RLG00000021040

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001253
Physical Location & Seq
Reverse (-)
71289221 .. 71290718
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021040

Sequence Viewer

Length: 528 bp
ATGAGAAGGGATGGAGTAAGTGAATCACAGTTTAATCAAGTCCTGAACATTGAGCTTGATCAAATCGTAAAGGCTTACCAGCACCTAGGGGAGGCTAACATTCCAAAGTTTACTCTATTCCAAACTAATTCCCCTGATAATGTTCCACCAGGGACTGTTGTTGACACCAAAATTGTGCATCCAAGGAATTATGATTTCTACATGTGTGCTCAGGCAGGCATGATTGGAACTTCCAGGCCAGCTCACTATCATGTCTTGCTTGATGAGATTGGCTTTTCCCCTGATGACTTGCAAAACCTGATCCACTCCCATTCTTATGTGTACCAGAGGAGTACAACTGCAATCTCTATTGTGGCGCCCATATGCCATGCGCACCTTGCTGCAGCACAAGTGGGGCAGTTCATGAAGTTTGAAGATCTCTCGGACACCTCATCGGGGAAGGGCAGTGTCACTTCATCAGAGAGCATCCCAGTTCAAGAGCTTCCCAGGCTTCATGAGAAGGTCCAGGGCTCCATGTTCTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

176

Amino Acids

19.45

Weight (kDa)

5.78

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Piwi PF02171 3 - 136 3.6e-45 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 355
AclWI GGATC 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 2 cut(s) 323, 334
AfiI CCNNNNNNNGG 2 cut(s) 91, 435
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 413, 476
AjnI CCWGG 4 cut(s) 148, 233, 485, 504
AluBI AGCT 3 cut(s) 55, 242, 481
AluI AGCT 3 cut(s) 55, 242, 481
Alw21I GWGCWC 1 cut(s) 211
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 380, 383
AspA2I CCTAGG 1 cut(s) 85
AspLEI GCGC 2 cut(s) 358, 373
AspS9I GGNCC 1 cut(s) 502
AvaII GGWCC 1 cut(s) 502
AvrII CCTAGG 1 cut(s) 85
BanI GGYRCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 2 cut(s) 367, 395
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 4 cut(s) 150, 235, 487, 506
BclI TGATCA 1 cut(s) 58
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 359
BglII AGATCT 1 cut(s) 415
BisI GCNGC 2 cut(s) 381, 384
BlnI CCTAGG 1 cut(s) 85
BlsI GCNGC 2 cut(s) 382, 385
Bme1390I CCNGG 4 cut(s) 150, 235, 487, 506
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 2 cut(s) 357, 511
BmrFI CCNGG 4 cut(s) 150, 235, 487, 506
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 2 cut(s) 187, 474
BmuI ACTGGG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 5 cut(s) 85, 149, 182, 485, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 435
Bse1I ACTGG 1 cut(s) 470
BseBI CCWGG 4 cut(s) 150, 235, 487, 506
BseDI CCNNGG 5 cut(s) 85, 149, 182, 485, 505
BseGI GGATG 3 cut(s) 16, 178, 465
BseLI CCNNNNNNNGG 2 cut(s) 91, 435
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 367, 395
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 211
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 91, 435
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 211, 512
Bsp143I GATC 3 cut(s) 58, 300, 415
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 2 cut(s) 402, 493
BspLI GGNNCC 2 cut(s) 357, 511
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 5 cut(s) 85, 149, 182, 485, 505
BssMI GATC 3 cut(s) 58, 300, 415
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 85, 182
Bst2UI CCWGG 4 cut(s) 150, 235, 487, 506
Bst4CI ACNGT 2 cut(s) 30, 157
BstACI GRCGYC 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 217, 240
BstDEI CTNAG 1 cut(s) 210
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 3 cut(s) 16, 178, 465
BstH2I RGCGCY 1 cut(s) 359
BstHHI GCGC 2 cut(s) 358, 373
BstKTI GATC 3 cut(s) 61, 303, 418
BstMBI GATC 3 cut(s) 58, 300, 415
BstMWI GCNNNNNNNGC 2 cut(s) 377, 487
BstNI CCWGG 4 cut(s) 150, 235, 487, 506
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 4 cut(s) 148, 233, 485, 504
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 367, 395
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 16, 178, 465
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 217, 240
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 2 cut(s) 402, 493
CfoI GCGC 2 cut(s) 358, 373
Cfr13I GGNCC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 322, 333
CviAII CATG 7 cut(s) 202, 220, 251, 368, 403, 494, 514
CviJI RGCY 9 cut(s) 55, 74, 95, 238, 242, 273, 481, 490, 510
CviKI_1 RGCY 9 cut(s) 55, 74, 95, 238, 242, 273, 481, 490, 510
CviQI GTAC 2 cut(s) 322, 333
DdeI CTNAG 1 cut(s) 210
DinI GGCGCC 1 cut(s) 357
DpnI GATC 3 cut(s) 60, 302, 417
DpnII GATC 3 cut(s) 58, 300, 415
Eco130I CCWWGG 2 cut(s) 85, 182
Eco24I GRGCYC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoRII CCWGG 4 cut(s) 148, 233, 485, 504
EcoT14I CCWWGG 2 cut(s) 85, 182
EcoT38I GRGCYC 1 cut(s) 512
EgeI GGCGCC 1 cut(s) 357
EheI GGCGCC 1 cut(s) 357
ErhI CCWWGG 2 cut(s) 85, 182
FaeI CATG 7 cut(s) 205, 223, 254, 371, 406, 497, 517
FaqI GGGAC 1 cut(s) 166
FatI CATG 7 cut(s) 201, 219, 250, 367, 402, 493, 513
FauNDI CATATG 1 cut(s) 362
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 2 cut(s) 381, 384
FokI GGATG 3 cut(s) 23, 165, 452
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 381, 384
FspAI RTGCGCAY 1 cut(s) 372
FspBI CTAG 1 cut(s) 86
FspI TGCGCA 1 cut(s) 372
GlaI GCGC 2 cut(s) 357, 372
GluI GCNGC 2 cut(s) 381, 384
HaeII RGCGCY 1 cut(s) 359
HaeIII GGCC 1 cut(s) 238
HhaI GCGC 2 cut(s) 358, 373
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 7 cut(s) 205, 223, 254, 371, 406, 497, 517
Hin6I GCGC 2 cut(s) 356, 371
HinP1I GCGC 2 cut(s) 356, 371
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 111, 163, 322
Hpy188I TCNGA 2 cut(s) 424, 460
Hpy188III TCNNGA 4 cut(s) 43, 403, 476, 494
Hpy8I GTNNAC 3 cut(s) 111, 163, 322
HpyAV CCTTC 2 cut(s) 433, 493
HpyCH4III ACNGT 2 cut(s) 30, 157
HpyCH4V TGCA 4 cut(s) 178, 292, 341, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 487
HpyF3I CTNAG 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 7 cut(s) 205, 223, 254, 371, 406, 497, 517
HspAI GCGC 2 cut(s) 356, 371
KasI GGCGCC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 58, 300, 415
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 2 cut(s) 367, 395
LweI GCATC 2 cut(s) 187, 474
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 448
MalI GATC 3 cut(s) 60, 302, 417
MboI GATC 3 cut(s) 58, 300, 415
MboII GAAGA 2 cut(s) 425, 511
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 211, 512
MluCI AATT 3 cut(s) 127, 171, 187
Mly113I GGCGCC 1 cut(s) 356
MnlI CCTC 3 cut(s) 85, 321, 439
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 2 cut(s) 249, 315
MspR9I CCNGG 4 cut(s) 150, 235, 487, 506
MvaI CCWGG 4 cut(s) 150, 235, 487, 506
MwoI GCNNNNNNNGC 2 cut(s) 377, 487
NarI GGCGCC 1 cut(s) 356
NdeI CATATG 1 cut(s) 362
NdeII GATC 3 cut(s) 58, 300, 415
NlaIII CATG 7 cut(s) 205, 223, 254, 371, 406, 497, 517
NlaIV GGNNCC 2 cut(s) 357, 511
NmuCI GTSAC 1 cut(s) 448
NsbI TGCGCA 1 cut(s) 372
NspI RCATGY 1 cut(s) 205
PagI TCATGA 2 cut(s) 402, 493
PciI ACATGT 1 cut(s) 201
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 382, 385
PluTI GGCGCC 1 cut(s) 359
PscI ACATGT 1 cut(s) 201
Psp6I CCWGG 4 cut(s) 148, 233, 485, 504
PspGI CCWGG 4 cut(s) 148, 233, 485, 504
PspN4I GGNNCC 2 cut(s) 357, 511
PspPI GGNCC 1 cut(s) 502
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 2 cut(s) 323, 334
RsaNI GTAC 2 cut(s) 322, 333
RseI CAYNNNNRTG 2 cut(s) 249, 315
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 381, 384
Sau3AI GATC 3 cut(s) 58, 300, 415
Sau96I GGNCC 1 cut(s) 502
ScrFI CCNGG 4 cut(s) 150, 235, 487, 506
SduI GDGCHC 2 cut(s) 211, 512
SetI ASST 8 cut(s) 57, 87, 244, 300, 378, 431, 483, 504
SfaNI GCATC 2 cut(s) 187, 474
SfcI CTRYAG 1 cut(s) 381
SfoI GGCGCC 1 cut(s) 357
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 249, 315
Sse9I AATT 3 cut(s) 127, 171, 187
SspDI GGCGCC 1 cut(s) 355
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 4 cut(s) 148, 233, 485, 504
StyI CCWWGG 2 cut(s) 85, 182
TaaI ACNGT 2 cut(s) 30, 157
TasI AATT 3 cut(s) 127, 171, 187
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 380, 383
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 4 cut(s) 391, 419, 444, 482
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 502
XagI CCTNNNNNAGG 1 cut(s) 89
XceI RCATGY 1 cut(s) 205
XmaJI CCTAGG 1 cut(s) 85
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.