FvH4_6g42020

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001253
Physical Location & Seq
Reverse (-)
32884810 .. 32885196
387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42020.t1

Sequence Viewer

Length: 282 bp
ATGTTGAATGACCTTTCATTTGAATCGTGGATCTATATTTTTGTTTCCATATTGCAGGTATCAAAGGATCGGAATACAACTGCAGCCTCAATTGTTGCGCCCATTTGTCATCATTGTTATGCGCACCTAGCTGCAGCACAAGTAATGCAGTTTATAAAGTTTGAAGATCTCTTGGAAACTTCATCATCAGGAAGGGACAATGTCACTACATCAGAGAGGATCCCGGTGCCTGAGCTCCCTCGGCTTCATGAGGATGTTCGTGGTTCCATGTTCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

94

Amino Acids

10.55

Weight (kDa)

5.39

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
Acc16I TGCGCA 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 226
AclWI GGATC 4 cut(s) 38, 75, 214, 227
AgsI TTSAA 3 cut(s) 7, 23, 164
AluBI AGCT 2 cut(s) 131, 235
AluI AGCT 2 cut(s) 131, 235
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 4 cut(s) 38, 75, 214, 227
ApeKI GCWGC 3 cut(s) 83, 131, 134
ArsI GACNNNNNNTTYG 1 cut(s) 34
AspLEI GCGC 2 cut(s) 100, 124
AsuC2I CCSGG 1 cut(s) 224
BamHI GGATCC 1 cut(s) 219
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 95, 118, 146
BcnI CCSGG 1 cut(s) 224
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 2 cut(s) 81, 132
BfuAI ACCTGC 1 cut(s) 46
BglII AGATCT 1 cut(s) 166
BisI GCNGC 3 cut(s) 84, 132, 135
BlsI GCNGC 3 cut(s) 85, 133, 136
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 3 cut(s) 221, 228, 265
BmrFI CCNGG 1 cut(s) 224
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 3 cut(s) 95, 118, 146
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 4 cut(s) 30, 67, 166, 219
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 221, 228, 265
BspMAI CTGCAG 2 cut(s) 85, 136
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 4 cut(s) 38, 75, 214, 227
BspT107I GGYRCC 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 4 cut(s) 30, 67, 166, 219
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 259
BstHHI GCGC 2 cut(s) 100, 124
BstKTI GATC 4 cut(s) 33, 70, 169, 222
BstMBI GATC 4 cut(s) 30, 67, 166, 219
BstMWI GCNNNNNNNGC 2 cut(s) 128, 241
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 2 cut(s) 81, 132
BstV1I GCAGC 3 cut(s) 95, 118, 146
BstX2I RGATCY 3 cut(s) 30, 166, 219
BstYI RGATCY 3 cut(s) 30, 166, 219
BtsCI GGATG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 247
CfoI GCGC 2 cut(s) 100, 124
CviAII CATG 2 cut(s) 248, 268
CviJI RGCY 4 cut(s) 86, 131, 235, 244
CviKI_1 RGCY 4 cut(s) 86, 131, 235, 244
DdeI CTNAG 1 cut(s) 231
DpnI GATC 4 cut(s) 32, 69, 168, 221
DpnII GATC 4 cut(s) 30, 67, 166, 219
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 2 cut(s) 251, 271
FaiI YATR 6 cut(s) 36, 50, 120, 155, 249, 269
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 247, 267
Fnu4HI GCNGC 3 cut(s) 84, 132, 135
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 3 cut(s) 84, 132, 135
FspAI RTGCGCAY 1 cut(s) 123
FspBI CTAG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 2 cut(s) 99, 123
GluI GCNGC 3 cut(s) 84, 132, 135
HapII CCGG 1 cut(s) 224
HhaI GCGC 2 cut(s) 100, 124
Hin1II CATG 2 cut(s) 251, 271
Hin6I GCGC 2 cut(s) 98, 122
HinP1I GCGC 2 cut(s) 98, 122
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 72, 214
Hpy188III TCNNGA 2 cut(s) 189, 248
HpyAV CCTTC 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 55, 83, 134, 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 241
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 251, 271
HspAI GCGC 2 cut(s) 98, 122
Kzo9I GATC 4 cut(s) 30, 67, 166, 219
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 4 cut(s) 41, 174, 237, 243
Lsp1109I GCAGC 3 cut(s) 95, 118, 146
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 32, 69, 168, 221
MboI GATC 4 cut(s) 30, 67, 166, 219
MboII GAAGA 2 cut(s) 176, 265
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 3 cut(s) 30, 166, 219
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 90
MnlI CCTC 4 cut(s) 97, 210, 244, 249
MslI CAYNNNNRTG 2 cut(s) 117, 252
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 128, 241
NciI CCSGG 1 cut(s) 224
NdeII GATC 4 cut(s) 30, 67, 166, 219
NlaIII CATG 2 cut(s) 251, 271
NlaIV GGNNCC 3 cut(s) 221, 228, 265
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 202
NsbI TGCGCA 1 cut(s) 123
PagI TCATGA 1 cut(s) 247
PfeI GAWTC 1 cut(s) 23
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 85, 133, 136
PsiI TTATAA 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 221, 228, 265
PstI CTGCAG 2 cut(s) 85, 136
PsuI RGATCY 3 cut(s) 30, 166, 219
PsyI GACNNNGTC 1 cut(s) 200
RseI CAYNNNNRTG 2 cut(s) 117, 252
SacI GAGCTC 1 cut(s) 237
SatI GCNGC 3 cut(s) 84, 132, 135
Sau3AI GATC 4 cut(s) 30, 67, 166, 219
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 237
SetI ASST 5 cut(s) 15, 60, 129, 133, 237
SfcI CTRYAG 2 cut(s) 81, 132
SmiMI CAYNNNNRTG 2 cut(s) 117, 252
Sse9I AATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 128
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 222
TasI AATT 1 cut(s) 90
TfiI GAWTC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 83, 131, 134
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 6, 171, 236
Tth111I GACNNNGTC 1 cut(s) 200
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.