Rw2G043890

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001253
Physical Location & Seq
Reverse (-)
70419691 .. 70424950
5260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043890.1

Sequence Viewer

Length: 2070 bp
ATGGGATGCCTTCTAGTACGACAGTCATTCTTCCATGATGACTCCAGGAACTTTGTTGAGATTGGAGGAGGTGTGACTGGTGTCCGGGGTTTTCATTCCAGTTTCCGTCCAACTCAGGGGGGCATGTCCTTGAATATGGATGTATCTACAACAATGATTGTGACGCCTGGACCTGTTATTGATTTTCTGTTAACCAACCAGGGTGTACGAGAACCCCGCTACATTGACTGGGTAAAGGCCAAAAGAATGCTGAAAAATATGAGGATTACAACGAGACACCGTAACATGGAGTGCAAAATCACTGGGTTGAGTGAGAAGACCTGCAATAATCAGTTGTTTAATCTGAAGCTAAGGAGTGGTGATGGCATGAGTGAGGGGGAAACTGTGGAGATTACGGTGTATGAATATTTCGTCAAACACTGTGGCATAGAGCTCACCTATTCTCAACACATGCCATGCCTTGATGTTGGCAAGCCAAAGAGGCCCACTTATGTTCCAGTTGAGCTATGTTCACTTGTTTCACTACAAAGGTATACAAAAGCATTATCTTCCCAGCAAAGAGCCTCCTTAGTGGAAAAATCAAGGCAGAAGCCTCTGGAGAGAATAAAGAGTGTGACTGATGCTTTAAGAAATTACCGCTATGATGAGGATCCTGTGCTTGCTGAATGTGGTATATCTATAGAGAAGCAACTGATTCAGATGGATGGCCGTATTCTTGAGACCCCAAAGTTAAAGGTCGGTGGCAGTGAGGACATGATGCCCTTTAAGGGACGATGGAACTTCAAAGGAAAGTCATTTTTGGATCCTACTCGCATTAACTCTTGGCTAGCTGTCAACTTCTCCGGACGCTGTGACCTTAGTCAAATCTCTCGGGAGCTTATCAATGTTGGGAAGAAGACTGGAATTCATATTGAGCGACCCAAAACTCTAATTGAGGAAGATCCGCGAGCTGAAAGACTAGGCCCTGTTGCTAGAGTAGACAAGATGTTTGAACAGATTCAGGCTAAGATCCAAGAACCACCTGAGTTCATTCTGTGTGTCATACCCAAGAAAGGTTCTGATATCTATGGGCCTTGGAAGAAAAAAACTCTGGTTGACTTTGGGATTCCAACACAATGTATTTCCCCACCCAAGCTTAGCGATCCTTACCTGACTAATGTCCTAATGAAAATCAATACCAAGCTTGGAGGAATAAATTCTCTCTTGGCACTGGAGTACTCCTCACGTGTTCCTCTTATAAATGATACTCCTACAATGATTTTGGGGATGGATGTGTCTCATGGTTCTCCTGGCCGTTCAGATATTCCTTCAGTTGCTGCGGTTGTTGGCTCTCGTAGTTGGCCTCTTATATCAAGGTACAGAGCAGCTGTTAGAACACAATCTCCTAAGGTGGAGATGATTGATGGTCTATACAAGCCACTTCCAAATGGTAATGATGATGGTATTATCAGGGAACTTCTTCTGGACTTCTATAACACAAGCAAAGGACGCAAACCAACTCAGATAATTGTTTTCAGGGATGGCGTCAGCGAATCACAGTTTAATCAAGTGTTGAACATTGAGCTGGATCAAATTGTAAAGGCTTACCAGAACCTTGGGGAGGAAAATGTTCCAAAGTTCACTCTCATTATAGCTCAAAAGAATCATCACACAAAGCTATTCCAAGCTAATAGCCCTGACAATGTTCCACCAGGGACAGTTGTTGACACAAAAATCGTGCACCCAAGGATCTATGATTTCTACATGTGTGCTCAGGCTGGCATGATTGGAACTTCGAGGCCAGCTCACTATCATGTCTTGCTTGATGAGATTGGTTTTTCCCCTGATGACTTGCAGAACCTGATTCACTCCCTTTCTTATGTGTACCAAAGGAGCTGTACTGCAATATCCATTGTGGCACCCATATGCTATGCGCACCTTGCTGCAGCACAAGTGGGGCAGTTTATGAAGTTTGAAGATCTCTCGGAAACTTCATCAGCTAAAGGTAGTGTCACAACATCAGAGAGCATCCCAGTTCCCGAGCTCCCTAGGCTTCATAGAAAGGTCCAGGGCTCCATGTTCTTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

689

Amino Acids

77.31

Weight (kDa)

8.95

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoL1 PF08699 6 - 54 6.9e-18 Argonaute linker 1 domain
PAZ PF02170 60 - 190 3.9e-29 PAZ domain
ArgoL2 PF16488 200 - 245 3.9e-12 Argonaute linker 2 domain
Piwi PF02171 343 - 650 6.9e-105 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1238
Acc16I TGCGCA 1 cut(s) 1914
Acc36I ACCTGC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 1897
AccI GTMKAC 2 cut(s) 533, 978
AccII CGCG 1 cut(s) 946
AccIII TCCGGA 1 cut(s) 842
AciI CCGC 4 cut(s) 217, 637, 944, 1319
AclWI GGATC 9 cut(s) 644, 657, 797, 810, 935, 1003, 1136, 1575, 1736
AcoI YGGCCR 2 cut(s) 706, 1291
AcsI RAATTY 2 cut(s) 903, 1195
AcuI CTGAAG 2 cut(s) 365, 1293
AcvI CACGTG 1 cut(s) 1226
AcyI GRCGYC 2 cut(s) 164, 1524
AfaI GTAC 6 cut(s) 18, 207, 1217, 1358, 1865, 1879
AfiI CCNNNNNNNGG 5 cut(s) 116, 286, 767, 1052, 1600
AflIII ACRYGT 2 cut(s) 1225, 1743
AgsI TTSAA 5 cut(s) 133, 784, 992, 1555, 1955
AjnI CCWGG 6 cut(s) 44, 166, 198, 1288, 1690, 2046
AloI GAACNNNNNNTCC 2 cut(s) 1366, 1398
Alw21I GWGCWC 4 cut(s) 435, 1722, 1753, 2025
Alw26I GTCTC 3 cut(s) 268, 713, 1281
Alw44I GTGCAC 1 cut(s) 1718
AlwI GGATC 9 cut(s) 644, 657, 797, 810, 935, 1003, 1136, 1575, 1736
AlwNI CAGNNNCTG 2 cut(s) 1316, 1840
Ama87I CYCGRG 2 cut(s) 870, 2018
Aor13HI TCCGGA 1 cut(s) 842
AoxI GGCC 8 cut(s) 237, 482, 706, 961, 1070, 1291, 1340, 1778
ApaLI GTGCAC 1 cut(s) 1718
ApeKI GCWGC 4 cut(s) 1316, 1364, 1922, 1925
ApoI RAATTY 2 cut(s) 903, 1195
ArsI GACNNNNNNTTYG 2 cut(s) 971, 1003
Asp700I GAANNNNTTC 4 cut(s) 996, 1195, 1458, 1608
AspA2I CCTAGG 1 cut(s) 2027
AspLEI GCGC 1 cut(s) 1915
AspS9I GGNCC 5 cut(s) 170, 483, 962, 1070, 2044
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 2 cut(s) 371, 427
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 2 cut(s) 870, 2018
AvaII GGWCC 2 cut(s) 170, 2044
AvrII CCTAGG 1 cut(s) 2027
AxyI CCTNAGG 1 cut(s) 1386
BaeGI GKGCMC 1 cut(s) 1722
BamHI GGATCC 2 cut(s) 649, 802
BanI GGYRCC 1 cut(s) 1897
BanII GRGCYC 3 cut(s) 435, 2025, 2054
BbrPI CACGTG 1 cut(s) 1226
BbsI GAAGAC 2 cut(s) 323, 902
Bbv12I GWGCWC 4 cut(s) 435, 1722, 1753, 2025
BbvI GCAGC 4 cut(s) 1303, 1376, 1909, 1937
BccI CCATC 8 cut(s) 356, 694, 698, 768, 1261, 1397, 1433, 1514
BceAI ACGGC 2 cut(s) 693, 1278
BciT130I CCWGG 6 cut(s) 46, 168, 200, 1290, 1692, 2048
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 3 cut(s) 268, 713, 1281
BfaI CTAG 5 cut(s) 14, 827, 959, 972, 2028
BfmI CTRYAG 2 cut(s) 678, 1923
BfuAI ACCTGC 1 cut(s) 329
BglI GCCNNNNNGGC 1 cut(s) 481
BglII AGATCT 1 cut(s) 1957
BisI GCNGC 4 cut(s) 1317, 1365, 1923, 1926
BlnI CCTAGG 1 cut(s) 2027
BlpI GCTNAGC 1 cut(s) 1136
BlsI GCNGC 4 cut(s) 1318, 1366, 1924, 1927
BmcAI AGTACT 1 cut(s) 1217
Bme1390I CCNGG 7 cut(s) 46, 86, 168, 200, 1290, 1692, 2048
Bme18I GGWCC 2 cut(s) 170, 2044
BmeT110I CYCGRG 2 cut(s) 870, 2018
BmgT120I GGNCC 5 cut(s) 170, 483, 962, 1070, 2044
BmiI GGNNCC 4 cut(s) 651, 804, 1899, 2053
BmrFI CCNGG 7 cut(s) 46, 86, 168, 200, 1290, 1692, 2048
BmrI ACTGGG 3 cut(s) 238, 312, 2006
BmsI GCATC 3 cut(s) 610, 747, 2016
BmtI GCTAGC 1 cut(s) 830
BmuI ACTGGG 3 cut(s) 238, 312, 2006
BoxI GACNNNNGTC 3 cut(s) 80, 858, 1157
BpiI GAAGAC 2 cut(s) 323, 902
BplI GAGNNNNNCTC 4 cut(s) 1205, 1237, 1768, 1800
BpmI CTGGAG 3 cut(s) 28, 617, 1232
Bpu10I CCTNAGC 2 cut(s) 350, 1752
Bpu1102I GCTNAGC 1 cut(s) 1136
BpuEI CTTGAG 1 cut(s) 737
BpuMI CCSGG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 1226
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 2 cut(s) 164, 1524
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 8 cut(s) 85, 199, 1073, 1594, 1691, 1724, 2027, 2047
BsaWI WCCGGW 1 cut(s) 842
BsaXI ACNNNNNCTCC 4 cut(s) 57, 87, 1366, 1396
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 286, 767, 1052, 1600
Bse1I ACTGG 8 cut(s) 82, 99, 233, 307, 497, 904, 1215, 2012
Bse21I CCTNAGG 1 cut(s) 1386
Bse8I GATNNNNATC 1 cut(s) 648
BseAI TCCGGA 1 cut(s) 842
BseBI CCWGG 6 cut(s) 46, 168, 200, 1290, 1692, 2048
BseDI CCNNGG 8 cut(s) 85, 199, 1073, 1594, 1691, 1724, 2027, 2047
BseGI GGATG 7 cut(s) 11, 145, 709, 1272, 1276, 1525, 2007
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 5 cut(s) 116, 286, 767, 1052, 1600
BseMII CTCAG 4 cut(s) 128, 1014, 1514, 1766
BseNI ACTGG 8 cut(s) 82, 99, 233, 307, 497, 904, 1215, 2012
BseRI GAGGAG 2 cut(s) 81, 1210
BseSI GKGCMC 1 cut(s) 1722
BseXI GCAGC 4 cut(s) 1303, 1376, 1909, 1937
BseYI CCCAGC 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 946
BshFI GGCC 8 cut(s) 239, 484, 708, 963, 1072, 1293, 1342, 1780
BshNI GGYRCC 1 cut(s) 1897
BsiHKAI GWGCWC 4 cut(s) 435, 1722, 1753, 2025
BsiHKCI CYCGRG 2 cut(s) 870, 2018
BsiSI CCGG 2 cut(s) 85, 843
BslFI GGGAC 2 cut(s) 783, 1708
BslI CCNNNNNNNGG 5 cut(s) 116, 286, 767, 1052, 1600
BsmAI GTCTC 3 cut(s) 268, 713, 1281
BsmFI GGGAC 2 cut(s) 783, 1708
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 8 cut(s) 239, 484, 708, 963, 1072, 1293, 1342, 1780
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 2 cut(s) 870, 2018
Bsp1286I GDGCHC 5 cut(s) 435, 1722, 1753, 2025, 2054
Bsp13I TCCGGA 1 cut(s) 842
Bsp143I GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
Bsp1720I GCTNAGC 1 cut(s) 1136
BspACI CCGC 4 cut(s) 217, 637, 944, 1319
BspANI GGCC 8 cut(s) 239, 484, 708, 963, 1072, 1293, 1342, 1780
BspCNI CTCAG 4 cut(s) 127, 1015, 1513, 1765
BspEI TCCGGA 1 cut(s) 842
BspFNI CGCG 1 cut(s) 946
BspLI GGNNCC 4 cut(s) 651, 804, 1899, 2053
BspMAI CTGCAG 1 cut(s) 1927
BspMI ACCTGC 1 cut(s) 329
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 9 cut(s) 644, 657, 797, 810, 935, 1003, 1136, 1575, 1736
BspT107I GGYRCC 1 cut(s) 1897
BspTNI GGTCTC 1 cut(s) 713
BsrI ACTGG 8 cut(s) 82, 99, 233, 307, 497, 904, 1215, 2012
BssECI CCNNGG 8 cut(s) 85, 199, 1073, 1594, 1691, 1724, 2027, 2047
BssMI GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
BssNAI GTATAC 1 cut(s) 534
BssNI GRCGYC 2 cut(s) 164, 1524
BssT1I CCWWGG 4 cut(s) 1073, 1594, 1724, 2027
Bst1107I GTATAC 1 cut(s) 534
Bst2UI CCWGG 6 cut(s) 46, 168, 200, 1290, 1692, 2048
Bst4CI ACNGT 7 cut(s) 24, 281, 385, 397, 422, 1539, 1699
BstACI GRCGYC 2 cut(s) 164, 1524
BstBAI YACGTR 1 cut(s) 1226
BstC8I GCNNGC 6 cut(s) 473, 660, 828, 948, 1759, 1782
BstENI CCTNNNNNAGG 1 cut(s) 1598
BstF5I GGATG 7 cut(s) 11, 145, 709, 1272, 1276, 1525, 2007
BstFNI CGCG 1 cut(s) 946
BstHHI GCGC 1 cut(s) 1915
BstKTI GATC 8 cut(s) 652, 805, 943, 1011, 1144, 1570, 1731, 1960
BstMAI GTCTC 3 cut(s) 268, 713, 1281
BstMBI GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
BstMWI GCNNNNNNNGC 4 cut(s) 481, 1488, 1919, 2029
BstNI CCWGG 6 cut(s) 46, 168, 200, 1290, 1692, 2048
BstNSI RCATGY 3 cut(s) 127, 454, 1747
BstPAI GACNNNNGTC 3 cut(s) 80, 858, 1157
BstSCI CCNGG 7 cut(s) 44, 84, 166, 198, 1288, 1690, 2046
BstSFI CTRYAG 2 cut(s) 678, 1923
BstSLI GKGCMC 1 cut(s) 1722
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 4 cut(s) 1303, 1376, 1909, 1937
BstV2I GAAGAC 2 cut(s) 323, 902
BstX2I RGATCY 6 cut(s) 649, 802, 940, 1008, 1728, 1957
BstXI CCANNNNNNTGG 1 cut(s) 1595
BstYI RGATCY 6 cut(s) 649, 802, 940, 1008, 1728, 1957
BstZ17I GTATAC 1 cut(s) 534
Bsu36I CCTNAGG 1 cut(s) 1386
BsuRI GGCC 8 cut(s) 239, 484, 708, 963, 1072, 1293, 1342, 1780
BtsCI GGATG 7 cut(s) 11, 145, 709, 1272, 1276, 1525, 2007
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 4 cut(s) 300, 418, 751, 1208
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 6 cut(s) 473, 660, 828, 948, 1759, 1782
CaiI CAGNNNCTG 2 cut(s) 1316, 1840
CfoI GCGC 1 cut(s) 1915
Cfr13I GGNCC 5 cut(s) 170, 483, 962, 1070, 2044
CseI GACGC 4 cut(s) 172, 855, 1497, 1513
Csp6I GTAC 6 cut(s) 17, 206, 1216, 1357, 1864, 1878
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviQI GTAC 6 cut(s) 17, 206, 1216, 1357, 1864, 1878
DpnI GATC 8 cut(s) 651, 804, 942, 1010, 1143, 1569, 1730, 1959
DpnII GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
EaeI YGGCCR 2 cut(s) 706, 1291
Ecl136II GAGCTC 2 cut(s) 433, 2023
Eco130I CCWWGG 4 cut(s) 1073, 1594, 1724, 2027
Eco24I GRGCYC 3 cut(s) 435, 2025, 2054
Eco31I GGTCTC 1 cut(s) 713
Eco32I GATATC 1 cut(s) 1063
Eco47I GGWCC 2 cut(s) 170, 2044
Eco53kI GAGCTC 2 cut(s) 433, 2023
Eco57I CTGAAG 2 cut(s) 365, 1293
Eco72I CACGTG 1 cut(s) 1226
Eco81I CCTNAGG 1 cut(s) 1386
Eco88I CYCGRG 2 cut(s) 870, 2018
EcoICRI GAGCTC 2 cut(s) 433, 2023
EcoNI CCTNNNNNAGG 1 cut(s) 1598
EcoO109I RGGNCCY 1 cut(s) 962
EcoRI GAATTC 1 cut(s) 903
EcoRII CCWGG 6 cut(s) 44, 166, 198, 1288, 1690, 2046
EcoRV GATATC 1 cut(s) 1063
EcoT14I CCWWGG 4 cut(s) 1073, 1594, 1724, 2027
EcoT38I GRGCYC 3 cut(s) 435, 2025, 2054
ErhI CCWWGG 4 cut(s) 1073, 1594, 1724, 2027
FaqI GGGAC 2 cut(s) 783, 1708
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 1 cut(s) 1904
FblI GTMKAC 2 cut(s) 533, 978
Fnu4HI GCNGC 4 cut(s) 1317, 1365, 1923, 1926
FokI GGATG 7 cut(s) 18, 152, 716, 1279, 1283, 1532, 1994
FriOI GRGCYC 3 cut(s) 435, 2025, 2054
Fsp4HI GCNGC 4 cut(s) 1317, 1365, 1923, 1926
FspAI RTGCGCAY 1 cut(s) 1914
FspBI CTAG 5 cut(s) 14, 827, 959, 972, 2028
FspI TGCGCA 1 cut(s) 1914
GlaI GCGC 1 cut(s) 1914
GluI GCNGC 4 cut(s) 1317, 1365, 1923, 1926
GsaI CCCAGC 1 cut(s) 556
GsuI CTGGAG 3 cut(s) 28, 617, 1232
HaeIII GGCC 8 cut(s) 239, 484, 708, 963, 1072, 1293, 1342, 1780
HapII CCGG 2 cut(s) 85, 843
HgaI GACGC 4 cut(s) 172, 855, 1497, 1513
HhaI GCGC 1 cut(s) 1915
Hin1I GRCGYC 2 cut(s) 164, 1524
Hin6I GCGC 1 cut(s) 1913
HinP1I GCGC 1 cut(s) 1913
HincII GTYRAC 4 cut(s) 192, 835, 1096, 1705
HindII GTYRAC 4 cut(s) 192, 835, 1096, 1705
HindIII AAGCTT 2 cut(s) 1133, 1181
HinfI GANTC 7 cut(s) 41, 694, 997, 1105, 1532, 1642, 1843
HpaI GTTAAC 1 cut(s) 192
HpaII CCGG 2 cut(s) 85, 843
HphI GGTGA 2 cut(s) 371, 427
Hpy188I TCNGA 7 cut(s) 345, 699, 1060, 1300, 1503, 1966, 2002
Hpy188III TCNNGA 6 cut(s) 596, 716, 843, 872, 1463, 2018
HpyAV CCTTC 2 cut(s) 20, 1317
HpyCH4III ACNGT 7 cut(s) 24, 281, 385, 397, 422, 1539, 1699
HpyCH4IV ACGT 1 cut(s) 1225
HpyCH4V TGCA 6 cut(s) 294, 324, 1720, 1834, 1883, 1925
HpyF10VI GCNNNNNNNGC 4 cut(s) 481, 1488, 1919, 2029
HpySE526I ACGT 1 cut(s) 1225
Hsp92I GRCGYC 2 cut(s) 164, 1524
HspAI GCGC 1 cut(s) 1913
Kpn2I TCCGGA 1 cut(s) 842
KspAI GTTAAC 1 cut(s) 192
Kzo9I GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
LmnI GCTCC 4 cut(s) 874, 1872, 2028, 2057
Lsp1109I GCAGC 4 cut(s) 1303, 1376, 1909, 1937
LweI GCATC 3 cut(s) 610, 747, 2016
MaeI CTAG 5 cut(s) 14, 827, 959, 972, 2028
MaeII ACGT 1 cut(s) 1225
MaeIII GTNAC 6 cut(s) 73, 160, 281, 613, 851, 1990
MalI GATC 8 cut(s) 651, 804, 942, 1010, 1143, 1569, 1730, 1959
MboI GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
MflI RGATCY 6 cut(s) 649, 802, 940, 1008, 1728, 1957
MhlI GDGCHC 5 cut(s) 435, 1722, 1753, 2025, 2054
MluCI AATT 6 cut(s) 631, 903, 930, 1195, 1506, 1572
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 134, 1133
MroI TCCGGA 1 cut(s) 842
MroXI GAANNNNTTC 4 cut(s) 996, 1195, 1458, 1608
MseI TTAA 7 cut(s) 191, 339, 626, 731, 765, 816, 1542
MslI CAYNNNNRTG 2 cut(s) 1791, 1903
MspA1I CMGCKG 1 cut(s) 1367
MspI CCGG 2 cut(s) 85, 843
MspR9I CCNGG 7 cut(s) 46, 86, 168, 200, 1290, 1692, 2048
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 6 cut(s) 46, 168, 200, 1290, 1692, 2048
MvnI CGCG 1 cut(s) 946
MwoI GCNNNNNNNGC 4 cut(s) 481, 1488, 1919, 2029
NciI CCSGG 1 cut(s) 86
NdeI CATATG 1 cut(s) 1904
NdeII GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
NheI GCTAGC 1 cut(s) 826
NlaIV GGNNCC 4 cut(s) 651, 804, 1899, 2053
NmuCI GTSAC 5 cut(s) 73, 160, 613, 851, 1990
NsbI TGCGCA 1 cut(s) 1914
NspI RCATGY 3 cut(s) 127, 454, 1747
PciI ACATGT 1 cut(s) 1743
PctI GAATGC 1 cut(s) 252
PdmI GAANNNNTTC 4 cut(s) 996, 1195, 1458, 1608
PfeI GAWTC 6 cut(s) 694, 997, 1105, 1532, 1642, 1843
PfoI TCCNGGA 1 cut(s) 44
PkrI GCNGC 4 cut(s) 1318, 1366, 1924, 1927
PleI GAGTC 1 cut(s) 35
PmaCI CACGTG 1 cut(s) 1226
PmlI CACGTG 1 cut(s) 1226
PpsI GAGTC 1 cut(s) 35
Ppu21I YACGTR 1 cut(s) 1226
PscI ACATGT 1 cut(s) 1743
PshAI GACNNNNGTC 3 cut(s) 80, 858, 1157
PsiI TTATAA 1 cut(s) 1238
Psp124BI GAGCTC 2 cut(s) 435, 2025
Psp6I CCWGG 6 cut(s) 44, 166, 198, 1288, 1690, 2046
PspCI CACGTG 1 cut(s) 1226
PspFI CCCAGC 1 cut(s) 552
PspGI CCWGG 6 cut(s) 44, 166, 198, 1288, 1690, 2046
PspN4I GGNNCC 4 cut(s) 651, 804, 1899, 2053
PspPI GGNCC 5 cut(s) 170, 483, 962, 1070, 2044
PstI CTGCAG 1 cut(s) 1927
PstNI CAGNNNCTG 2 cut(s) 1316, 1840
PsuI RGATCY 6 cut(s) 649, 802, 940, 1008, 1728, 1957
PvuII CAGCTG 1 cut(s) 1367
RsaI GTAC 6 cut(s) 18, 207, 1217, 1358, 1865, 1879
RsaNI GTAC 6 cut(s) 17, 206, 1216, 1357, 1864, 1878
RseI CAYNNNNRTG 2 cut(s) 1791, 1903
SacI GAGCTC 2 cut(s) 435, 2025
SaqAI TTAA 7 cut(s) 191, 339, 626, 731, 765, 816, 1542
SatI GCNGC 4 cut(s) 1317, 1365, 1923, 1926
Sau3AI GATC 8 cut(s) 649, 802, 940, 1008, 1141, 1567, 1728, 1957
Sau96I GGNCC 5 cut(s) 170, 483, 962, 1070, 2044
ScaI AGTACT 1 cut(s) 1217
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 7 cut(s) 46, 86, 168, 200, 1290, 1692, 2048
SduI GDGCHC 5 cut(s) 435, 1722, 1753, 2025, 2054
SfaNI GCATC 3 cut(s) 610, 747, 2016
SfcI CTRYAG 2 cut(s) 678, 1923
SinI GGWCC 2 cut(s) 170, 2044
SmiMI CAYNNNNRTG 2 cut(s) 1791, 1903
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 6 cut(s) 631, 903, 930, 1195, 1506, 1572
SsiI CCGC 4 cut(s) 217, 637, 944, 1319
SspI AATATT 1 cut(s) 407
SspMI CTAG 5 cut(s) 14, 827, 959, 972, 2028
SstI GAGCTC 2 cut(s) 435, 2025
StyD4I CCNGG 7 cut(s) 44, 84, 166, 198, 1288, 1690, 2046
StyI CCWWGG 4 cut(s) 1073, 1594, 1724, 2027
TaaI ACNGT 7 cut(s) 24, 281, 385, 397, 422, 1539, 1699
TaiI ACGT 1 cut(s) 1228
TaqI TCGA 1 cut(s) 1775
TasI AATT 6 cut(s) 631, 903, 930, 1195, 1506, 1572
TatI WGTACW 2 cut(s) 1215, 1877
TfiI GAWTC 6 cut(s) 694, 997, 1105, 1532, 1642, 1843
Tru1I TTAA 7 cut(s) 191, 339, 626, 731, 765, 816, 1542
Tru9I TTAA 7 cut(s) 191, 339, 626, 731, 765, 816, 1542
TscAI CASTG 4 cut(s) 307, 425, 751, 1215
TseFI GTSAC 5 cut(s) 73, 160, 613, 851, 1990
TseI GCWGC 4 cut(s) 1316, 1364, 1922, 1925
Tsp45I GTSAC 5 cut(s) 73, 160, 613, 851, 1990
TspDTI ATGAA 8 cut(s) 83, 417, 896, 1018, 1181, 1961, 1962, 2024
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 4 cut(s) 307, 425, 751, 1215
VneI GTGCAC 1 cut(s) 1718
VpaK11BI GGWCC 2 cut(s) 170, 2044
XagI CCTNNNNNAGG 1 cut(s) 1598
XapI RAATTY 2 cut(s) 903, 1195
XceI RCATGY 3 cut(s) 127, 454, 1747
XmaJI CCTAGG 1 cut(s) 2027
XmiI GTMKAC 2 cut(s) 533, 978
XmnI GAANNNNTTC 4 cut(s) 996, 1195, 1458, 1608
XspI CTAG 5 cut(s) 14, 827, 959, 972, 2028
ZrmI AGTACT 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.