTACACGTATCAAGTCTTGGCTAGTTGTCAACTTCTCTGGACGCTGTGACATTAGTCAAATTTCTCGGGAGCTTATCAATGTTGGAAAGAAGACTGGAATCCAAATTGAGCGCCCCATAACTCTTATTGAGGAAGATCGGCGAGCTGAAAGACTAGGCCCTGTTGCTAGAGTAGACAAGATGTTTGAACAGATTCAGTCTAAGGTCCAAGGACCACCTAAGTTCATTCTCTGTGTCATACCAAAGAAAGGCTCTGATATCTATGGGCCTTGGAAGAAAAAGACTCTGGTTGACTTTGGCATTCCAACACAATGTATTGCCCCGCCCAAGCTTAGCGACCCATACCTGACTAATGTCCTTATGAAAATCAATACCAAGCTCGGAGGAATAAATTCTCTGTTGGCACTGGAGTTCTCCTCACGTGTTCCTCTTATAAAAGATACTCCTACAATGATTTTGGGGATGGATGTGTCTCATGGTTCTCCTGGCCGTTCAGATGTTCCTTCAGTTGCTGCAGTTGTTGGCTCTCGAAATTGGCCTCTTATATCAAGGTACAGAGCAGCTGTTAGAACACAATCTCCTAAGGTGGAGATGATTGATGGTCTATACAAGCCACTTCCAAATGGAAATGATGATGGTATTATCAGGGAACTGCTTCTGGACTTCTATAAGACAAGCAAAGGACGCAAGCCAACTCAGATGATTATTTTTAGGGATGGAGTGAGTGAATCACAGTTTAATCAAGTGTTGAACATCGAACTGGATCAAATTGTAAAGGCTTACCAGCACCTTGGGGAGGCTGATGTTCCAAAGTTCACTCTCATTATAGCTCAGAAGAATCATCACACAAAGCTATTTCAAGCTAATAGCCCTGATAATGTTCCACCAGGGACAGTTGTCGACACCAATATCGTGCATCCAAGGATCTATGATTTCTACATGTGTTCTCAGGCTGGCATGATTGGAACTTCTAGGCCAGCACACTATCATGTCTTGCTTGATGAGATCGGCTTTTCCCCTGATGACTTGCAGAACCTTATTCACTCCCTTTCTTATGTGTACCAAAGGAGCTGTACTGCAATATCCATTGTGGCACCGATATGCTATGCACACCTTGCTGCAGCACAAGTGGGGCAGTTCACGAAGTTTGAAGATCTCTCAGAGACTTCATCTGCAAAAGGCAGTGTCACAACATCAGAGAGCATCCCAGTTCCAGAGCTCCCTAGGCTCAATGAGAAGGTCCAGGGCTCCATGTTCTTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

890

Amino Acids

99.38

Weight (kDa)

9.23

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 41 - 194 3.8e-29 N-terminal domain of argonaute
ArgoL1 PF08699 206 - 254 2.2e-18 Argonaute linker 1 domain
PAZ PF02170 260 - 390 4.8e-28 PAZ domain
ArgoL2 PF16488 400 - 445 5.9e-08 Argonaute linker 2 domain
ArgoMid PF16487 454 - 507 1.2e-06 Mid domain of argonaute
Piwi PF02171 543 - 789 1.3e-74 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1838
Acc36I ACCTGC 1 cut(s) 929
AccB1I GGYRCC 2 cut(s) 876, 2497
AccI GTMKAC 4 cut(s) 540, 1133, 1578, 2304
AccII CGCG 1 cut(s) 352
AciI CCGC 7 cut(s) 17, 35, 121, 350, 817, 1023, 1727
AclWI GGATC 6 cut(s) 1244, 1257, 1397, 1410, 2175, 2336
AcoI YGGCCR 2 cut(s) 1306, 1891
AcsI RAATTY 4 cut(s) 649, 856, 1464, 1795
AcuI CTGAAG 3 cut(s) 267, 555, 1893
AcvI CACGTG 2 cut(s) 101, 1826
AcyI GRCGYC 1 cut(s) 764
AfaI GTAC 6 cut(s) 191, 332, 618, 1958, 2465, 2479
AfiI CCNNNNNNNGG 6 cut(s) 230, 716, 886, 1367, 1652, 2200
AflIII ACRYGT 4 cut(s) 1353, 1409, 1825, 2343
AjnI CCWGG 7 cut(s) 378, 644, 766, 798, 1888, 2290, 2646
AloI GAACNNNNNNTCC 2 cut(s) 1966, 1998
Alw21I GWGCWC 3 cut(s) 140, 1035, 2625
Alw26I GTCTC 6 cut(s) 214, 416, 974, 1313, 1881, 2561
AlwI GGATC 6 cut(s) 1244, 1257, 1397, 1410, 2175, 2336
AlwNI CAGNNNCTG 2 cut(s) 176, 1916
Ama87I CYCGRG 1 cut(s) 1470
AoxI GGCC 8 cut(s) 95, 837, 1306, 1561, 1670, 1891, 1940, 2378
ApeKI GCWGC 6 cut(s) 488, 593, 1916, 1964, 2522, 2525
ApoI RAATTY 4 cut(s) 649, 856, 1464, 1795
ArsI GACNNNNNNTTYG 2 cut(s) 1571, 1603
Asp700I GAANNNNTTC 3 cut(s) 1596, 1795, 2058
AspA2I CCTAGG 1 cut(s) 2627
AspLEI GCGC 3 cut(s) 126, 354, 1518
AspS9I GGNCC 7 cut(s) 341, 770, 1562, 1609, 1616, 1670, 2644
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 4 cut(s) 172, 431, 971, 1027
AvaI CYCGRG 1 cut(s) 1470
AvaII GGWCC 5 cut(s) 341, 770, 1609, 1616, 2644
AvrII CCTAGG 1 cut(s) 2627
AxyI CCTNAGG 2 cut(s) 1194, 1986
BalI TGGCCA 1 cut(s) 1308
BamHI GGATCC 2 cut(s) 1249, 1402
BanI GGYRCC 2 cut(s) 876, 2497
BanII GRGCYC 3 cut(s) 1035, 2625, 2654
BauI CACGAG 1 cut(s) 967
BbrPI CACGTG 2 cut(s) 101, 1826
BbsI GAAGAC 1 cut(s) 1502
Bbv12I GWGCWC 3 cut(s) 140, 1035, 2625
BbvI GCAGC 6 cut(s) 475, 605, 1903, 1976, 2509, 2537
BceAI ACGGC 2 cut(s) 599, 1878
BciT130I CCWGG 7 cut(s) 380, 646, 768, 800, 1890, 2292, 2648
BciVI GTATCC 1 cut(s) 692
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 6 cut(s) 214, 416, 974, 1313, 1881, 2561
BfaI CTAG 6 cut(s) 614, 1427, 1559, 1572, 2376, 2628
BfmI CTRYAG 4 cut(s) 114, 1154, 1917, 2523
BfoI RGCGCY 1 cut(s) 1519
BfuAI ACCTGC 1 cut(s) 929
BfuI GTATCC 1 cut(s) 692
BglII AGATCT 1 cut(s) 2557
BisI GCNGC 8 cut(s) 122, 489, 594, 1024, 1917, 1965, 2523, 2526
BlnI CCTAGG 1 cut(s) 2627
BlpI GCTNAGC 1 cut(s) 1736
BlsI GCNGC 8 cut(s) 123, 490, 595, 1025, 1918, 1966, 2524, 2527
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 8 cut(s) 380, 646, 686, 768, 800, 1890, 2292, 2648
Bme18I GGWCC 5 cut(s) 341, 770, 1609, 1616, 2644
BmeT110I CYCGRG 1 cut(s) 1470
BmgT120I GGNCC 7 cut(s) 341, 770, 1562, 1609, 1616, 1670, 2644
BmiI GGNNCC 5 cut(s) 878, 1251, 1404, 2499, 2653
BmrFI CCNGG 8 cut(s) 380, 646, 686, 768, 800, 1890, 2292, 2648
BmrI ACTGGG 4 cut(s) 417, 838, 912, 2606
BmsI GCATC 7 cut(s) 163, 544, 596, 1172, 1210, 2329, 2616
BmuI ACTGGG 4 cut(s) 417, 838, 912, 2606
BoxI GACNNNNGTC 3 cut(s) 1458, 1757, 2300
BpiI GAAGAC 1 cut(s) 1502
BplI GAGNNNNNCTC 2 cut(s) 1805, 1837
BpmI CTGGAG 2 cut(s) 628, 1832
Bpu10I CCTNAGC 1 cut(s) 950
Bpu1102I GCTNAGC 1 cut(s) 1736
BpuEI CTTGAG 4 cut(s) 48, 383, 488, 1337
BpuMI CCSGG 1 cut(s) 686
BsaAI YACGTR 3 cut(s) 101, 1412, 1826
BsaBI GATNNNNATC 2 cut(s) 460, 1248
BsaHI GRCGYC 1 cut(s) 764
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 9 cut(s) 685, 799, 1612, 1673, 2194, 2291, 2324, 2627, 2647
BsaXI ACNNNNNCTCC 6 cut(s) 522, 552, 657, 687, 1966, 1996
Bsc4I CCNNNNNNNGG 6 cut(s) 230, 716, 886, 1367, 1652, 2200
Bse21I CCTNAGG 2 cut(s) 1194, 1986
Bse8I GATNNNNATC 2 cut(s) 460, 1248
BseBI CCWGG 7 cut(s) 380, 646, 768, 800, 1890, 2292, 2648
BseDI CCNNGG 9 cut(s) 685, 799, 1612, 1673, 2194, 2291, 2324, 2627, 2647
BseJI GATNNNNATC 2 cut(s) 460, 1248
BseLI CCNNNNNNNGG 6 cut(s) 230, 716, 886, 1367, 1652, 2200
BseMII CTCAG 8 cut(s) 563, 728, 935, 1208, 2114, 2249, 2366, 2577
BseRI GAGGAG 3 cut(s) 60, 681, 1810
BseXI GCAGC 6 cut(s) 475, 605, 1903, 1976, 2509, 2537
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 8 cut(s) 97, 839, 1308, 1563, 1672, 1893, 1942, 2380
BshNI GGYRCC 2 cut(s) 876, 2497
BsiHKAI GWGCWC 3 cut(s) 140, 1035, 2625
BsiHKCI CYCGRG 1 cut(s) 1470
BsiSI CCGG 1 cut(s) 685
BslFI GGGAC 2 cut(s) 1383, 2308
BslI CCNNNNNNNGG 6 cut(s) 230, 716, 886, 1367, 1652, 2200
BsmAI GTCTC 6 cut(s) 214, 416, 974, 1313, 1881, 2561
BsmFI GGGAC 2 cut(s) 1383, 2308
BsmI GAATGC 2 cut(s) 852, 1704
BsnI GGCC 8 cut(s) 97, 839, 1308, 1563, 1672, 1893, 1942, 2380
Bso31I GGTCTC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 1470
Bsp1286I GDGCHC 4 cut(s) 140, 1035, 2625, 2654
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
Bsp1720I GCTNAGC 1 cut(s) 1736
BspACI CCGC 7 cut(s) 17, 35, 121, 350, 817, 1023, 1727
BspANI GGCC 8 cut(s) 97, 839, 1308, 1563, 1672, 1893, 1942, 2380
BspCNI CTCAG 8 cut(s) 562, 727, 936, 1207, 2113, 2248, 2365, 2576
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 5 cut(s) 878, 1251, 1404, 2499, 2653
BspMAI CTGCAG 2 cut(s) 1921, 2527
BspMI ACCTGC 1 cut(s) 929
BspPI GGATC 6 cut(s) 1244, 1257, 1397, 1410, 2175, 2336
BspT107I GGYRCC 2 cut(s) 876, 2497
BspTNI GGTCTC 1 cut(s) 214
BsrGI TGTACA 1 cut(s) 330
BssECI CCNNGG 9 cut(s) 685, 799, 1612, 1673, 2194, 2291, 2324, 2627, 2647
BssMI GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
BssNAI GTATAC 1 cut(s) 1134
BssNI GRCGYC 1 cut(s) 764
BssSI CACGAG 1 cut(s) 967
BssT1I CCWWGG 5 cut(s) 1612, 1673, 2194, 2324, 2627
Bst1107I GTATAC 1 cut(s) 1134
Bst2BI CACGAG 1 cut(s) 967
Bst2UI CCWGG 7 cut(s) 380, 646, 768, 800, 1890, 2292, 2648
Bst4CI ACNGT 9 cut(s) 194, 337, 373, 624, 881, 985, 997, 2139, 2299
BstACI GRCGYC 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 2519
BstAUI TGTACA 1 cut(s) 330
BstBAI YACGTR 3 cut(s) 101, 1412, 1826
BstC8I GCNNGC 6 cut(s) 1073, 1260, 1548, 2093, 2359, 2382
BstENI CCTNNNNNAGG 2 cut(s) 228, 2198
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 1519
BstHHI GCGC 3 cut(s) 126, 354, 1518
BstKTI GATC 8 cut(s) 458, 1252, 1405, 1543, 2170, 2331, 2412, 2560
BstMAI GTCTC 6 cut(s) 214, 416, 974, 1313, 1881, 2561
BstMBI GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
BstMWI GCNNNNNNNGC 5 cut(s) 358, 1081, 2088, 2519, 2629
BstNI CCWGG 7 cut(s) 380, 646, 768, 800, 1890, 2292, 2648
BstNSI RCATGY 3 cut(s) 1054, 1357, 2347
BstPAI GACNNNNGTC 3 cut(s) 1458, 1757, 2300
BstSCI CCNGG 8 cut(s) 378, 644, 684, 766, 798, 1888, 2290, 2646
BstSFI CTRYAG 4 cut(s) 114, 1154, 1917, 2523
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 6 cut(s) 475, 605, 1903, 1976, 2509, 2537
BstV2I GAAGAC 1 cut(s) 1502
BstX2I RGATCY 4 cut(s) 1249, 1402, 2328, 2557
BstXI CCANNNNNNTGG 1 cut(s) 2195
BstYI RGATCY 4 cut(s) 1249, 1402, 2328, 2557
BstZ17I GTATAC 1 cut(s) 1134
Bsu36I CCTNAGG 2 cut(s) 1194, 1986
BsuI GTATCC 1 cut(s) 692
BsuRI GGCC 8 cut(s) 97, 839, 1308, 1563, 1672, 1893, 1942, 2380
BtsI GCAGTG 2 cut(s) 1018, 2593
BtsIMutI CAGTG 4 cut(s) 900, 1018, 1808, 2593
BveI ACCTGC 1 cut(s) 929
Cac8I GCNNGC 6 cut(s) 1073, 1260, 1548, 2093, 2359, 2382
CaiI CAGNNNCTG 2 cut(s) 176, 1916
CfoI GCGC 3 cut(s) 126, 354, 1518
Cfr13I GGNCC 7 cut(s) 341, 770, 1562, 1609, 1616, 1670, 2644
CseI GACGC 3 cut(s) 772, 1455, 2097
Csp6I GTAC 6 cut(s) 190, 331, 617, 1957, 2464, 2478
CviQI GTAC 6 cut(s) 190, 331, 617, 1957, 2464, 2478
DpnI GATC 8 cut(s) 457, 1251, 1404, 1542, 2169, 2330, 2411, 2559
DpnII GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
EaeI YGGCCR 2 cut(s) 1306, 1891
EciI GGCGGA 1 cut(s) 6
Ecl136II GAGCTC 2 cut(s) 1033, 2623
Eco130I CCWWGG 5 cut(s) 1612, 1673, 2194, 2324, 2627
Eco24I GRGCYC 3 cut(s) 1035, 2625, 2654
Eco31I GGTCTC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 1663
Eco47I GGWCC 5 cut(s) 341, 770, 1609, 1616, 2644
Eco53kI GAGCTC 2 cut(s) 1033, 2623
Eco57I CTGAAG 3 cut(s) 267, 555, 1893
Eco72I CACGTG 2 cut(s) 101, 1826
Eco81I CCTNAGG 2 cut(s) 1194, 1986
Eco88I CYCGRG 1 cut(s) 1470
EcoICRI GAGCTC 2 cut(s) 1033, 2623
EcoNI CCTNNNNNAGG 2 cut(s) 228, 2198
EcoO109I RGGNCCY 1 cut(s) 1562
EcoRII CCWGG 7 cut(s) 378, 644, 766, 798, 1888, 2290, 2646
EcoRV GATATC 1 cut(s) 1663
EcoT14I CCWWGG 5 cut(s) 1612, 1673, 2194, 2324, 2627
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 3 cut(s) 1035, 2625, 2654
ErhI CCWWGG 5 cut(s) 1612, 1673, 2194, 2324, 2627
FaqI GGGAC 2 cut(s) 1383, 2308
FauI CCCGC 3 cut(s) 357, 824, 1734
FblI GTMKAC 4 cut(s) 540, 1133, 1578, 2304
Fnu4HI GCNGC 8 cut(s) 122, 489, 594, 1024, 1917, 1965, 2523, 2526
FriOI GRGCYC 3 cut(s) 1035, 2625, 2654
Fsp4HI GCNGC 8 cut(s) 122, 489, 594, 1024, 1917, 1965, 2523, 2526
FspBI CTAG 6 cut(s) 614, 1427, 1559, 1572, 2376, 2628
GlaI GCGC 3 cut(s) 125, 353, 1517
GluI GCNGC 8 cut(s) 122, 489, 594, 1024, 1917, 1965, 2523, 2526
GsuI CTGGAG 2 cut(s) 628, 1832
HaeII RGCGCY 1 cut(s) 1519
HaeIII GGCC 8 cut(s) 97, 839, 1308, 1563, 1672, 1893, 1942, 2380
HapII CCGG 1 cut(s) 685
HgaI GACGC 3 cut(s) 772, 1455, 2097
HhaI GCGC 3 cut(s) 126, 354, 1518
Hin1I GRCGYC 1 cut(s) 764
Hin6I GCGC 3 cut(s) 124, 352, 1516
HinP1I GCGC 3 cut(s) 124, 352, 1516
HincII GTYRAC 4 cut(s) 792, 1435, 1696, 2305
HindII GTYRAC 4 cut(s) 792, 1435, 1696, 2305
HindIII AAGCTT 4 cut(s) 263, 324, 359, 1733
HinfI GANTC 9 cut(s) 166, 386, 641, 1321, 1503, 1597, 1687, 2132, 2242
HpaI GTTAAC 1 cut(s) 792
HpaII CCGG 1 cut(s) 685
HphI GGTGA 4 cut(s) 172, 431, 971, 1027
HpyAV CCTTC 5 cut(s) 224, 533, 620, 1917, 2635
HpyCH4III ACNGT 9 cut(s) 194, 337, 373, 624, 881, 985, 997, 2139, 2299
HpyCH4IV ACGT 3 cut(s) 100, 1411, 1825
HpyF10VI GCNNNNNNNGC 5 cut(s) 358, 1081, 2088, 2519, 2629
HpySE526I ACGT 3 cut(s) 100, 1411, 1825
Hsp92I GRCGYC 1 cut(s) 764
HspAI GCGC 3 cut(s) 124, 352, 1516
KspAI GTTAAC 1 cut(s) 792
Kzo9I GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
LmnI GCTCC 6 cut(s) 73, 530, 1474, 2472, 2628, 2657
Lsp1109I GCAGC 6 cut(s) 475, 605, 1903, 1976, 2509, 2537
LweI GCATC 7 cut(s) 163, 544, 596, 1172, 1210, 2329, 2616
MaeI CTAG 6 cut(s) 614, 1427, 1559, 1572, 2376, 2628
MaeII ACGT 3 cut(s) 100, 1411, 1825
MaeIII GTNAC 8 cut(s) 673, 760, 865, 881, 1213, 1340, 1451, 2590
MalI GATC 8 cut(s) 457, 1251, 1404, 1542, 2169, 2330, 2411, 2559
MboI GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
MfeI CAATTG 1 cut(s) 1098
MflI RGATCY 4 cut(s) 1249, 1402, 2328, 2557
MhlI GDGCHC 4 cut(s) 140, 1035, 2625, 2654
MlsI TGGCCA 1 cut(s) 1308
MluNI TGGCCA 1 cut(s) 1308
MlyI GAGTC 4 cut(s) 395, 635, 1315, 1681
MmeI TCCRAC 3 cut(s) 734, 1468, 1733
Mox20I TGGCCA 1 cut(s) 1308
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 3 cut(s) 1596, 1795, 2058
MscI TGGCCA 1 cut(s) 1308
MseI TTAA 5 cut(s) 791, 1226, 1331, 1365, 2142
MslI CAYNNNNRTG 2 cut(s) 2391, 2503
Msp20I TGGCCA 1 cut(s) 1308
MspA1I CMGCKG 1 cut(s) 1967
MspI CCGG 1 cut(s) 685
MspR9I CCNGG 8 cut(s) 380, 646, 686, 768, 800, 1890, 2292, 2648
MunI CAATTG 1 cut(s) 1098
Mva1269I GAATGC 2 cut(s) 852, 1704
MvaI CCWGG 7 cut(s) 380, 646, 768, 800, 1890, 2292, 2648
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 5 cut(s) 358, 1081, 2088, 2519, 2629
NciI CCSGG 1 cut(s) 686
NdeII GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
NlaIV GGNNCC 5 cut(s) 878, 1251, 1404, 2499, 2653
NmuCI GTSAC 5 cut(s) 673, 760, 1213, 1451, 2590
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 3 cut(s) 1054, 1357, 2347
PciI ACATGT 2 cut(s) 1353, 2343
PctI GAATGC 2 cut(s) 852, 1704
PdmI GAANNNNTTC 3 cut(s) 1596, 1795, 2058
PfeI GAWTC 5 cut(s) 166, 1503, 1597, 2132, 2242
PfoI TCCNGGA 2 cut(s) 378, 644
PkrI GCNGC 8 cut(s) 123, 490, 595, 1025, 1918, 1966, 2524, 2527
PleI GAGTC 4 cut(s) 394, 635, 1315, 1681
PmaCI CACGTG 2 cut(s) 101, 1826
PmlI CACGTG 2 cut(s) 101, 1826
PpsI GAGTC 4 cut(s) 394, 635, 1315, 1681
Ppu21I YACGTR 3 cut(s) 101, 1412, 1826
PscI ACATGT 2 cut(s) 1353, 2343
PshAI GACNNNNGTC 3 cut(s) 1458, 1757, 2300
PsiI TTATAA 1 cut(s) 1838
Psp124BI GAGCTC 2 cut(s) 1035, 2625
Psp6I CCWGG 7 cut(s) 378, 644, 766, 798, 1888, 2290, 2646
PspCI CACGTG 2 cut(s) 101, 1826
PspGI CCWGG 7 cut(s) 378, 644, 766, 798, 1888, 2290, 2646
PspN4I GGNNCC 5 cut(s) 878, 1251, 1404, 2499, 2653
PspPI GGNCC 7 cut(s) 341, 770, 1562, 1609, 1616, 1670, 2644
PstI CTGCAG 2 cut(s) 1921, 2527
PstNI CAGNNNCTG 2 cut(s) 176, 1916
PsuI RGATCY 4 cut(s) 1249, 1402, 2328, 2557
PvuII CAGCTG 1 cut(s) 1967
RsaI GTAC 6 cut(s) 191, 332, 618, 1958, 2465, 2479
RsaNI GTAC 6 cut(s) 190, 331, 617, 1957, 2464, 2478
RseI CAYNNNNRTG 2 cut(s) 2391, 2503
SacI GAGCTC 2 cut(s) 1035, 2625
SalI GTCGAC 1 cut(s) 2303
SaqAI TTAA 5 cut(s) 791, 1226, 1331, 1365, 2142
SatI GCNGC 8 cut(s) 122, 489, 594, 1024, 1917, 1965, 2523, 2526
Sau3AI GATC 8 cut(s) 455, 1249, 1402, 1540, 2167, 2328, 2409, 2557
Sau96I GGNCC 7 cut(s) 341, 770, 1562, 1609, 1616, 1670, 2644
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 4 cut(s) 395, 635, 1315, 1681
ScrFI CCNGG 8 cut(s) 380, 646, 686, 768, 800, 1890, 2292, 2648
SduI GDGCHC 4 cut(s) 140, 1035, 2625, 2654
SfaNI GCATC 7 cut(s) 163, 544, 596, 1172, 1210, 2329, 2616
SfcI CTRYAG 4 cut(s) 114, 1154, 1917, 2523
SinI GGWCC 5 cut(s) 341, 770, 1609, 1616, 2644
SmiMI CAYNNNNRTG 2 cut(s) 2391, 2503
SmlI CTYRAG 4 cut(s) 63, 362, 503, 1316
SmoI CTYRAG 4 cut(s) 63, 362, 503, 1316
SsiI CCGC 7 cut(s) 17, 35, 121, 350, 817, 1023, 1727
SspI AATATT 1 cut(s) 1007
SspMI CTAG 6 cut(s) 614, 1427, 1559, 1572, 2376, 2628
SstI GAGCTC 2 cut(s) 1035, 2625
StyD4I CCNGG 8 cut(s) 378, 644, 684, 766, 798, 1888, 2290, 2646
StyI CCWWGG 5 cut(s) 1612, 1673, 2194, 2324, 2627
TaaI ACNGT 9 cut(s) 194, 337, 373, 624, 881, 985, 997, 2139, 2299
TaiI ACGT 3 cut(s) 103, 1414, 1828
TaqI TCGA 4 cut(s) 454, 1933, 2160, 2304
TatI WGTACW 3 cut(s) 189, 330, 2477
TauI GCSGC 2 cut(s) 124, 1026
TfiI GAWTC 5 cut(s) 166, 1503, 1597, 2132, 2242
Tru1I TTAA 5 cut(s) 791, 1226, 1331, 1365, 2142
Tru9I TTAA 5 cut(s) 791, 1226, 1331, 1365, 2142
TscAI CASTG 4 cut(s) 907, 1025, 1815, 2593
TseFI GTSAC 5 cut(s) 673, 760, 1213, 1451, 2590
TseI GCWGC 6 cut(s) 488, 593, 1916, 1964, 2522, 2525
Tsp45I GTSAC 5 cut(s) 673, 760, 1213, 1451, 2590
TspDTI ATGAA 7 cut(s) 225, 452, 683, 811, 1618, 1781, 2562
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 4 cut(s) 907, 1025, 1815, 2593
VpaK11BI GGWCC 5 cut(s) 341, 770, 1609, 1616, 2644
XagI CCTNNNNNAGG 2 cut(s) 228, 2198
XapI RAATTY 4 cut(s) 649, 856, 1464, 1795
XceI RCATGY 3 cut(s) 1054, 1357, 2347
XmaJI CCTAGG 1 cut(s) 2627
XmiI GTMKAC 4 cut(s) 540, 1133, 1578, 2304
XmnI GAANNNNTTC 3 cut(s) 1596, 1795, 2058
XspI CTAG 6 cut(s) 614, 1427, 1559, 1572, 2376, 2628
ZrmI AGTACT 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.