Rroxscaffold_7G00217870

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001253
Physical Location & Seq
Forward (+)
68393208 .. 68394513
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217870.1

Sequence Viewer

Length: 606 bp
ATGGATGCGGAAAGGGCAGTGGAGCTTGCGAAGCAGGGCTCGACGCTTCTGCTGCTGGACGTTCCTCAGCTCCCCTGGCATGACGACGAACTCGGGTTTTCAAAATGGAACGCTGGATCGGCTTCAAAGATGAGGCTCATCGACTTGGGTATCAGGGTGTTGACACGAAGATGGAGGAGATCTAGTACTGGGGAAAGTCCTCTTGCCAAGATTGGGTGTGAATGTGTGATTGAAGTTCAGGGATTTCATTCCAGTTTCCGTCCAACTCAGGGTGGTTTGTCCTTGAATATGGATGTATCTACAACAATGATCATGACTCCTGGACCGCTGGATCAAATTGTAAAGGCTTACCAGCACCTAGGGAAGGCTAATATTCCAAAGTTTACTGTGATTGTGACTCAGAAGAATAATCACACAAAGCTATTCCAAACTAATTCCGCTGATAATGTTCCACCAGGGACTGCTGTTGACACCAAAATTGTGCATCCAAGGAATTATGATTTCTACATGTGTGCTCAGGCAGGCATGATTGGAACTTCCAGGCCAGCTCACTATCATGTCTTGCTTGATGAGATTGGCTTTTCCCCGATGACTTGCAAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

201

Amino Acids

22.24

Weight (kDa)

8.69

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoL1 PF08699 71 - 104 5.7e-11 Argonaute linker 1 domain
Piwi PF02171 110 - 196 2e-30 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 8, 326, 438
AclWI GGATC 2 cut(s) 124, 339
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 3 cut(s) 213, 269, 364
AflIII ACRYGT 1 cut(s) 507
AgsI TTSAA 4 cut(s) 102, 126, 233, 286
AjnI CCWGG 4 cut(s) 74, 319, 454, 539
AluBI AGCT 4 cut(s) 25, 70, 421, 548
AluI AGCT 4 cut(s) 25, 70, 421, 548
Alw21I GWGCWC 1 cut(s) 517
AlwI GGATC 2 cut(s) 124, 339
AlwNI CAGNNNCTG 1 cut(s) 461
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 1 cut(s) 52
AspA2I CCTAGG 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 323
AvrII CCTAGG 1 cut(s) 358
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 517
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 4 cut(s) 76, 321, 456, 541
BclI TGATCA 1 cut(s) 309
BfaI CTAG 2 cut(s) 183, 359
BglII AGATCT 1 cut(s) 179
BisI GCNGC 1 cut(s) 53
BlnI CCTAGG 1 cut(s) 358
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 4 cut(s) 76, 321, 456, 541
Bme18I GGWCC 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 323
BmrFI CCNGG 4 cut(s) 76, 321, 456, 541
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 198
Bpu10I CCTNAGC 2 cut(s) 66, 516
BsaJI CCNNGG 4 cut(s) 74, 358, 455, 488
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 269, 364
Bse1I ACTGG 2 cut(s) 193, 252
BseBI CCWGG 4 cut(s) 76, 321, 456, 541
BseDI CCNNGG 4 cut(s) 74, 358, 455, 488
BseGI GGATG 3 cut(s) 10, 298, 484
BseLI CCNNNNNNNGG 3 cut(s) 213, 269, 364
BseMII CTCAG 4 cut(s) 80, 281, 413, 530
BseNI ACTGG 2 cut(s) 193, 252
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 544
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 3 cut(s) 213, 269, 364
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 41, 517
Bsp143I GATC 4 cut(s) 116, 179, 309, 331
BspACI CCGC 3 cut(s) 8, 326, 438
BspANI GGCC 1 cut(s) 544
BspCNI CTCAG 4 cut(s) 79, 280, 412, 529
BspHI TCATGA 1 cut(s) 312
BspPI GGATC 2 cut(s) 124, 339
BsrI ACTGG 2 cut(s) 193, 252
BssECI CCNNGG 4 cut(s) 74, 358, 455, 488
BssMI GATC 4 cut(s) 116, 179, 309, 331
BssT1I CCWWGG 2 cut(s) 358, 488
Bst2UI CCWGG 4 cut(s) 76, 321, 456, 541
Bst4CI ACNGT 1 cut(s) 388
BstC8I GCNNGC 3 cut(s) 27, 523, 546
BstDEI CTNAG 4 cut(s) 66, 267, 399, 516
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 3 cut(s) 10, 298, 484
BstKTI GATC 4 cut(s) 119, 182, 312, 334
BstMBI GATC 4 cut(s) 116, 179, 309, 331
BstMWI GCNNNNNNNGC 5 cut(s) 14, 31, 52, 76, 119
BstNI CCWGG 4 cut(s) 76, 321, 456, 541
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 4 cut(s) 74, 319, 454, 539
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 544
BtsCI GGATG 3 cut(s) 10, 298, 484
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 3 cut(s) 27, 523, 546
CaiI CAGNNNCTG 1 cut(s) 461
CciI TCATGA 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 186
CviAII CATG 5 cut(s) 80, 313, 508, 526, 557
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 4 cut(s) 66, 267, 399, 516
DpnI GATC 4 cut(s) 118, 181, 311, 333
DpnII GATC 4 cut(s) 116, 179, 309, 331
Eco130I CCWWGG 2 cut(s) 358, 488
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoRII CCWGG 4 cut(s) 74, 319, 454, 539
EcoT14I CCWWGG 2 cut(s) 358, 488
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 2 cut(s) 358, 488
FaeI CATG 5 cut(s) 83, 316, 511, 529, 560
FaiI YATR 7 cut(s) 81, 290, 314, 498, 509, 527, 558
FaqI GGGAC 1 cut(s) 472
FatI CATG 5 cut(s) 79, 312, 507, 525, 556
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 3 cut(s) 17, 305, 471
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 2 cut(s) 183, 359
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 544
HgaI GACGC 1 cut(s) 52
Hin1II CATG 5 cut(s) 83, 316, 511, 529, 560
HincII GTYRAC 2 cut(s) 162, 469
HindII GTYRAC 2 cut(s) 162, 469
HinfI GANTC 2 cut(s) 316, 397
Hpy166II GTNNAC 3 cut(s) 162, 384, 469
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 3 cut(s) 162, 384, 469
Hpy99I CGWCG 2 cut(s) 46, 89
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 484, 597
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 31, 52, 76, 119
HpyF3I CTNAG 4 cut(s) 66, 267, 399, 516
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 5 cut(s) 83, 316, 511, 529, 560
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 4 cut(s) 116, 179, 309, 331
LmnI GCTCC 2 cut(s) 22, 75
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 183, 359
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 394
MalI GATC 4 cut(s) 118, 181, 311, 333
MboI GATC 4 cut(s) 116, 179, 309, 331
MboII GAAGA 2 cut(s) 180, 415
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 41, 517
MluCI AATT 4 cut(s) 336, 433, 477, 493
MlyI GAGTC 2 cut(s) 310, 391
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 4 cut(s) 75, 126, 168, 210
MslI CAYNNNNRTG 2 cut(s) 169, 555
MspA1I CMGCKG 2 cut(s) 328, 440
MspR9I CCNGG 4 cut(s) 76, 321, 456, 541
MvaI CCWGG 4 cut(s) 76, 321, 456, 541
MwoI GCNNNNNNNGC 5 cut(s) 14, 31, 52, 76, 119
NdeII GATC 4 cut(s) 116, 179, 309, 331
NlaIII CATG 5 cut(s) 83, 316, 511, 529, 560
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 511
PagI TCATGA 1 cut(s) 312
PciI ACATGT 1 cut(s) 507
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 2 cut(s) 310, 391
PpsI GAGTC 2 cut(s) 310, 391
PscI ACATGT 1 cut(s) 507
Psp6I CCWGG 4 cut(s) 74, 319, 454, 539
PspGI CCWGG 4 cut(s) 74, 319, 454, 539
PspPI GGNCC 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 461
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 2 cut(s) 169, 555
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 4 cut(s) 116, 179, 309, 331
Sau96I GGNCC 1 cut(s) 323
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 2 cut(s) 310, 391
ScrFI CCNGG 4 cut(s) 76, 321, 456, 541
SduI GDGCHC 2 cut(s) 41, 517
SetI ASST 7 cut(s) 27, 63, 72, 360, 423, 550, 605
SfaNI GCATC 1 cut(s) 493
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 2 cut(s) 169, 555
Sse9I AATT 4 cut(s) 336, 433, 477, 493
SsiI CCGC 3 cut(s) 8, 326, 438
SspI AATATT 1 cut(s) 373
SspMI CTAG 2 cut(s) 183, 359
StyD4I CCNGG 4 cut(s) 74, 319, 454, 539
StyI CCWWGG 2 cut(s) 358, 488
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 41, 141
TasI AATT 4 cut(s) 336, 433, 477, 493
TatI WGTACW 1 cut(s) 185
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 323
XagI CCTNNNNNAGG 1 cut(s) 362
XceI RCATGY 1 cut(s) 511
XmaJI CCTAGG 1 cut(s) 358
XspI CTAG 2 cut(s) 183, 359
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.