Rorug02G0464800

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001253
Physical Location & Seq
Reverse (-)
59625977 .. 59630708
4732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0464800.1

Sequence Viewer

Length: 1344 bp
ATGAGAACGTCGTCGTTTTCTCTCCTCTCTCGCCTCCGCCACTCCCGCCGCTCCTCCTCCTACTCTAACTCTCTTATTTTCCACTTGGCCCATCAAAACGACGATCGCCGCCCCTCCCAAAACGCGCCGTTTAGGTCCTCCTACTCCACCCACACTCAGCTGCAGCGGCTCTTCTCCTCAGCTGCCTGCTCCAAACGGTTCGTTTTGCTCGACTTGCTTCCTTCCCCCGAGGACGCTGTTAATCACCATCGAAATTTCTTCACCAGAGCTAAACCTGTTAAACAGGTCAAGCTTGAATTCAATGACCAGCACAGTCAAAGGGCAGTCACAACTGCATTGTGGTGCAACTTCCTAGTGTTTTCGCTCAAGTTCACAGTCTGGTTATCCACCTCCAGCCATGTAATGTTGGCTGAAGTTGTGCATTCCGTTGCTGATTTTGCTAATCAGGCACTTCTTGCTTATGGGTTGAGTAGCTCAAGGCGTGCACCAGATGCTCTCCACCCTTACGGATACTCCAAGGAAAGATTTGTTTGGTCTTTGATATCTGCTGTTGGTATCTTTTGTCTTGGTTCCGGTGCAACTATAGTTCATGGAGTTCAAAACTTGTGGGTTTCACAGCCCCCTCCAAATATTCAATATGCAGCTTTAGTGATTGGTGGTTCGTTTATTATTGAAGGCGCTTCTCTTCTTGTTGCCATACAAGCTGTCAAGAAAGGTGCTGCTGCTGAGGGCATGAAATTAAGAGACTATATATGGCGTGGTCATGATCCTACCTCTGTTGCAGTCATGACTGAGGATGGCGCTGCTGTAGCTGGTCTTGCTATTGCTGCAGCATCATTGGTTGCTGTAAATGTCACAGGAAATGGAATTTACGATCCTATAGGTTCAATTGTAGTTGGCAACCTACTTGGAATGGTGGCTATCTTTCTGATACAAAGGAATCGACATGCTTTAATTGGTAGGGCAATGGATGACTATGATGTAGAGAAGGTTCTTCAGTTCTTGAAAAATGACCCGGTTGTAGATTCTTTATATGATTGCAAAAGCGAGGTGATTGGCCCGGGATTCTTCAGATTTAAGGCTGAGATAGATTTCAATGGAGTGGTGGTAGTTCAAAATTATCTCTATAGGACTGGACGTCAAGAATGGGCAAGACAGTTTCGTGAAGCTGCAAAGGAGAAGGATGATGCTGCTTTGCTGAAAATGATGTCCAATTATGGTGAAGAAGTAGTTACAGCCTTGGGAAGTGAGGTTGATAGATTGGAAAAGGAGATTCAAGAGCTTGTTCCTGGTATACGGCATGTCGACATTGAGGCACACAATCCAATAGAGCTGTCCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

447

Amino Acids

49.49

Weight (kDa)

8.25

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 110 - 318 1.1e-30 Cation efflux transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1141
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 2 cut(s) 1294, 1305
AccII CGCG 1 cut(s) 125
AciI CCGC 5 cut(s) 37, 46, 49, 109, 166
AclWI GGATC 2 cut(s) 761, 869
AcsI RAATTY 3 cut(s) 253, 296, 867
AcuI CTGAAG 3 cut(s) 432, 980, 1054
AcvI CACGTG 1 cut(s) 1341
AcyI GRCGYC 1 cut(s) 1138
AhdI GACNNNNNGTC 1 cut(s) 1137
AjnI CCWGG 1 cut(s) 1288
Alw21I GWGCWC 1 cut(s) 487
Alw26I GTCTC 1 cut(s) 738
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 2 cut(s) 761, 869
Ama87I CYCGRG 2 cut(s) 227, 1060
AoxI GGCC 2 cut(s) 87, 1057
ApaLI GTGCAC 1 cut(s) 483
ApoI RAATTY 3 cut(s) 253, 296, 867
AspLEI GCGC 3 cut(s) 127, 680, 803
AspS9I GGNCC 3 cut(s) 88, 135, 1058
AsuC2I CCSGG 3 cut(s) 1016, 1061, 1062
AsuHPI GGTGA 4 cut(s) 236, 253, 1063, 1232
AvaI CYCGRG 2 cut(s) 227, 1060
AvaII GGWCC 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 487
BbrPI CACGTG 1 cut(s) 1341
Bbv12I GWGCWC 1 cut(s) 487
BbvCI CCTCAGC 2 cut(s) 178, 726
BccI CCATC 3 cut(s) 99, 255, 791
BceAI ACGGC 2 cut(s) 112, 1313
BciT130I CCWGG 1 cut(s) 1290
BciVI GTATCC 1 cut(s) 503
BcnI CCSGG 3 cut(s) 1016, 1061, 1062
BcoDI GTCTC 1 cut(s) 738
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 6 cut(s) 161, 582, 807, 828, 879, 1126
BfoI RGCGCY 2 cut(s) 681, 804
BfuI GTATCC 1 cut(s) 503
Bme1390I CCNGG 4 cut(s) 1016, 1061, 1062, 1290
Bme18I GGWCC 1 cut(s) 135
BmeRI GACNNNNNGTC 1 cut(s) 1137
BmeT110I CYCGRG 2 cut(s) 227, 1060
BmgT120I GGNCC 3 cut(s) 88, 135, 1058
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 4 cut(s) 1016, 1061, 1062, 1290
BmsI GCATC 3 cut(s) 481, 842, 1177
BpmI CTGGAG 1 cut(s) 376
Bpu10I CCTNAGC 2 cut(s) 178, 726
BpuEI CTTGAG 2 cut(s) 350, 460
BpuMI CCSGG 3 cut(s) 1016, 1061, 1062
BsaAI YACGTR 1 cut(s) 1341
BsaHI GRCGYC 1 cut(s) 1138
BsaJI CCNNGG 4 cut(s) 228, 516, 1060, 1239
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 4 cut(s) 497, 527, 1092, 1122
Bse1I ACTGG 1 cut(s) 1138
Bse3DI GCAATG 1 cut(s) 972
BseBI CCWGG 1 cut(s) 1290
BseDI CCNNGG 4 cut(s) 228, 516, 1060, 1239
BseGI GGATG 3 cut(s) 802, 976, 1189
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 5 cut(s) 170, 192, 717, 783, 1074
BseNI ACTGG 1 cut(s) 1138
BseRI GAGGAG 4 cut(s) 14, 43, 46, 166
BseSI GKGCMC 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 89, 1059
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 487
BsiHKCI CYCGRG 2 cut(s) 227, 1060
BsiSI CCGG 3 cut(s) 573, 1016, 1061
BsmAI GTCTC 1 cut(s) 738
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 2 cut(s) 89, 1059
BsoBI CYCGRG 2 cut(s) 227, 1060
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 3 cut(s) 103, 766, 874
BspACI CCGC 5 cut(s) 37, 46, 49, 109, 166
BspANI GGCC 2 cut(s) 89, 1059
BspCNI CTCAG 5 cut(s) 169, 191, 718, 784, 1075
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 2 cut(s) 763, 786
BspLI GGNNCC 1 cut(s) 571
BspMAI CTGCAG 2 cut(s) 165, 832
BspPI GGATC 2 cut(s) 761, 869
BspQI GCTCTTC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 1 cut(s) 1138
BssECI CCNNGG 4 cut(s) 228, 516, 1060, 1239
BssMI GATC 3 cut(s) 103, 766, 874
BssNAI GTATAC 1 cut(s) 1295
BssNI GRCGYC 1 cut(s) 1138
BssT1I CCWWGG 2 cut(s) 516, 1239
Bst1107I GTATAC 1 cut(s) 1295
Bst2UI CCWGG 1 cut(s) 1290
Bst4CI ACNGT 4 cut(s) 198, 314, 376, 1158
Bst6I CTCTTC 2 cut(s) 176, 690
BstACI GRCGYC 1 cut(s) 1138
BstAPI GCANNNNNTGC 2 cut(s) 455, 491
BstBAI YACGTR 1 cut(s) 1341
BstC8I GCNNGC 2 cut(s) 187, 483
BstDEI CTNAG 5 cut(s) 156, 178, 726, 792, 1083
BstF5I GGATG 3 cut(s) 802, 976, 1189
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 2 cut(s) 681, 804
BstHHI GCGC 3 cut(s) 127, 680, 803
BstKTI GATC 3 cut(s) 106, 769, 877
BstMAI GTCTC 1 cut(s) 738
BstMBI GATC 3 cut(s) 103, 766, 874
BstMCI CGRYCG 1 cut(s) 106
BstNI CCWGG 1 cut(s) 1290
BstNSI RCATGY 2 cut(s) 950, 1304
BstSCI CCNGG 4 cut(s) 1014, 1059, 1060, 1288
BstSFI CTRYAG 6 cut(s) 161, 582, 807, 828, 879, 1126
BstSLI GKGCMC 1 cut(s) 487
BstUI CGCG 1 cut(s) 125
BstZ17I GTATAC 1 cut(s) 1295
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 2 cut(s) 89, 1059
BtsCI GGATG 3 cut(s) 802, 976, 1189
Cac8I GCNNGC 2 cut(s) 187, 483
CciI TCATGA 2 cut(s) 763, 786
CfoI GCGC 3 cut(s) 127, 680, 803
Cfr13I GGNCC 3 cut(s) 88, 135, 1058
Cfr9I CCCGGG 1 cut(s) 1060
CseI GACGC 1 cut(s) 242
CspCI CAANNNNNGTGG 2 cut(s) 587, 622
CviAII CATG 7 cut(s) 398, 590, 733, 764, 787, 947, 1301
DdeI CTNAG 5 cut(s) 156, 178, 726, 792, 1083
DpnI GATC 3 cut(s) 105, 768, 876
DpnII GATC 3 cut(s) 103, 766, 874
DriI GACNNNNNGTC 1 cut(s) 1137
Eam1104I CTCTTC 2 cut(s) 176, 690
Eam1105I GACNNNNNGTC 1 cut(s) 1137
EarI CTCTTC 2 cut(s) 176, 690
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 516, 1239
Eco32I GATATC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 3 cut(s) 432, 980, 1054
Eco72I CACGTG 1 cut(s) 1341
Eco88I CYCGRG 2 cut(s) 227, 1060
EcoO109I RGGNCCY 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 1288
EcoRV GATATC 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 516, 1239
ErhI CCWWGG 2 cut(s) 516, 1239
FaeI CATG 7 cut(s) 401, 593, 736, 767, 790, 950, 1304
FatI CATG 7 cut(s) 397, 589, 732, 763, 786, 946, 1300
FauI CCCGC 1 cut(s) 53
FblI GTMKAC 2 cut(s) 1294, 1305
FokI GGATG 3 cut(s) 809, 983, 1196
FspBI CTAG 1 cut(s) 353
GlaI GCGC 3 cut(s) 126, 679, 802
GsuI CTGGAG 1 cut(s) 376
HaeII RGCGCY 2 cut(s) 681, 804
HaeIII GGCC 2 cut(s) 89, 1059
HapII CCGG 3 cut(s) 573, 1016, 1061
HgaI GACGC 1 cut(s) 242
HhaI GCGC 3 cut(s) 127, 680, 803
Hin1I GRCGYC 1 cut(s) 1138
Hin1II CATG 7 cut(s) 401, 593, 736, 767, 790, 950, 1304
Hin6I GCGC 3 cut(s) 125, 678, 801
HinP1I GCGC 3 cut(s) 125, 678, 801
HincII GTYRAC 1 cut(s) 1306
HindII GTYRAC 1 cut(s) 1306
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 4 cut(s) 940, 1025, 1065, 1273
HpaII CCGG 3 cut(s) 573, 1016, 1061
HphI GGTGA 4 cut(s) 236, 253, 1063, 1232
Hpy166II GTNNAC 5 cut(s) 372, 485, 1295, 1306, 1338
Hpy188I TCNGA 2 cut(s) 930, 1073
Hpy188III TCNNGA 7 cut(s) 709, 764, 787, 1003, 1142, 1163, 1277
Hpy8I GTNNAC 5 cut(s) 372, 485, 1295, 1306, 1338
Hpy99I CGWCG 3 cut(s) 13, 16, 104
HpyAV CCTTC 4 cut(s) 231, 668, 982, 1174
HpyCH4III ACNGT 4 cut(s) 198, 314, 376, 1158
HpyCH4IV ACGT 3 cut(s) 8, 1138, 1340
HpyF3I CTNAG 5 cut(s) 156, 178, 726, 792, 1083
HpySE526I ACGT 3 cut(s) 8, 1138, 1340
Hsp92I GRCGYC 1 cut(s) 1138
Hsp92II CATG 7 cut(s) 401, 593, 736, 767, 790, 950, 1304
HspAI GCGC 3 cut(s) 125, 678, 801
Kzo9I GATC 3 cut(s) 103, 766, 874
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 56, 194
LweI GCATC 3 cut(s) 481, 842, 1177
MaeI CTAG 1 cut(s) 353
MaeII ACGT 3 cut(s) 8, 1138, 1340
MaeIII GTNAC 3 cut(s) 325, 853, 1231
MalI GATC 3 cut(s) 105, 768, 876
MbiI CCGCTC 1 cut(s) 51
MboI GATC 3 cut(s) 103, 766, 874
MboII GAAGA 6 cut(s) 163, 250, 677, 986, 1060, 1235
MfeI CAATTG 1 cut(s) 888
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 8 cut(s) 253, 296, 737, 867, 888, 954, 1117, 1213
MseI TTAA 5 cut(s) 240, 279, 740, 953, 1077
MslI CAYNNNNRTG 1 cut(s) 340
MspA1I CMGCKG 3 cut(s) 160, 166, 182
MspI CCGG 3 cut(s) 573, 1016, 1061
MspR9I CCNGG 4 cut(s) 1016, 1061, 1062, 1290
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 1 cut(s) 1290
MvnI CGCG 1 cut(s) 125
NciI CCSGG 3 cut(s) 1016, 1061, 1062
NdeII GATC 3 cut(s) 103, 766, 874
NlaIII CATG 7 cut(s) 401, 593, 736, 767, 790, 950, 1304
NlaIV GGNNCC 1 cut(s) 571
NmuCI GTSAC 2 cut(s) 325, 853
NspI RCATGY 2 cut(s) 950, 1304
PagI TCATGA 2 cut(s) 763, 786
PciSI GCTCTTC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 4 cut(s) 940, 1025, 1065, 1273
Ple19I CGATCG 1 cut(s) 106
PmaCI CACGTG 1 cut(s) 1341
PmlI CACGTG 1 cut(s) 1341
Ppu21I YACGTR 1 cut(s) 1341
PpuMI RGGWCCY 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 1288
PspCI CACGTG 1 cut(s) 1341
PspGI CCWGG 1 cut(s) 1288
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 3 cut(s) 88, 135, 1058
PspPPI RGGWCCY 1 cut(s) 135
PsrI GAACNNNNNNTAC 2 cut(s) 975, 1007
PstI CTGCAG 2 cut(s) 165, 832
PvuI CGATCG 1 cut(s) 106
PvuII CAGCTG 2 cut(s) 160, 182
RseI CAYNNNNRTG 1 cut(s) 340
SalI GTCGAC 1 cut(s) 1304
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 5 cut(s) 240, 279, 740, 953, 1077
Sau3AI GATC 3 cut(s) 103, 766, 874
Sau96I GGNCC 3 cut(s) 88, 135, 1058
ScrFI CCNGG 4 cut(s) 1016, 1061, 1062, 1290
SduI GDGCHC 1 cut(s) 487
SfaNI GCATC 3 cut(s) 481, 842, 1177
SfcI CTRYAG 6 cut(s) 161, 582, 807, 828, 879, 1126
SinI GGWCC 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 1062
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 2 cut(s) 365, 475
SmoI CTYRAG 2 cut(s) 365, 475
Sse9I AATT 8 cut(s) 253, 296, 737, 867, 888, 954, 1117, 1213
SsiI CCGC 5 cut(s) 37, 46, 49, 109, 166
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 4 cut(s) 1014, 1059, 1060, 1288
StyI CCWWGG 2 cut(s) 516, 1239
TaaI ACNGT 4 cut(s) 198, 314, 376, 1158
TaiI ACGT 3 cut(s) 11, 1141, 1343
TaqI TCGA 4 cut(s) 210, 250, 943, 1305
TasI AATT 8 cut(s) 253, 296, 737, 867, 888, 954, 1117, 1213
TauI GCSGC 3 cut(s) 51, 111, 169
TfiI GAWTC 4 cut(s) 940, 1025, 1065, 1273
Tru1I TTAA 5 cut(s) 240, 279, 740, 953, 1077
Tru9I TTAA 5 cut(s) 240, 279, 740, 953, 1077
TseFI GTSAC 2 cut(s) 325, 853
Tsp45I GTSAC 2 cut(s) 325, 853
TspDTI ATGAA 2 cut(s) 578, 749
TspGWI ACGGA 2 cut(s) 415, 522
TspMI CCCGGG 1 cut(s) 1060
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 3 cut(s) 253, 296, 867
XceI RCATGY 2 cut(s) 950, 1304
XmaI CCCGGG 1 cut(s) 1060
XmiI GTMKAC 2 cut(s) 1294, 1305
XspI CTAG 1 cut(s) 353
ZraI GACGTC 1 cut(s) 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.