Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001253

Physical Location & Seq

Genomic Coordinates Reverse (-)

68847190 .. 68848734

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG514400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCTTAATGATCATGTTTCTGCTACAATCTCCTGGAGCTATCAGGCTTACAAGCACCACCAGAAGGTTGATGAGATTCCAAAATTTAATGTGCTTGTGGCTCAAAAGAACCATAATACAAAGCTATTCCAAGCTGTTTTTCCCCAGCATAATGTTCCACCAGGAACAGTTGTGGACACAAATATTGTGCATCCAAGGAATTATGATTTCTACATGTGTGCTCACAAAGGCTCCATTGGAACTTCTAGGCCAGCACACTATCATGTCTTGCTTGATGAGATTGTGGCTTTTCTGCCAATGAACTGCAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

104

Amino Acids

11.91

Weight (kDa)

8.61

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Piwi	PF02171	23 - 94	9.3e-25	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32940
fragaria_vesca	FvH4_4g08040 FvH4_4g08040 FvH4_4g08040 FvH4_4g08040 FvH4_4g08050 FvH4_4g08050 FvH4_4g08050 FvH4_6g42020 FvH4_6g42040 FvH4_6g42040 FvH4_6g42040
malus_domestica	MD09G1115300.v1.1
prunus_persica	Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1
pyrus_communis	pycom09g03960
rosa_chinensis	RchiOBHm_Chr2g0157951 RchiOBHm_Chr2g0157971 RchiOBHm_Chr2g0157981
rosa_laevigata	RLG00000021037 RLG00000021039 RLG00000021040 RLG00000021043 RLG00000021044
rosa_roxburghii	Rroxscaffold_1G00048300 Rroxscaffold_2G00091770 Rroxscaffold_2G00091780 Rroxscaffold_2G00091810 Rroxscaffold_7G00217870
rosa_rugosa	Rorug02G0464500 Rorug02G0464600 Rorug02G0464700 Rorug02G0464700 Rorug02G0464800
rosa_samantha	Rh2AG529900 Rh2AG530400 Rh2AG530500 Rh2BG544600 Rh2BG544700 Rh2BG545100 Rh2BG545200 Rh2CG514300 Rh2CG514400 Rh2CG514800 Rh2CG514900 Rh2DG552900 Rh2DG553300 Rh2DG553400
rosa_wichuraiana	Rw2G043870 Rw2G043890 Rw2G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	32, 160
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	3 cut(s)	39, 124, 134
AluI	AGCT	3 cut(s)	39, 124, 134
Alw21I	GWGCWC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	34, 162
BclI	TGATCA	1 cut(s)	10
BfaI	CTAG	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	34, 162
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	34, 162
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseBI	CCWGG	2 cut(s)	34, 162
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	144
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	34, 162
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	34, 162
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	32, 160
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	252
CviAII	CATG	3 cut(s)	14, 214, 263
CviJI	RGCY	8 cut(s)	39, 47, 101, 124, 134, 231, 250, 287
CviKI_1	RGCY	8 cut(s)	39, 47, 101, 124, 134, 231, 250, 287
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	32, 160
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	3 cut(s)	17, 217, 266
FaiI	YATR	6 cut(s)	15, 114, 150, 204, 215, 264
FatI	CATG	3 cut(s)	13, 213, 262
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	1 cut(s)	177
FspBI	CTAG	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	3 cut(s)	17, 217, 266
HinfI	GANTC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	190, 306
Hsp92II	CATG	3 cut(s)	17, 217, 266
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	36, 236
LpnPI	CCDG	8 cut(s)	19, 29, 46, 74, 147, 158, 174, 264
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	246
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	2 cut(s)	83, 199
MseI	TTAA	2 cut(s)	6, 87
MslI	CAYNNNNRTG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	34, 162
MvaI	CCWGG	2 cut(s)	34, 162
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	17, 217, 266
NlaIV	GGNNCC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	217
PciI	ACATGT	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	32
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	32, 160
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	32, 160
PspN4I	GGNNCC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	6, 87
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	34, 162
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	5 cut(s)	41, 69, 126, 136, 314
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	83, 199
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	32, 160
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	169
TasI	AATT	2 cut(s)	83, 199
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	6, 87
Tru9I	TTAA	2 cut(s)	6, 87
TspDTI	ATGAA	1 cut(s)	314
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.