Rh2DG552900

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001253
Physical Location & Seq
Reverse (-)
78206570 .. 78208832
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG552900.1

Sequence Viewer

Length: 681 bp
ATGATTGATTCTCTGTACAAGCCACTGGAAAGTGGAGAAGATGATGGTATTATGAGGGAACTGCTTAAGGAATTCTATAAAACTAGCAAATGCAAACCAACTCAGATTATTATCTTCAGGGATGGAGTCAGTGAATCGCAATTTAATCAAGTTTTGAATGAGGAGCTGGATCAAATTATGAAGGCTTACAAGCACCACCAGAAGGTTGATGAGCTTCCAAAATTTACTGTGATTGTGGCTCAAAAGAACCATAATACAAAGCTATTCCAAGCTGGTTCTCCCCAGTATAATGTTCCACCAGGAACAGTTGTGGACACAAATATTGTGCATCCAAGGAATTATGATTTCTATATGTGTGCTCACAAAGGCTCCATTGGAACTTCTAGGCCAGTACACTATCATGTCTTGCTCGATGAGATTGGCTTTTCTGCCAATGAACTGCAAAACCTGATCCACTCTCTTTCCTATGTGTACCAGAGGAGTACAACTGCAGTCTCAATTGTTGCGCCCATATGTTATGCGCACCTTGCTGCAGCCCAAGTAATGCAGTTTATGAAGTTTGAAGATCTCTCGGCAACTTCATCATCAGGAAGGGTCAGTGTCACTACATCAGAGAGTATCCCAGTGCCTGAGCTCCCTAGGCTTCATGAGAAGGTCCGCGGTTCCATGTTCTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

226

Amino Acids

25.56

Weight (kDa)

6.55

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Piwi PF02171 16 - 186 1.8e-67 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 522
AccII CGCG 1 cut(s) 660
AciI CCGC 2 cut(s) 658, 660
AclWI GGATC 2 cut(s) 177, 445
AcsI RAATTY 2 cut(s) 71, 221
AcuI CTGAAG 1 cut(s) 100
AfaI GTAC 4 cut(s) 17, 393, 473, 484
AfiI CCNNNNNNNGG 1 cut(s) 202
AflII CTTAAG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 157, 563
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 5 cut(s) 166, 214, 262, 272, 634
AluI AGCT 5 cut(s) 166, 214, 262, 272, 634
Alw21I GWGCWC 2 cut(s) 361, 636
Alw26I GTCTC 1 cut(s) 499
AlwI GGATC 2 cut(s) 177, 445
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 530, 533
ApoI RAATTY 2 cut(s) 71, 221
AspA2I CCTAGG 1 cut(s) 638
AspLEI GCGC 2 cut(s) 508, 523
AspS9I GGNCC 1 cut(s) 655
AvaII GGWCC 1 cut(s) 655
AvrII CCTAGG 1 cut(s) 638
BanII GRGCYC 1 cut(s) 636
Bbv12I GWGCWC 2 cut(s) 361, 636
BbvI GCAGC 2 cut(s) 517, 545
BccI CCATC 2 cut(s) 38, 116
BciT130I CCWGG 1 cut(s) 300
BciVI GTATCC 1 cut(s) 629
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 3 cut(s) 84, 384, 639
BfmI CTRYAG 2 cut(s) 489, 531
BfrI CTTAAG 1 cut(s) 65
BfuI GTATCC 1 cut(s) 629
BglII AGATCT 1 cut(s) 565
BisI GCNGC 2 cut(s) 531, 534
BlnI CCTAGG 1 cut(s) 638
BlsI GCNGC 2 cut(s) 532, 535
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 655
BmiI GGNNCC 2 cut(s) 370, 664
BmrFI CCNGG 1 cut(s) 300
BmrI ACTGGG 2 cut(s) 277, 617
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 2 cut(s) 277, 617
Bpu10I CCTNAGC 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 110
BsaJI CCNNGG 3 cut(s) 332, 638, 658
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 4 cut(s) 30, 283, 389, 623
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 332, 638, 658
BseGI GGATG 2 cut(s) 127, 328
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 116, 621
BseNI ACTGG 4 cut(s) 30, 283, 389, 623
BseRI GAGGAG 2 cut(s) 176, 493
BseXI GCAGC 2 cut(s) 517, 545
Bsh1236I CGCG 1 cut(s) 660
BshFI GGCC 1 cut(s) 388
BsiHKAI GWGCWC 2 cut(s) 361, 636
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 499
BsnI GGCC 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 361, 636
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 3 cut(s) 169, 450, 565
BspACI CCGC 2 cut(s) 658, 660
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 2 cut(s) 115, 622
BspFNI CGCG 1 cut(s) 660
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 370, 664
BspMAI CTGCAG 2 cut(s) 493, 535
BspPI GGATC 2 cut(s) 177, 445
BspTI CTTAAG 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 15
BsrI ACTGG 4 cut(s) 30, 283, 389, 623
BssECI CCNNGG 3 cut(s) 332, 638, 658
BssMI GATC 3 cut(s) 169, 450, 565
BssT1I CCWWGG 2 cut(s) 332, 638
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 229, 307
BstAFI CTTAAG 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 102, 630
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 2 cut(s) 127, 328
BstFNI CGCG 1 cut(s) 660
BstHHI GCGC 2 cut(s) 508, 523
BstKTI GATC 3 cut(s) 172, 453, 568
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 3 cut(s) 169, 450, 565
BstMWI GCNNNNNNNGC 2 cut(s) 527, 640
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 2 cut(s) 489, 531
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 2 cut(s) 517, 545
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuI GTATCC 1 cut(s) 629
BsuRI GGCC 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 2 cut(s) 127, 328
BtsIMutI CAGTG 4 cut(s) 23, 136, 604, 630
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 646
CfoI GCGC 2 cut(s) 508, 523
Cfr13I GGNCC 1 cut(s) 655
Cfr42I CCGCGG 1 cut(s) 661
Csp6I GTAC 4 cut(s) 16, 392, 472, 483
CviAII CATG 3 cut(s) 401, 647, 667
CviQI GTAC 4 cut(s) 16, 392, 472, 483
DdeI CTNAG 2 cut(s) 102, 630
DpnI GATC 3 cut(s) 171, 452, 567
DpnII GATC 3 cut(s) 169, 450, 565
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 332, 638
Eco24I GRGCYC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 655
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 332, 638
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 332, 638
FaeI CATG 3 cut(s) 404, 650, 670
FatI CATG 3 cut(s) 400, 646, 666
FauNDI CATATG 1 cut(s) 512
Fnu4HI GCNGC 2 cut(s) 531, 534
FokI GGATG 2 cut(s) 134, 315
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 2 cut(s) 531, 534
FspAI RTGCGCAY 1 cut(s) 522
FspBI CTAG 3 cut(s) 84, 384, 639
FspI TGCGCA 1 cut(s) 522
GlaI GCGC 2 cut(s) 507, 522
GluI GCNGC 2 cut(s) 531, 534
HaeIII GGCC 1 cut(s) 388
HhaI GCGC 2 cut(s) 508, 523
Hin1II CATG 3 cut(s) 404, 650, 670
Hin6I GCGC 2 cut(s) 506, 521
HinP1I GCGC 2 cut(s) 506, 521
HinfI GANTC 3 cut(s) 8, 126, 134
Hpy166II GTNNAC 3 cut(s) 313, 394, 472
Hpy188I TCNGA 2 cut(s) 105, 613
Hpy188III TCNNGA 2 cut(s) 588, 647
Hpy8I GTNNAC 3 cut(s) 313, 394, 472
HpyAV CCTTC 4 cut(s) 175, 196, 585, 646
HpyCH4III ACNGT 2 cut(s) 229, 307
HpyCH4V TGCA 6 cut(s) 93, 328, 442, 491, 533, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 640
HpyF3I CTNAG 2 cut(s) 102, 630
Hsp92II CATG 3 cut(s) 404, 650, 670
HspAI GCGC 2 cut(s) 506, 521
KspI CCGCGG 1 cut(s) 661
Kzo9I GATC 3 cut(s) 169, 450, 565
LmnI GCTCC 3 cut(s) 163, 374, 639
Lsp1109I GCAGC 2 cut(s) 517, 545
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 84, 384, 639
MaeIII GTNAC 1 cut(s) 601
MalI GATC 3 cut(s) 171, 452, 567
MboI GATC 3 cut(s) 169, 450, 565
MboII GAAGA 4 cut(s) 50, 106, 575, 664
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 2 cut(s) 361, 636
MluCI AATT 6 cut(s) 71, 140, 174, 221, 337, 498
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 3 cut(s) 48, 154, 471
MseI TTAA 2 cut(s) 66, 144
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 660
MspCI CTTAAG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 660
MwoI GCNNNNNNNGC 2 cut(s) 527, 640
NdeI CATATG 1 cut(s) 512
NdeII GATC 3 cut(s) 169, 450, 565
NlaIII CATG 3 cut(s) 404, 650, 670
NlaIV GGNNCC 2 cut(s) 370, 664
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 601
NsbI TGCGCA 1 cut(s) 522
PagI TCATGA 1 cut(s) 646
PfeI GAWTC 2 cut(s) 8, 134
PkrI GCNGC 2 cut(s) 532, 535
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 370, 664
PspPI GGNCC 1 cut(s) 655
PstI CTGCAG 2 cut(s) 493, 535
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 4 cut(s) 17, 393, 473, 484
RsaNI GTAC 4 cut(s) 16, 392, 472, 483
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 636
SacII CCGCGG 1 cut(s) 661
SaqAI TTAA 2 cut(s) 66, 144
SatI GCNGC 2 cut(s) 531, 534
Sau3AI GATC 3 cut(s) 169, 450, 565
Sau96I GGNCC 1 cut(s) 655
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 2 cut(s) 361, 636
SetI ASST 9 cut(s) 168, 207, 216, 264, 274, 450, 528, 636, 657
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 2 cut(s) 489, 531
Sfr303I CCGCGG 1 cut(s) 661
SgrBI CCGCGG 1 cut(s) 661
SinI GGWCC 1 cut(s) 655
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 6 cut(s) 71, 140, 174, 221, 337, 498
SsiI CCGC 2 cut(s) 658, 660
SspI AATATT 1 cut(s) 322
SspMI CTAG 3 cut(s) 84, 384, 639
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 2 cut(s) 332, 638
TaaI ACNGT 2 cut(s) 229, 307
TaqI TCGA 1 cut(s) 411
TasI AATT 6 cut(s) 71, 140, 174, 221, 337, 498
TatI WGTACW 3 cut(s) 15, 391, 482
TfiI GAWTC 2 cut(s) 8, 134
Tru1I TTAA 2 cut(s) 66, 144
Tru9I TTAA 2 cut(s) 66, 144
TscAI CASTG 4 cut(s) 30, 136, 604, 630
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 2 cut(s) 530, 533
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 5 cut(s) 194, 450, 569, 570, 635
TspRI CASTG 4 cut(s) 30, 136, 604, 630
Vha464I CTTAAG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 655
XapI RAATTY 2 cut(s) 71, 221
XmaJI CCTAGG 1 cut(s) 638
XspI CTAG 3 cut(s) 84, 384, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.