Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001253

Physical Location & Seq

Genomic Coordinates Reverse (-)

68291990 .. 68295612

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGCACTGTTCCAATCGGTCAAAAACATTCAATGTAGAGATAAGCTATGCTGCCAAAATACCTCTCAAGTCAATTGCTCTTGCCCTTCAAGGAGCTGAAGTAGTCAACACTCGGGATGCATTGAGAGTTCTTGATATTATTCTACGGCAGAAAGCAACTAAGATTAGTGATCATCATGTTATCTGTTCAATGAGATCAAATTCAAGGGAGGCAGAGAAAAATATTAAGAAGGCTCTAGGACCAGTGGTCGATGTATGGAAAGAGGACTCAACCTCTTTGGCTCAGATATTAGGCATTAGTTCTGAACTTGAAAAGCAATGTGGTTATTATGGGAGCAGAAGAAAAAGAGAGAGGAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

9.75

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32940
fragaria_vesca	FvH4_4g08040 FvH4_4g08040 FvH4_4g08040 FvH4_4g08040 FvH4_4g08050 FvH4_4g08050 FvH4_4g08050 FvH4_6g42020 FvH4_6g42040 FvH4_6g42040 FvH4_6g42040
malus_domestica	MD09G1115300.v1.1
prunus_persica	Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1 Prupe.3G209300_v2.0.a1
pyrus_communis	pycom09g03960
rosa_chinensis	RchiOBHm_Chr2g0157951 RchiOBHm_Chr2g0157971 RchiOBHm_Chr2g0157981
rosa_laevigata	RLG00000021037 RLG00000021039 RLG00000021040 RLG00000021043 RLG00000021044
rosa_roxburghii	Rroxscaffold_1G00048300 Rroxscaffold_2G00091770 Rroxscaffold_2G00091780 Rroxscaffold_2G00091810 Rroxscaffold_7G00217870
rosa_rugosa	Rorug02G0464500 Rorug02G0464600 Rorug02G0464700 Rorug02G0464700 Rorug02G0464800
rosa_samantha	Rh2AG529900 Rh2AG530400 Rh2AG530500 Rh2BG544600 Rh2BG544700 Rh2BG545100 Rh2BG545200 Rh2CG514300 Rh2CG514400 Rh2CG514800 Rh2CG514900 Rh2DG552900 Rh2DG553300 Rh2DG553400
rosa_wichuraiana	Rw2G043870 Rw2G043890 Rw2G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	120
AgsI	TTSAA	5 cut(s)	34, 92, 192, 207, 314
AhdI	GACNNNNNGTC	1 cut(s)	248
AluBI	AGCT	2 cut(s)	48, 98
AluI	AGCT	2 cut(s)	48, 98
Ama87I	CYCGRG	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	172
BfaI	CTAG	1 cut(s)	239
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	172, 197
BspCNI	CTCAG	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	172, 197
Bst4CI	ACNGT	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	162, 285
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	175, 200
BstMBI	GATC	2 cut(s)	172, 197
BstV1I	GCAGC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	7, 252
Cfr13I	GGNCC	1 cut(s)	242
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	4 cut(s)	48, 98, 236, 284
CviKI_1	RGCY	4 cut(s)	48, 98, 236, 284
DdeI	CTNAG	2 cut(s)	162, 285
DpnI	GATC	2 cut(s)	174, 199
DpnII	GATC	2 cut(s)	172, 197
DriI	GACNNNNNGTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	124
FaeI	CATG	1 cut(s)	182
FaiI	YATR	4 cut(s)	51, 180, 259, 333
FatI	CATG	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	288, 307
Hpy188III	TCNNGA	2 cut(s)	116, 134
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	98, 226
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	162, 285
Hsp92II	CATG	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	172, 197
LmnI	GCTCC	2 cut(s)	95, 336
LpnPI	CCDG	1 cut(s)	258
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	239
MalI	GATC	2 cut(s)	174, 199
MboI	GATC	2 cut(s)	172, 197
MboII	GAAGA	1 cut(s)	354
MfeI	CAATTG	1 cut(s)	75
MluCI	AATT	3 cut(s)	75, 202, 361
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	5 cut(s)	75, 205, 259, 286, 348
Mph1103I	ATGCAT	1 cut(s)	124
MseI	TTAA	1 cut(s)	228
MunI	CAATTG	1 cut(s)	75
NdeII	GATC	2 cut(s)	172, 197
NlaIII	CATG	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	172, 197
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	263
SetI	ASST	4 cut(s)	50, 67, 100, 278
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	75, 202, 361
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	75, 202, 361
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	14, 252
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	14, 252
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	202
XspI	CTAG	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.